Wall clock time and date at job start Wed Apr 1 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47298 * 2 1 4 4 N 1.30182 * 126.80205 * 89.97415 * 3 2 1 5 5 O 1.20922 * 111.60116 * 180.02562 * 4 3 2 6 6 C 1.34037 * 111.56979 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.77505 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46983 * 269.97069 * 7 6 5 9 9 C 1.35452 * 106.44718 * 0.02562 * 6 5 4 10 10 C 1.50699 * 128.00777 * 180.02562 * 9 6 5 11 11 C 1.50702 * 109.46629 * 269.97295 * 10 9 6 12 12 O 1.21279 * 120.00327 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99546 * 179.97438 * 11 10 9 14 14 C 1.46666 * 125.33379 * 179.97438 * 13 11 10 15 15 C 1.53726 * 107.94212 * 180.52503 * 14 13 11 16 16 H 1.09004 * 112.56695 * 139.72160 * 15 14 13 17 17 C 1.53688 * 109.34094 * 266.25379 * 15 14 13 18 18 N 1.47175 * 107.73523 * 128.69298 * 17 15 14 19 19 C 1.36932 * 125.26009 * 180.36345 * 18 17 15 20 20 H 1.08001 * 120.00687 * 173.18381 * 19 18 17 21 21 C 1.38823 * 119.99765 * 353.19014 * 19 18 17 22 22 N 1.31622 * 119.99727 * 6.95886 * 21 19 18 23 23 Si 1.86794 * 119.99853 * 186.96385 * 21 19 18 24 24 H 1.48498 * 109.47107 * 94.98663 * 23 21 19 25 25 H 1.48505 * 109.46836 * 214.98231 * 23 21 19 26 26 H 1.48494 * 109.47456 * 334.97958 * 23 21 19 27 27 C 1.46748 * 109.40850 * 359.65329 * 18 17 15 28 28 C 1.53924 * 106.72125 * 342.40681 * 27 18 17 29 29 H 1.08996 * 113.01273 * 150.83496 * 28 27 18 30 30 C 1.46774 * 125.33832 * 359.69778 * 13 11 10 31 31 H 1.08990 * 109.47023 * 59.99980 * 1 2 3 32 32 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47140 * 299.99861 * 1 2 3 34 34 H 1.08992 * 109.47320 * 239.99679 * 2 1 3 35 35 H 1.09006 * 109.47214 * 119.99856 * 2 1 3 36 36 H 1.08999 * 109.47433 * 29.96895 * 7 6 5 37 37 H 1.09007 * 109.47238 * 149.97188 * 7 6 5 38 38 H 1.09007 * 109.47036 * 59.99995 * 8 7 6 39 39 H 1.09004 * 109.47328 * 179.97438 * 8 7 6 40 40 H 1.09004 * 109.47331 * 300.00319 * 8 7 6 41 41 H 1.09007 * 109.47076 * 29.96830 * 10 9 6 42 42 H 1.08996 * 109.47067 * 149.97359 * 10 9 6 43 43 H 1.09001 * 109.77335 * 300.14142 * 14 13 11 44 44 H 1.09001 * 109.77520 * 60.90889 * 14 13 11 45 45 H 1.09001 * 109.76246 * 247.19360 * 17 15 14 46 46 H 1.08998 * 109.76294 * 7.91611 * 17 15 14 47 47 H 0.96997 * 119.99911 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.00604 * 223.09013 * 27 18 17 49 49 H 1.08998 * 110.00835 * 101.72355 * 27 18 17 50 50 H 1.09007 * 110.02518 * 280.78903 * 30 13 11 51 51 H 1.08998 * 110.03130 * 42.20656 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 1.0424 5 8 2.6806 3.2565 0.7253 6 6 2.7298 3.3968 -0.6068 7 6 3.1631 4.6222 -1.3695 8 6 1.9497 5.5176 -1.6278 9 6 2.3132 2.2198 -1.1320 10 6 2.1815 1.8475 -2.5864 11 6 0.7980 2.1970 -3.0710 12 8 -0.0024 2.6985 -2.3103 13 7 0.4502 1.9521 -4.3500 14 6 -0.8589 2.2434 -4.9436 15 6 -0.8231 1.7937 -6.4132 16 1 -1.7504 1.3143 -6.7267 17 6 -0.4319 2.9858 -7.3009 18 7 0.6812 2.5568 -8.1627 19 6 1.3121 3.3433 -9.0893 20 1 2.1912 2.9778 -9.5992 21 6 0.8216 4.6106 -9.3733 22 7 -0.1637 5.1104 -8.6579 23 14 1.5600 5.6063 -10.7705 24 1 0.7541 5.4052 -12.0015 25 1 1.5578 7.0463 -10.4072 26 1 2.9551 5.1594 -11.0136 27 6 1.0206 1.1610 -7.8624 28 6 0.4019 0.8403 -6.4900 29 1 0.1367 -0.2109 -6.3773 30 6 1.3240 1.3575 -5.3684 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.9020 5.1711 -0.7858 37 1 3.6020 4.3216 -2.3210 38 1 1.5108 5.8182 -0.6764 39 1 2.2632 6.4042 -2.1791 40 1 1.2107 4.9687 -2.2115 41 1 2.9205 2.3963 -3.1703 42 1 2.3480 0.7767 -2.7038 43 1 -1.6359 1.6964 -4.4096 44 1 -1.0581 3.3137 -4.8904 45 1 -1.2763 3.2705 -7.9287 46 1 -0.1362 3.8289 -6.6765 47 1 -0.5067 5.9957 -8.8565 48 1 2.1032 1.0411 -7.8207 49 1 0.6011 0.5032 -8.6236 50 1 2.0065 2.1114 -5.7610 51 1 1.8885 0.5299 -4.9390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048867408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:01 Heat of formation + Delta-G solvation = 22.220490 kcal Electronic energy + Delta-G solvation = -32095.141967 eV Core-core repulsion = 27997.258740 eV Total energy + Delta-G solvation = -4097.883227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.91691 -41.46690 -39.66396 -36.83946 -36.42793 -35.84780 -34.09714 -33.00274 -32.08830 -31.45227 -31.03667 -29.54453 -27.18912 -26.96694 -25.58197 -24.86492 -24.36918 -22.75654 -21.78198 -20.83951 -20.68503 -20.22726 -18.85662 -18.66152 -18.07484 -17.85176 -17.30354 -16.73042 -16.30217 -16.19001 -15.63148 -15.49540 -15.44063 -15.10378 -14.70637 -14.62713 -14.42124 -14.26937 -14.02873 -13.65695 -13.61700 -13.51324 -13.38449 -13.25833 -13.19429 -13.03015 -12.71292 -12.66705 -12.63458 -12.35947 -12.33427 -12.11176 -11.94164 -11.83071 -11.82183 -11.68298 -11.48812 -11.30720 -11.09315 -10.79354 -10.63868 -10.12661 -9.58735 -8.82339 -7.82997 -5.16150 0.46484 1.15670 1.48028 1.49406 1.57809 1.64142 2.07292 2.19328 2.52307 3.17917 3.35973 3.36886 3.43965 3.61131 3.72249 3.79958 3.89901 3.93935 4.04814 4.10030 4.21561 4.26342 4.31004 4.33889 4.36804 4.41047 4.44339 4.49690 4.57227 4.63534 4.70624 4.79565 4.83122 4.89911 4.91139 4.92034 4.98560 5.01441 5.10438 5.10942 5.12846 5.16059 5.27120 5.28154 5.34798 5.46067 5.52863 5.67982 5.81107 6.24539 6.58202 7.14146 7.17971 7.28998 7.84296 8.46347 9.27478 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003012 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.209775 B = 9293.065649 C =10409.142750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C 0.033 3.967 4 N -0.397 5.397 5 O 0.080 5.920 6 C -0.016 4.016 7 C -0.040 4.040 8 C -0.147 4.147 9 C -0.190 4.190 10 C -0.051 4.051 11 C 0.526 3.474 12 O -0.575 6.575 13 N -0.608 5.608 14 C 0.128 3.872 15 C -0.114 4.114 16 H 0.109 0.891 17 C 0.199 3.801 18 N -0.623 5.623 19 C -0.236 4.236 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.971 3.029 24 H -0.291 1.291 25 H -0.300 1.300 26 H -0.264 1.264 27 C 0.139 3.861 28 C -0.093 4.093 29 H 0.134 0.866 30 C 0.112 3.888 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.004 0.996 46 H 0.005 0.995 47 H 0.243 0.757 48 H 0.051 0.949 49 H 0.028 0.972 50 H 0.055 0.945 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -11.986 13.451 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.126 4.126 4 N -0.106 5.106 5 O 0.019 5.981 6 C -0.080 4.080 7 C -0.078 4.078 8 C -0.205 4.205 9 C -0.194 4.194 10 C -0.091 4.091 11 C 0.316 3.684 12 O -0.454 6.454 13 N -0.341 5.341 14 C 0.005 3.995 15 C -0.133 4.133 16 H 0.127 0.873 17 C 0.074 3.926 18 N -0.350 5.350 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.800 3.200 24 H -0.218 1.218 25 H -0.228 1.228 26 H -0.189 1.189 27 C 0.014 3.986 28 C -0.112 4.112 29 H 0.152 0.848 30 C -0.010 4.010 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.573 -11.694 15.171 20.252 hybrid contribution -0.355 1.439 -1.614 2.191 sum 6.219 -10.256 13.557 18.101 Atomic orbital electron populations 1.21649 0.94195 1.02878 1.01078 1.20089 0.96084 0.86870 1.05164 1.23852 1.00410 1.00194 0.88188 1.73774 1.18696 0.93135 1.24979 1.84732 1.63299 1.26831 1.23247 1.24729 1.01198 0.98745 0.83326 1.20271 0.98894 0.89435 0.99195 1.21719 0.97218 0.99701 1.01823 1.20449 1.08177 0.94174 0.96586 1.19937 0.93657 1.06081 0.89390 1.20613 0.90171 0.77767 0.79827 1.90695 1.54157 1.45361 1.55213 1.48324 1.14581 1.61538 1.09647 1.21592 0.85760 0.99259 0.92898 1.22976 1.00090 0.97061 0.93206 0.87324 1.20836 0.89524 0.91954 0.90317 1.44644 1.38381 1.09111 1.42857 1.19444 1.07599 0.96183 1.13245 0.89587 1.25598 0.99397 0.99048 1.01743 1.70205 1.30826 1.17048 1.41804 0.85164 0.78319 0.77370 0.79154 1.21831 1.22763 1.18854 1.21383 0.98301 0.85029 0.93870 1.22982 0.93873 1.00360 0.94004 0.84821 1.22206 0.92897 0.98157 0.87763 0.93897 0.89373 0.94396 0.87244 0.89196 0.87027 0.87138 0.92801 0.89928 0.94653 0.85884 0.84417 0.90922 0.94518 0.97735 0.97731 0.94746 0.93069 0.95372 0.92684 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.89 71.98 0.71 -2.12 16 2 C -0.04 -0.81 6.44 29.85 0.19 -0.62 16 3 C 0.03 0.82 6.58 43.58 0.29 1.11 16 4 N -0.40 -11.52 12.07 -49.55 -0.60 -12.12 16 5 O 0.08 2.22 11.20 71.66 0.80 3.02 16 6 C -0.02 -0.40 6.74 25.04 0.17 -0.23 16 7 C -0.04 -0.76 6.35 29.85 0.19 -0.57 16 8 C -0.15 -3.43 9.89 71.98 0.71 -2.71 16 9 C -0.19 -4.55 4.81 -19.74 -0.10 -4.64 16 10 C -0.05 -1.01 5.06 29.10 0.15 -0.86 16 11 C 0.53 14.84 7.83 87.66 0.69 15.53 16 12 O -0.57 -20.92 15.36 -3.03 -0.05 -20.96 16 13 N -0.61 -17.02 3.31 -817.05 -2.71 -19.72 16 14 C 0.13 4.10 6.23 86.59 0.54 4.64 16 15 C -0.11 -3.69 4.01 -9.49 -0.04 -3.73 16 16 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.20 9.21 4.78 86.48 0.41 9.62 16 18 N -0.62 -29.15 3.39 -696.51 -2.36 -31.51 16 19 C -0.24 -12.38 10.24 84.04 0.86 -11.52 16 20 H 0.09 4.27 7.84 -2.91 -0.02 4.25 16 21 C -0.06 -3.56 5.48 84.86 0.47 -3.10 16 22 N -0.95 -56.11 10.30 21.66 0.22 -55.89 16 23 Si 0.97 44.45 29.56 68.60 2.03 46.48 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 C 0.14 4.67 6.41 86.64 0.56 5.23 16 28 C -0.09 -2.38 4.14 -9.27 -0.04 -2.42 16 29 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 30 C 0.11 2.64 5.88 86.71 0.51 3.15 16 31 H 0.04 1.07 7.76 -2.39 -0.02 1.05 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.40 7.66 -2.39 -0.02 1.38 16 35 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.75 7.44 -2.38 -0.02 1.73 16 38 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.03 1.06 7.53 -2.38 -0.02 1.04 16 41 H 0.12 2.03 7.45 -2.38 -0.02 2.01 16 42 H 0.14 1.77 7.40 -2.39 -0.02 1.76 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.04 1.43 7.44 -2.39 -0.02 1.41 16 45 H 0.00 0.24 7.27 -2.39 -0.02 0.22 16 46 H 0.00 0.24 6.73 -2.39 -0.02 0.23 16 47 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.05 1.59 7.97 -2.38 -0.02 1.57 16 49 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.05 1.60 7.76 -2.38 -0.02 1.58 16 51 H 0.11 1.65 7.61 -2.39 -0.02 1.63 16 Total: -1.00 -75.15 404.87 4.53 -70.62 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.92 Total: 13.31 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.27 Total: 6.77 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.44 Total: -119.24 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.76 Total: -17.94 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.15 4.53 -70.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048867408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.843 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds