Wall clock time and date at job start Wed Apr 1 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47248 * 2 1 4 4 C 1.35132 * 125.62213 * 89.97489 * 3 2 1 5 5 C 1.40366 * 107.11933 * 179.77976 * 4 3 2 6 6 C 1.36547 * 106.70405 * 0.35148 * 5 4 3 7 7 C 1.46657 * 125.98670 * 179.91037 * 6 5 4 8 8 O 1.21698 * 119.99899 * 359.71440 * 7 6 5 9 9 N 1.34775 * 120.00305 * 179.71671 * 7 6 5 10 10 C 1.47022 * 125.64688 * 359.69169 * 9 7 6 11 11 C 1.54329 * 107.26734 * 178.85150 * 10 9 7 12 12 C 1.55160 * 103.01746 * 338.13774 * 11 10 9 13 13 H 1.08997 * 111.03569 * 277.21928 * 12 11 10 14 14 N 1.46906 * 111.00436 * 153.38423 * 12 11 10 15 15 C 1.46891 * 110.99988 * 186.41239 * 14 12 11 16 16 C 1.53242 * 109.33770 * 172.74534 * 15 14 12 17 17 N 1.47073 * 108.52230 * 53.83004 * 16 15 14 18 18 C 1.36939 * 120.88700 * 128.79399 * 17 16 15 19 19 H 1.07995 * 120.00449 * 209.22962 * 18 17 16 20 20 C 1.38817 * 119.99575 * 29.22492 * 18 17 16 21 21 N 1.31623 * 120.00109 * 13.12062 * 20 18 17 22 22 Si 1.86797 * 119.99981 * 193.11741 * 20 18 17 23 23 H 1.48498 * 109.47245 * 60.00361 * 22 20 18 24 24 H 1.48501 * 109.47259 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47143 * 300.00225 * 22 20 18 26 26 C 1.47085 * 118.23712 * 308.81426 * 17 16 15 27 27 C 1.46896 * 110.99892 * 62.10257 * 14 12 11 28 28 C 1.47421 * 125.65214 * 179.97438 * 9 7 6 29 29 O 1.33934 * 125.61244 * 269.97425 * 3 2 1 30 30 H 1.09004 * 109.46911 * 300.00320 * 1 2 3 31 31 H 1.08994 * 109.46702 * 59.99811 * 1 2 3 32 32 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47106 * 239.99415 * 2 1 3 34 34 H 1.09003 * 109.46595 * 119.99898 * 2 1 3 35 35 H 1.08001 * 126.44034 * 0.02562 * 4 3 2 36 36 H 1.07992 * 126.64788 * 180.22346 * 5 4 3 37 37 H 1.08998 * 109.88172 * 298.39802 * 10 9 7 38 38 H 1.09006 * 109.88219 * 59.55933 * 10 9 7 39 39 H 1.08999 * 110.85237 * 219.67404 * 11 10 9 40 40 H 1.08993 * 110.52141 * 96.44949 * 11 10 9 41 41 H 1.09001 * 109.49521 * 292.70344 * 15 14 12 42 42 H 1.09001 * 109.49394 * 52.78480 * 15 14 12 43 43 H 1.08994 * 109.62782 * 294.11395 * 16 15 14 44 44 H 1.09002 * 109.62558 * 173.53413 * 16 15 14 45 45 H 0.97001 * 119.99994 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.62404 * 291.47672 * 26 17 16 47 47 H 1.08996 * 109.62867 * 170.90092 * 26 17 16 48 48 H 1.08995 * 109.49941 * 307.21924 * 27 14 12 49 49 H 1.09006 * 109.49096 * 67.27668 * 27 14 12 50 50 H 1.09001 * 110.36499 * 322.93385 * 28 9 7 51 51 H 1.09004 * 110.36350 * 85.14153 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2943 2.1629 1.0985 5 6 2.7431 3.4161 0.6530 6 6 2.7246 3.3772 -0.7118 7 6 3.1121 4.4696 -1.6103 8 8 3.4878 5.5317 -1.1502 9 7 3.0521 4.2973 -2.9457 10 6 2.6247 3.0698 -3.6329 11 6 2.6901 3.3474 -5.1496 12 6 2.6172 4.8955 -5.2250 13 1 1.5852 5.2417 -5.1690 14 7 3.2718 5.3948 -6.4416 15 6 3.3375 6.8623 -6.4395 16 6 4.1822 7.3341 -7.6279 17 7 3.6351 6.7377 -8.8560 18 6 3.3414 7.5150 -9.9444 19 1 2.5528 7.2208 -10.6211 20 6 4.0572 8.6812 -10.1779 21 7 5.1730 8.9117 -9.5189 22 14 3.4370 9.9234 -11.4276 23 1 2.0914 10.4035 -11.0224 24 1 4.3750 11.0730 -11.4904 25 1 3.3518 9.2811 -12.7638 26 6 3.4115 5.2842 -8.8839 27 6 2.5973 4.8931 -7.6461 28 6 3.4096 5.3063 -3.9592 29 8 2.2929 2.1559 -1.0888 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1834 1.8494 2.1260 36 1 3.0428 4.2502 1.2701 37 1 3.2936 2.2487 -3.3752 38 1 1.6025 2.8216 -3.3470 39 1 1.8416 2.8959 -5.6636 40 1 3.6307 2.9851 -5.5641 41 1 2.3307 7.2715 -6.5237 42 1 3.7933 7.2047 -5.5105 43 1 5.2150 7.0129 -7.4934 44 1 4.1400 8.4210 -7.6985 45 1 5.6734 9.7264 -9.6823 46 1 4.3704 4.7660 -8.8702 47 1 2.8600 5.0159 -9.7850 48 1 2.5162 3.8075 -7.5922 49 1 1.6006 5.3294 -7.7133 50 1 3.1074 6.3000 -3.6283 51 1 4.4814 5.2826 -4.1565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052045709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:30 Heat of formation + Delta-G solvation = 17.454561 kcal Electronic energy + Delta-G solvation = -30847.097398 eV Core-core repulsion = 26749.007505 eV Total energy + Delta-G solvation = -4098.089893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.02492 -40.10881 -38.46828 -36.84236 -34.73395 -34.16698 -33.18517 -31.70380 -30.79278 -29.93819 -29.38423 -28.35605 -26.11051 -24.79797 -23.64916 -22.93123 -22.45566 -21.97021 -21.08294 -20.42954 -19.94517 -19.15143 -17.88710 -17.14868 -16.79541 -16.36427 -16.00558 -15.61315 -14.98521 -14.82845 -14.59470 -14.43911 -14.09737 -13.93329 -13.55554 -13.51226 -13.47243 -13.41072 -13.30088 -13.10929 -12.87919 -12.77537 -12.61559 -12.33840 -12.08535 -11.74611 -11.56560 -11.44381 -11.20288 -11.00801 -10.90501 -10.73351 -10.46101 -10.44254 -10.32903 -10.28130 -10.03580 -9.74738 -9.60008 -8.99620 -8.68275 -8.50514 -7.91076 -6.62491 -5.77083 -3.22183 0.78166 2.01047 2.25925 2.79356 2.98627 3.38612 3.44357 3.45078 4.03948 4.20839 4.31466 4.50168 4.53550 4.57539 4.59908 4.68759 4.72935 4.92773 4.96766 5.21244 5.25667 5.28752 5.31046 5.35562 5.41299 5.45456 5.46768 5.52841 5.57248 5.68243 5.70162 5.80494 5.83614 5.90644 5.92190 5.99898 6.05430 6.12249 6.15974 6.26092 6.33234 6.52386 6.60942 6.68966 6.92033 7.21444 7.25800 7.54810 7.63729 7.70429 7.81109 7.84186 8.46109 9.22572 9.84688 10.44213 11.31527 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.002017 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.414176 B =13875.468685 C =14621.547391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.018 3.982 4 C -0.220 4.220 5 C -0.119 4.119 6 C -0.072 4.072 7 C 0.615 3.385 8 O -0.521 6.521 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.051 0.949 14 N -0.520 5.520 15 C 0.032 3.968 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 C 0.045 3.955 28 C 0.117 3.883 29 O -0.156 6.156 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.088 0.912 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.080 0.920 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -19.399 20.010 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.035 4.035 4 C -0.239 4.239 5 C -0.139 4.139 6 C -0.124 4.124 7 C 0.403 3.597 8 O -0.399 6.399 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.161 4.161 12 C -0.041 4.041 13 H 0.069 0.931 14 N -0.246 5.246 15 C -0.097 4.097 16 C 0.054 3.946 17 N -0.319 5.319 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.084 4.084 28 C -0.005 4.005 29 O -0.052 6.052 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.098 0.902 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.593 -18.912 19.947 28.517 hybrid contribution -1.091 1.013 -0.374 1.535 sum -8.684 -17.899 19.573 27.909 Atomic orbital electron populations 1.21799 0.93518 1.02650 1.02901 1.20200 0.96662 0.86997 1.04585 1.22868 1.01225 0.95117 0.84275 1.21568 1.08275 0.94329 0.99773 1.21939 1.00264 0.98882 0.92856 1.21968 1.10568 0.85471 0.94415 1.16142 0.78366 0.85146 0.80026 1.90903 1.48282 1.25392 1.75314 1.48291 1.65081 1.16142 1.04562 1.22113 1.00236 0.86818 0.92575 1.22718 1.03942 0.95814 0.93609 1.22733 0.95935 0.94580 0.90820 0.93068 1.62020 1.51583 1.10873 1.00098 1.22980 0.99930 0.85531 1.01283 1.20854 0.93165 0.98945 0.81666 1.44082 1.75489 1.00576 1.11717 1.19124 1.12148 1.03632 1.03417 0.91846 1.25118 0.95255 1.00438 0.98779 1.69979 1.14309 1.26379 1.44156 0.86345 0.77952 0.80990 0.81280 1.21088 1.21594 1.20893 1.20979 0.96496 0.86684 0.93607 1.22636 0.96156 0.98196 0.91432 1.22306 1.00718 0.91676 0.85843 1.84100 1.64528 1.21979 1.34633 0.92036 0.92076 0.91320 0.89617 0.88486 0.82749 0.82230 0.90918 0.91209 0.90049 0.89102 0.95548 0.91901 0.95446 0.89352 0.93514 0.95634 0.92615 0.91823 0.95405 0.90178 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.90 37.16 0.37 -0.28 16 2 C -0.05 -0.22 6.47 -27.88 -0.18 -0.40 16 3 C 0.02 0.14 6.57 -35.42 -0.23 -0.09 16 4 C -0.22 -1.83 10.77 -39.89 -0.43 -2.26 16 5 C -0.12 -1.27 10.62 -39.39 -0.42 -1.69 16 6 C -0.07 -0.88 6.95 -36.80 -0.26 -1.14 16 7 C 0.61 8.93 7.82 -12.86 -0.10 8.82 16 8 O -0.52 -9.10 17.12 5.19 0.09 -9.01 16 9 N -0.61 -8.07 3.33 -172.08 -0.57 -8.64 16 10 C 0.11 1.11 5.55 -3.06 -0.02 1.09 16 11 C -0.12 -1.33 5.34 -24.89 -0.13 -1.47 16 12 C 0.07 0.95 2.72 -65.57 -0.18 0.78 16 13 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 14 N -0.52 -8.82 4.53 -223.80 -1.01 -9.83 16 15 C 0.03 0.61 5.48 -3.70 -0.02 0.59 16 16 C 0.18 4.32 5.38 -3.60 -0.02 4.30 16 17 N -0.60 -14.97 3.03 -172.02 -0.52 -15.49 16 18 C -0.25 -6.96 9.63 -15.06 -0.14 -7.10 16 19 H 0.06 1.70 7.86 -52.49 -0.41 1.29 16 20 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 21 N -0.90 -26.30 11.11 55.49 0.62 -25.68 16 22 Si 0.90 21.74 29.57 -169.99 -5.03 16.72 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.15 3.10 6.69 -3.60 -0.02 3.07 16 27 C 0.05 0.77 5.48 -3.70 -0.02 0.75 16 28 C 0.12 1.66 5.31 -2.55 -0.01 1.64 16 29 O -0.16 -1.63 8.28 4.97 0.04 -1.59 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 38 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.12 6.79 -51.93 -0.35 0.77 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.36 6.20 -51.93 -0.32 2.04 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 48 H 0.06 0.90 6.87 -51.93 -0.36 0.54 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 51 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -32.16 402.90 -10.75 -42.91 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.53 Total: -2.08 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.91 Total: 6.63 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.49 Total: -59.65 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.13 Total: -10.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.16 -10.75 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052045709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.364 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds