Wall clock time and date at job start Wed Apr 1 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47254 * 2 1 4 4 O 1.33652 * 125.79882 * 270.16706 * 3 2 1 5 5 C 1.34215 * 110.90898 * 180.24859 * 4 3 2 6 6 C 1.34179 * 109.12386 * 359.76061 * 5 4 3 7 7 C 1.36411 * 125.80361 * 89.99875 * 3 2 1 8 8 C 1.47382 * 127.19218 * 0.03702 * 7 3 2 9 9 O 1.21614 * 119.99720 * 359.70816 * 8 7 3 10 10 N 1.34777 * 120.00128 * 179.97438 * 8 7 3 11 11 C 1.47021 * 125.64528 * 359.41361 * 10 8 7 12 12 C 1.54314 * 107.27161 * 180.96931 * 11 10 8 13 13 C 1.55155 * 102.86463 * 22.52755 * 12 11 10 14 14 H 1.09002 * 111.03525 * 82.39506 * 13 12 11 15 15 N 1.46905 * 111.00333 * 206.22568 * 13 12 11 16 16 C 1.46892 * 111.00040 * 297.95223 * 15 13 12 17 17 C 1.53240 * 109.33912 * 172.74778 * 16 15 13 18 18 N 1.47080 * 108.52242 * 53.82754 * 17 16 15 19 19 C 1.36936 * 120.88048 * 128.83970 * 18 17 16 20 20 H 1.08008 * 120.00193 * 333.48877 * 19 18 17 21 21 C 1.38813 * 120.00061 * 153.49163 * 19 18 17 22 22 N 1.31616 * 120.00031 * 159.44349 * 21 19 18 23 23 Si 1.86791 * 119.99881 * 339.43800 * 21 19 18 24 24 H 1.48497 * 109.47293 * 91.97878 * 23 21 19 25 25 H 1.48507 * 109.47382 * 211.98005 * 23 21 19 26 26 H 1.48506 * 109.47354 * 331.97699 * 23 21 19 27 27 C 1.47071 * 118.23868 * 308.81870 * 18 17 16 28 28 C 1.46897 * 110.99590 * 173.64906 * 15 13 12 29 29 C 1.47422 * 125.64653 * 179.72486 * 10 8 7 30 30 H 1.08999 * 109.46967 * 60.00031 * 1 2 3 31 31 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46761 * 300.00207 * 1 2 3 33 33 H 1.09001 * 109.47046 * 240.00244 * 2 1 3 34 34 H 1.08996 * 109.47272 * 119.99553 * 2 1 3 35 35 H 1.07997 * 125.44036 * 179.79619 * 5 4 3 36 36 H 1.07994 * 127.02895 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.88768 * 300.51550 * 11 10 8 38 38 H 1.08998 * 109.87989 * 61.68548 * 11 10 8 39 39 H 1.09000 * 110.92786 * 264.10989 * 12 11 10 40 40 H 1.09003 * 110.58833 * 140.78736 * 12 11 10 41 41 H 1.08998 * 109.49719 * 292.70471 * 16 15 13 42 42 H 1.08996 * 109.49570 * 52.79177 * 16 15 13 43 43 H 1.09000 * 109.62827 * 294.11756 * 17 16 15 44 44 H 1.08998 * 109.79430 * 173.63796 * 17 16 15 45 45 H 0.97000 * 120.00272 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.63028 * 291.47267 * 27 18 17 47 47 H 1.09003 * 109.79482 * 170.98628 * 27 18 17 48 48 H 1.08995 * 109.49884 * 307.21696 * 28 15 13 49 49 H 1.09000 * 109.49237 * 67.29921 * 28 15 13 50 50 H 1.09003 * 110.36676 * 274.67166 * 29 10 8 51 51 H 1.08994 * 110.36877 * 36.88780 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2900 2.1590 -1.0840 5 6 2.7285 3.3797 -0.7392 6 6 2.7637 3.4723 0.5990 7 6 2.2984 2.1732 1.1063 8 6 2.1554 1.7666 2.5157 9 8 1.7560 0.6510 2.7892 10 7 2.4621 2.6330 3.5015 11 6 2.9595 4.0037 3.3135 12 6 3.1931 4.6028 4.7163 13 6 3.3607 3.3430 5.6064 14 1 4.3792 2.9585 5.5524 15 7 2.9810 3.6265 6.9969 16 6 3.8477 4.6598 7.5790 17 6 3.3099 5.0552 8.9584 18 7 3.1633 3.8370 9.7695 19 6 3.7022 3.7602 11.0260 20 1 4.5636 4.3596 11.2818 21 6 3.1415 2.9121 11.9710 22 7 3.8510 2.5223 13.0088 23 14 1.3800 2.3241 11.7700 24 1 1.3694 1.0355 11.0322 25 1 0.7659 2.1332 13.1086 26 1 0.6039 3.3364 11.0094 27 6 2.4223 2.7038 9.1954 28 6 2.9950 2.4010 7.8066 29 6 2.3606 2.3609 4.9468 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.0078 4.1627 -1.4286 36 1 3.0714 4.3264 1.1839 37 1 3.8957 3.9852 2.7556 38 1 2.2182 4.5968 2.7780 39 1 2.3327 5.1900 5.0371 40 1 4.1001 5.2072 4.7287 41 1 4.8603 4.2698 7.6816 42 1 3.8584 5.5344 6.9286 43 1 2.3401 5.5404 8.8480 44 1 4.0072 5.7373 9.4448 45 1 3.4593 1.9293 13.6690 46 1 1.3672 2.9629 9.1077 47 1 2.5323 1.8284 9.8356 48 1 2.3875 1.6372 7.3212 49 1 4.0196 2.0424 7.9060 50 1 1.3480 2.5569 5.2995 51 1 2.6428 1.3299 5.1595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052022916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:24 Heat of formation + Delta-G solvation = 5.348222 kcal Electronic energy + Delta-G solvation = -31196.215498 eV Core-core repulsion = 27097.600634 eV Total energy + Delta-G solvation = -4098.614864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.58891 -41.17980 -39.87554 -38.25796 -35.96315 -35.01981 -34.03412 -33.46943 -32.25742 -31.60094 -29.97077 -29.73793 -27.89200 -25.71543 -25.02030 -24.52120 -24.02079 -22.84576 -22.33183 -21.55385 -20.97240 -19.83135 -18.90246 -18.56788 -17.77255 -17.29618 -17.23795 -17.03878 -16.52931 -16.01274 -15.81862 -15.78165 -15.49299 -15.46312 -15.30328 -15.01134 -14.81628 -14.42645 -14.27333 -14.21758 -13.83498 -13.74175 -13.64607 -13.56465 -13.36307 -13.27035 -12.79743 -12.56080 -12.49106 -12.35805 -12.16783 -12.11410 -11.99950 -11.82478 -11.69708 -11.54077 -11.41480 -11.10340 -10.82418 -10.73657 -9.86075 -9.48537 -9.43518 -8.91678 -8.18222 -5.49164 0.28390 1.13536 1.28899 1.40060 1.49356 1.70492 1.98431 2.24193 2.40081 2.83958 3.05727 3.28809 3.35933 3.55317 3.62904 3.74118 3.89542 4.02960 4.09048 4.12395 4.20227 4.25498 4.26674 4.32478 4.39720 4.41640 4.45191 4.51441 4.57255 4.61209 4.70646 4.71413 4.75475 4.80238 4.85599 4.91104 4.93844 4.99693 5.00841 5.03831 5.07268 5.16695 5.23702 5.26308 5.30859 5.40446 5.81690 6.01523 6.04937 6.07278 6.17708 6.43288 6.88592 7.04256 7.59998 8.02674 9.01565 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002289 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.536084 B =12231.462753 C =13213.463395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.071 3.929 4 O -0.180 6.180 5 C -0.029 4.029 6 C -0.206 4.206 7 C -0.263 4.263 8 C 0.595 3.405 9 O -0.580 6.580 10 N -0.611 5.611 11 C 0.099 3.901 12 C -0.115 4.115 13 C 0.072 3.928 14 H 0.052 0.948 15 N -0.523 5.523 16 C 0.055 3.945 17 C 0.145 3.855 18 N -0.624 5.624 19 C -0.246 4.246 20 H 0.056 0.944 21 C -0.036 4.036 22 N -0.957 5.957 23 Si 0.945 3.055 24 H -0.276 1.276 25 H -0.311 1.311 26 H -0.263 1.263 27 C 0.127 3.873 28 C 0.052 3.948 29 C 0.119 3.881 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.188 0.812 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.022 0.978 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.261 0.739 46 H 0.035 0.965 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.024 0.976 50 H 0.071 0.929 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 4.686 -34.092 34.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C 0.017 3.983 4 O -0.076 6.076 5 C -0.094 4.094 6 C -0.225 4.225 7 C -0.267 4.267 8 C 0.387 3.613 9 O -0.462 6.462 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.037 4.037 14 H 0.070 0.930 15 N -0.248 5.248 16 C -0.074 4.074 17 C 0.020 3.980 18 N -0.349 5.349 19 C -0.375 4.375 20 H 0.074 0.926 21 C -0.231 4.231 22 N -0.603 5.603 23 Si 0.775 3.225 24 H -0.203 1.203 25 H -0.240 1.240 26 H -0.187 1.187 27 C 0.002 3.998 28 C -0.078 4.078 29 C -0.004 4.004 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.267 0.733 36 H 0.205 0.795 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.040 0.960 42 H 0.129 0.871 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.042 0.958 50 H 0.090 0.910 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.458 4.113 -34.159 34.579 hybrid contribution 0.233 -0.883 1.269 1.563 sum -3.225 3.230 -32.890 33.206 Atomic orbital electron populations 1.21644 0.92851 1.03372 1.01649 1.20396 0.97395 0.86212 1.05072 1.23019 0.97062 0.94865 0.83342 1.83788 1.65062 1.24182 1.34552 1.24794 1.01786 0.85812 0.96978 1.23620 1.05927 0.97641 0.95264 1.21102 1.15297 0.97959 0.92344 1.17246 0.76626 0.83176 0.84249 1.90742 1.49206 1.21805 1.84455 1.48194 1.65158 1.15398 1.05579 1.22599 1.00437 0.80846 0.98432 1.22774 1.04875 0.95984 0.91636 1.22732 0.96071 0.96804 0.88110 0.92997 1.61930 1.53108 1.09006 1.00795 1.22513 0.93215 0.95431 0.96243 1.21227 0.99034 0.87619 0.90080 1.44572 1.64236 1.11933 1.14162 1.18885 1.07559 1.23223 0.87842 0.92639 1.25866 1.01407 1.00029 0.95789 1.69956 1.37470 1.37389 1.15515 0.85946 0.82730 0.78637 0.75232 1.20333 1.23982 1.18707 1.21401 0.94773 0.90462 0.93201 1.22434 0.99148 0.92216 0.93973 1.22076 1.00037 0.98790 0.79476 0.91508 0.90036 0.94240 0.87867 0.88936 0.73323 0.79468 0.89098 0.88888 0.88869 0.87447 0.95955 0.87066 0.94326 0.91738 0.92985 0.94738 0.93139 0.89866 0.95788 0.91030 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.05 -0.94 5.94 29.85 0.18 -0.76 16 3 C 0.07 1.37 6.63 25.26 0.17 1.54 16 4 O -0.18 -2.82 10.52 4.47 0.05 -2.77 16 5 C -0.03 -0.28 12.03 66.89 0.80 0.52 16 6 C -0.21 -2.64 9.42 23.65 0.22 -2.42 16 7 C -0.26 -5.48 6.25 -18.99 -0.12 -5.60 16 8 C 0.59 15.73 7.84 86.65 0.68 16.41 16 9 O -0.58 -19.19 15.10 -4.08 -0.06 -19.25 16 10 N -0.61 -13.70 3.33 -815.75 -2.71 -16.41 16 11 C 0.10 1.34 4.99 86.73 0.43 1.77 16 12 C -0.11 -1.65 5.34 31.78 0.17 -1.48 16 13 C 0.07 1.62 2.71 46.31 0.13 1.74 16 14 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 15 N -0.52 -15.05 4.53 -861.92 -3.90 -18.96 16 16 C 0.05 1.56 5.48 86.39 0.47 2.04 16 17 C 0.15 5.37 6.69 86.35 0.58 5.94 16 18 N -0.62 -29.52 2.82 -698.14 -1.97 -31.49 16 19 C -0.25 -14.02 10.08 84.03 0.85 -13.17 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 21 C -0.04 -2.15 5.24 84.86 0.44 -1.71 16 22 N -0.96 -60.87 13.97 21.65 0.30 -60.57 16 23 Si 0.95 47.72 24.31 68.60 1.67 49.39 16 24 H -0.28 -13.28 6.58 99.48 0.65 -12.63 16 25 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 26 H -0.26 -12.79 6.61 99.48 0.66 -12.13 16 27 C 0.13 5.52 4.35 86.35 0.38 5.90 16 28 C 0.05 1.82 5.48 86.39 0.47 2.29 16 29 C 0.12 3.00 5.32 86.86 0.46 3.46 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.03 6.49 -2.39 -0.02 2.02 16 35 H 0.25 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.19 1.36 4.87 -2.91 -0.01 1.34 16 37 H 0.09 0.93 6.89 -2.39 -0.02 0.91 16 38 H 0.09 0.95 6.99 -2.39 -0.02 0.94 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.07 7.94 -2.39 -0.02 1.05 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 2.28 6.87 -2.39 -0.02 2.27 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 44 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.03 1.50 6.94 -2.39 -0.02 1.48 16 47 H 0.05 2.43 4.61 -2.39 -0.01 2.42 16 48 H 0.08 2.64 6.79 -2.39 -0.02 2.62 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.06 1.68 7.74 -2.39 -0.02 1.66 16 Total: -1.00 -77.39 388.47 1.23 -76.16 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.83 Total: 8.93 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.03 Total: 14.97 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -8.28 Total: -127.43 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.01 Total: -22.02 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.67 Total: 49.39 kcal Total: -77.39 1.23 -76.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052022916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.510 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds