Wall clock time and date at job start Wed Apr 1 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47254 * 2 1 4 4 O 1.33652 * 125.79882 * 270.16706 * 3 2 1 5 5 C 1.34215 * 110.90898 * 180.24859 * 4 3 2 6 6 C 1.34179 * 109.12386 * 359.76061 * 5 4 3 7 7 C 1.36411 * 125.80361 * 89.99875 * 3 2 1 8 8 C 1.47382 * 127.19218 * 0.03702 * 7 3 2 9 9 O 1.21614 * 119.99720 * 359.70816 * 8 7 3 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 7 3 11 11 C 1.47021 * 125.64528 * 359.41361 * 10 8 7 12 12 C 1.54314 * 107.27161 * 180.96931 * 11 10 8 13 13 C 1.55155 * 102.86463 * 22.52755 * 12 11 10 14 14 H 1.09002 * 111.03525 * 82.39506 * 13 12 11 15 15 N 1.46905 * 111.00333 * 206.22568 * 13 12 11 16 16 C 1.46892 * 111.00040 * 297.95223 * 15 13 12 17 17 C 1.53240 * 109.33912 * 172.74778 * 16 15 13 18 18 N 1.47080 * 108.52242 * 53.82754 * 17 16 15 19 19 C 1.36936 * 120.88048 * 128.83970 * 18 17 16 20 20 H 1.08008 * 120.00193 * 333.48877 * 19 18 17 21 21 C 1.38813 * 120.00061 * 153.49163 * 19 18 17 22 22 N 1.31616 * 120.00031 * 159.44349 * 21 19 18 23 23 Si 1.86791 * 119.99881 * 339.43800 * 21 19 18 24 24 H 1.48497 * 109.47293 * 91.97878 * 23 21 19 25 25 H 1.48507 * 109.47382 * 211.98005 * 23 21 19 26 26 H 1.48506 * 109.47354 * 331.97699 * 23 21 19 27 27 C 1.47071 * 118.23868 * 308.81870 * 18 17 16 28 28 C 1.46897 * 110.99590 * 173.64906 * 15 13 12 29 29 C 1.47422 * 125.64653 * 179.72486 * 10 8 7 30 30 H 1.08999 * 109.46967 * 60.00031 * 1 2 3 31 31 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46761 * 300.00207 * 1 2 3 33 33 H 1.09001 * 109.47046 * 240.00244 * 2 1 3 34 34 H 1.08996 * 109.47272 * 119.99553 * 2 1 3 35 35 H 1.07997 * 125.44036 * 179.79619 * 5 4 3 36 36 H 1.07994 * 127.02895 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.88768 * 300.51550 * 11 10 8 38 38 H 1.08998 * 109.87989 * 61.68548 * 11 10 8 39 39 H 1.09000 * 110.92786 * 264.10989 * 12 11 10 40 40 H 1.09003 * 110.58833 * 140.78736 * 12 11 10 41 41 H 1.08998 * 109.49719 * 292.70471 * 16 15 13 42 42 H 1.08996 * 109.49570 * 52.79177 * 16 15 13 43 43 H 1.09000 * 109.62827 * 294.11756 * 17 16 15 44 44 H 1.08998 * 109.79430 * 173.63796 * 17 16 15 45 45 H 0.97000 * 120.00272 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.63028 * 291.47267 * 27 18 17 47 47 H 1.09003 * 109.79482 * 170.98628 * 27 18 17 48 48 H 1.08995 * 109.49884 * 307.21696 * 28 15 13 49 49 H 1.09000 * 109.49237 * 67.29921 * 28 15 13 50 50 H 1.09003 * 110.36676 * 274.67166 * 29 10 8 51 51 H 1.08994 * 110.36877 * 36.88780 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2900 2.1590 -1.0840 5 6 2.7285 3.3797 -0.7392 6 6 2.7637 3.4723 0.5990 7 6 2.2984 2.1732 1.1063 8 6 2.1554 1.7666 2.5157 9 8 1.7560 0.6510 2.7892 10 7 2.4621 2.6330 3.5015 11 6 2.9595 4.0037 3.3135 12 6 3.1931 4.6028 4.7163 13 6 3.3607 3.3430 5.6064 14 1 4.3792 2.9585 5.5524 15 7 2.9810 3.6265 6.9969 16 6 3.8477 4.6598 7.5790 17 6 3.3099 5.0552 8.9584 18 7 3.1633 3.8370 9.7695 19 6 3.7022 3.7602 11.0260 20 1 4.5636 4.3596 11.2818 21 6 3.1415 2.9121 11.9710 22 7 3.8510 2.5223 13.0088 23 14 1.3800 2.3241 11.7700 24 1 1.3694 1.0355 11.0322 25 1 0.7659 2.1332 13.1086 26 1 0.6039 3.3364 11.0094 27 6 2.4223 2.7038 9.1954 28 6 2.9950 2.4010 7.8066 29 6 2.3606 2.3609 4.9468 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.0078 4.1627 -1.4286 36 1 3.0714 4.3264 1.1839 37 1 3.8957 3.9852 2.7556 38 1 2.2182 4.5968 2.7780 39 1 2.3327 5.1900 5.0371 40 1 4.1001 5.2072 4.7287 41 1 4.8603 4.2698 7.6816 42 1 3.8584 5.5344 6.9286 43 1 2.3401 5.5404 8.8480 44 1 4.0072 5.7373 9.4448 45 1 3.4593 1.9293 13.6690 46 1 1.3672 2.9629 9.1077 47 1 2.5323 1.8284 9.8356 48 1 2.3875 1.6372 7.3212 49 1 4.0196 2.0424 7.9060 50 1 1.3480 2.5569 5.2995 51 1 2.6428 1.3299 5.1595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052022916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:25 Heat of formation + Delta-G solvation = 28.793456 kcal Electronic energy + Delta-G solvation = -31195.198836 eV Core-core repulsion = 27097.600634 eV Total energy + Delta-G solvation = -4097.598202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.94179 -40.19553 -38.60773 -37.03029 -34.47309 -34.30122 -33.13702 -31.70329 -30.94962 -30.30243 -29.17433 -28.78027 -26.32907 -24.70998 -23.85053 -23.28418 -22.68796 -21.94779 -21.49264 -20.45285 -19.48425 -19.10106 -17.77344 -17.15974 -16.66047 -16.47157 -16.32196 -15.70286 -15.27196 -14.87158 -14.68192 -14.51302 -14.35340 -14.11401 -14.05062 -13.96044 -13.71290 -13.51793 -13.05593 -12.90261 -12.87704 -12.59412 -12.51428 -12.48314 -12.04847 -11.88414 -11.74967 -11.52417 -11.32360 -11.27534 -11.05980 -10.86817 -10.58630 -10.29583 -10.14689 -10.10927 -10.05037 -9.80727 -9.45642 -9.05023 -8.72457 -8.65537 -8.10193 -6.96973 -5.94471 -3.29957 1.06020 1.70911 2.42490 2.77564 3.12910 3.33992 3.50568 3.54610 4.04238 4.10883 4.18174 4.45463 4.48431 4.54230 4.63387 4.74783 4.84212 4.92627 4.95913 5.01665 5.09460 5.14969 5.17937 5.26761 5.32136 5.34548 5.54048 5.58221 5.63349 5.63966 5.68284 5.71186 5.75913 5.81917 5.87474 5.91068 5.94089 5.95179 6.03790 6.04730 6.12637 6.21894 6.35771 6.56500 6.64013 6.68711 6.86316 7.29277 7.35010 7.39934 7.94059 7.99747 8.32446 8.92909 9.71986 10.10959 11.21490 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002289 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.536084 B =12231.462753 C =13213.463395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.041 4.041 6 C -0.197 4.197 7 C -0.239 4.239 8 C 0.604 3.396 9 O -0.540 6.540 10 N -0.609 5.609 11 C 0.100 3.900 12 C -0.125 4.125 13 C 0.069 3.931 14 H 0.054 0.946 15 N -0.523 5.523 16 C 0.043 3.957 17 C 0.152 3.848 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.884 3.116 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.269 1.269 27 C 0.131 3.869 28 C 0.040 3.960 29 C 0.117 3.883 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.208 0.792 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.262 0.738 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 2.637 -30.164 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.071 6.071 5 C -0.107 4.107 6 C -0.216 4.216 7 C -0.243 4.243 8 C 0.395 3.605 9 O -0.419 6.419 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.163 4.163 13 C -0.041 4.041 14 H 0.072 0.928 15 N -0.248 5.248 16 C -0.086 4.086 17 C 0.026 3.974 18 N -0.333 5.333 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.714 3.286 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.005 3.995 28 C -0.089 4.089 29 C -0.005 4.005 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.224 0.776 36 H 0.183 0.817 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.100 2.015 -30.170 30.395 hybrid contribution 0.055 -0.320 0.133 0.351 sum -3.045 1.696 -30.037 30.238 Atomic orbital electron populations 1.21690 0.93226 1.02767 1.02392 1.20414 0.97096 0.86330 1.05131 1.22867 0.96904 0.94371 0.83038 1.83768 1.65073 1.23288 1.35010 1.23915 1.04073 0.86249 0.96472 1.23376 1.05430 0.98260 0.94567 1.21058 1.13751 0.95938 0.93542 1.16801 0.77142 0.83503 0.83076 1.90772 1.47345 1.20080 1.83711 1.48124 1.65558 1.14154 1.06472 1.22358 0.98981 0.82670 0.98312 1.22752 1.03517 0.97500 0.92571 1.22744 0.96668 0.94889 0.89766 0.92814 1.61980 1.52848 1.10281 0.99684 1.22640 0.94372 0.93970 0.97620 1.20997 0.98399 0.89214 0.88785 1.44411 1.64186 1.09654 1.15022 1.18916 1.08799 1.24965 0.86076 0.89700 1.25264 0.97976 0.98829 0.95651 1.69833 1.35897 1.35473 1.14048 0.86953 0.87451 0.78465 0.75722 1.21571 1.23201 1.19433 1.21423 0.94697 0.91942 0.91473 1.22696 1.00021 0.90584 0.95587 1.22234 1.00458 0.99573 0.78260 0.92655 0.91240 0.91815 0.89991 0.86782 0.77582 0.81700 0.91094 0.90893 0.89082 0.90012 0.94823 0.91333 0.95201 0.91620 0.92771 0.94897 0.90693 0.91449 0.94446 0.90042 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.47 5.94 -27.88 -0.17 -0.63 16 3 C 0.08 0.84 6.63 -34.96 -0.23 0.60 16 4 O -0.18 -1.60 10.52 7.65 0.08 -1.52 16 5 C -0.04 -0.29 12.03 29.30 0.35 0.07 16 6 C -0.20 -1.61 9.42 -37.45 -0.35 -1.96 16 7 C -0.24 -2.65 6.25 -103.27 -0.64 -3.30 16 8 C 0.60 8.08 7.84 -12.54 -0.10 7.98 16 9 O -0.54 -8.60 15.10 5.27 0.08 -8.52 16 10 N -0.61 -7.31 3.33 -171.81 -0.57 -7.88 16 11 C 0.10 0.87 4.99 -3.07 -0.02 0.85 16 12 C -0.13 -1.17 5.34 -24.90 -0.13 -1.31 16 13 C 0.07 0.86 2.71 -65.56 -0.18 0.69 16 14 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 15 N -0.52 -8.11 4.53 -223.78 -1.01 -9.12 16 16 C 0.04 0.67 5.48 -3.70 -0.02 0.65 16 17 C 0.15 2.93 6.69 -3.60 -0.02 2.91 16 18 N -0.61 -14.45 2.82 -172.02 -0.48 -14.93 16 19 C -0.26 -7.24 10.08 -15.06 -0.15 -7.39 16 20 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 21 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 22 N -0.91 -27.97 13.97 55.49 0.78 -27.19 16 23 Si 0.88 22.58 24.31 -169.99 -4.13 18.45 16 24 H -0.29 -7.09 6.58 56.52 0.37 -6.72 16 25 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 26 H -0.27 -6.81 6.61 56.52 0.37 -6.43 16 27 C 0.13 2.87 4.35 -3.60 -0.02 2.85 16 28 C 0.04 0.72 5.48 -3.70 -0.02 0.70 16 29 C 0.12 1.53 5.32 -2.53 -0.01 1.52 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.11 1.19 6.49 -51.93 -0.34 0.85 16 35 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.17 0.99 4.87 -52.49 -0.26 0.73 16 37 H 0.07 0.53 6.89 -51.93 -0.36 0.17 16 38 H 0.07 0.54 6.99 -51.93 -0.36 0.18 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.24 7.95 -51.93 -0.41 0.82 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 47 H 0.08 1.80 4.61 -51.93 -0.24 1.56 16 48 H 0.07 1.09 6.79 -51.93 -0.35 0.74 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.08 1.11 7.74 -51.93 -0.40 0.70 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -33.73 388.47 -8.96 -42.69 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.12 Total: -1.78 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.44 Total: 3.96 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -1.29 Total: -59.13 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.16 Total: -10.04 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.13 Total: 18.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.73 -8.96 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052022916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.483 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds