Wall clock time and date at job start Wed Apr 1 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47012 * 2 1 4 4 C 1.35125 * 125.61643 * 89.72317 * 3 2 1 5 5 C 1.40360 * 107.11553 * 180.26145 * 4 3 2 6 6 C 1.36540 * 106.70876 * 359.97438 * 5 4 3 7 7 C 1.46655 * 125.99058 * 180.02562 * 6 5 4 8 8 O 1.21705 * 120.00162 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.47021 * 125.64519 * 359.68434 * 9 7 6 11 11 C 1.54320 * 107.27298 * 180.96992 * 10 9 7 12 12 C 1.55158 * 102.86385 * 22.53164 * 11 10 9 13 13 H 1.08993 * 111.03589 * 82.38800 * 12 11 10 14 14 N 1.46903 * 111.00008 * 206.22917 * 12 11 10 15 15 C 1.46897 * 111.00138 * 297.94704 * 14 12 11 16 16 C 1.53234 * 109.34234 * 172.74812 * 15 14 12 17 17 N 1.47081 * 108.51819 * 53.83184 * 16 15 14 18 18 C 1.36935 * 120.88015 * 128.83911 * 17 16 15 19 19 H 1.08004 * 119.99848 * 206.62597 * 18 17 16 20 20 C 1.38813 * 120.00515 * 26.62206 * 18 17 16 21 21 N 1.31617 * 119.99512 * 17.03998 * 20 18 17 22 22 Si 1.86793 * 120.00403 * 197.04162 * 20 18 17 23 23 H 1.48499 * 109.47165 * 60.00092 * 22 20 18 24 24 H 1.48507 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47185 * 299.99939 * 22 20 18 26 26 C 1.47076 * 118.23742 * 308.81174 * 17 16 15 27 27 C 1.46896 * 110.99612 * 173.64755 * 14 12 11 28 28 C 1.47422 * 125.65080 * 179.97438 * 9 7 6 29 29 O 1.33926 * 125.61385 * 270.01880 * 3 2 1 30 30 H 1.09002 * 109.47085 * 300.00050 * 1 2 3 31 31 H 1.09002 * 109.46995 * 59.99993 * 1 2 3 32 32 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46703 * 240.00226 * 2 1 3 34 34 H 1.09002 * 109.46995 * 120.00007 * 2 1 3 35 35 H 1.08006 * 126.44195 * 0.23448 * 4 3 2 36 36 H 1.07999 * 126.64653 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.88617 * 300.51636 * 10 9 7 38 38 H 1.09002 * 109.87901 * 61.68616 * 10 9 7 39 39 H 1.08999 * 110.92254 * 264.11172 * 11 10 9 40 40 H 1.09001 * 110.73800 * 140.86163 * 11 10 9 41 41 H 1.08999 * 109.49300 * 292.71521 * 15 14 12 42 42 H 1.09006 * 109.49427 * 52.78751 * 15 14 12 43 43 H 1.08993 * 109.62861 * 294.12437 * 16 15 14 44 44 H 1.09001 * 109.78753 * 173.63586 * 16 15 14 45 45 H 0.97001 * 120.00124 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.63566 * 291.47772 * 26 17 16 47 47 H 1.09000 * 109.78697 * 170.98759 * 26 17 16 48 48 H 1.08999 * 109.49653 * 307.20857 * 27 14 12 49 49 H 1.09003 * 109.49508 * 67.29025 * 27 14 12 50 50 H 1.08999 * 110.36665 * 274.67314 * 28 9 7 51 51 H 1.09005 * 110.36867 * 36.88610 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2896 2.1645 1.0985 5 6 2.7295 3.4208 0.6531 6 6 2.7188 3.3793 -0.7117 7 6 3.1036 4.4726 -1.6102 8 8 3.4740 5.5367 -1.1500 9 7 3.0462 4.2994 -2.9456 10 6 2.6245 3.0700 -3.6327 11 6 2.7425 3.3293 -5.1494 12 6 3.7683 4.4910 -5.2225 13 1 4.7897 4.1154 -5.1622 14 7 3.5745 5.2887 -6.4408 15 6 3.7899 4.4734 -7.6436 16 6 3.4040 5.2866 -8.8837 17 7 4.1401 6.5596 -8.8552 18 6 4.8587 6.9804 -9.9423 19 1 5.7058 7.6370 -9.8084 20 6 4.4986 6.5632 -11.2163 21 7 3.3033 6.0547 -11.4288 22 14 5.7101 6.7233 -12.6290 23 1 6.9315 5.9352 -12.3253 24 1 5.0876 6.2100 -13.8757 25 1 6.0747 8.1516 -12.8089 26 6 4.0834 7.3689 -7.6285 27 6 4.4426 6.4737 -6.4377 28 6 3.4015 5.3093 -3.9590 29 8 2.2919 2.1562 -1.0888 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1774 1.8513 2.1260 36 1 3.0209 4.2578 1.2702 37 1 3.2734 2.2430 -3.3445 38 1 1.5903 2.8388 -3.3775 39 1 1.7834 3.6346 -5.5678 40 1 3.1224 2.4464 -5.6635 41 1 4.8404 4.1894 -7.7072 42 1 3.1729 3.5763 -7.5904 43 1 2.3320 5.4832 -8.8736 44 1 3.6661 4.7321 -9.7848 45 1 3.0514 5.7635 -12.3191 46 1 3.0767 7.7657 -7.4976 47 1 4.7953 8.1916 -7.6959 48 1 4.2989 7.0275 -5.5100 49 1 5.4840 6.1619 -6.5181 50 1 2.5503 5.9593 -4.1616 51 1 4.2562 5.8977 -3.6250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052045711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:33 Heat of formation + Delta-G solvation = 17.924481 kcal Electronic energy + Delta-G solvation = -30833.339513 eV Core-core repulsion = 26735.269997 eV Total energy + Delta-G solvation = -4098.069516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.03386 -40.12357 -38.48006 -36.85546 -34.73259 -34.17838 -33.19207 -31.77535 -30.44893 -30.29067 -29.39794 -28.28256 -26.13688 -24.80143 -23.68314 -22.87047 -22.49707 -21.97708 -21.08613 -20.43790 -19.95890 -19.15703 -17.90898 -17.17107 -16.74824 -16.33801 -16.16374 -15.51801 -14.96546 -14.83830 -14.72507 -14.34033 -14.10295 -13.94284 -13.54429 -13.52730 -13.47537 -13.36752 -13.32004 -13.16856 -12.89649 -12.76887 -12.62721 -12.34842 -12.07416 -11.84035 -11.56189 -11.30981 -11.22542 -11.05485 -10.89501 -10.73145 -10.48242 -10.44030 -10.33717 -10.30008 -10.05170 -9.73476 -9.61408 -9.01010 -8.69313 -8.50949 -7.91679 -6.67241 -5.78591 -3.19454 0.77144 2.00261 2.25217 2.78064 2.96833 3.38308 3.43932 3.45172 4.03421 4.21037 4.31056 4.50005 4.53800 4.57164 4.59868 4.69289 4.72748 4.93158 4.98518 5.20115 5.25715 5.28025 5.32037 5.35131 5.39107 5.44962 5.46169 5.52434 5.57486 5.69139 5.69608 5.80341 5.83202 5.87768 5.93639 6.00290 6.04728 6.13123 6.15964 6.24410 6.31948 6.51701 6.60256 6.67882 6.92577 7.19559 7.23719 7.53920 7.61306 7.67703 7.80480 7.82050 8.43202 9.21031 9.84316 10.42745 11.30309 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.002017 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.136970 B =13879.314876 C =14699.975716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.019 3.981 4 C -0.221 4.221 5 C -0.119 4.119 6 C -0.073 4.073 7 C 0.615 3.385 8 O -0.523 6.523 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.052 0.948 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.178 3.822 17 N -0.595 5.595 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.117 3.883 29 O -0.156 6.156 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.085 0.915 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -13.998 23.777 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C -0.034 4.034 4 C -0.240 4.240 5 C -0.139 4.139 6 C -0.125 4.125 7 C 0.404 3.596 8 O -0.401 6.401 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.161 4.161 12 C -0.041 4.041 13 H 0.070 0.930 14 N -0.246 5.246 15 C -0.092 4.092 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.023 3.977 27 C -0.088 4.088 28 C -0.005 4.005 29 O -0.052 6.052 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.103 0.897 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.900 -13.375 23.566 27.536 hybrid contribution 1.450 -0.237 -0.532 1.563 sum -3.450 -13.612 23.034 26.977 Atomic orbital electron populations 1.21801 0.93464 1.02682 1.02931 1.20205 0.96703 0.86983 1.04579 1.22877 1.01128 0.95121 0.84265 1.21566 1.08424 0.94224 0.99779 1.21931 1.00291 0.98855 0.92847 1.21951 1.10752 0.85387 0.94399 1.16142 0.78296 0.85166 0.80021 1.90896 1.48509 1.25330 1.75354 1.48292 1.65101 1.16101 1.04544 1.22120 1.00435 0.86592 0.92600 1.22715 1.01274 0.98602 0.93490 1.22752 0.97265 0.93432 0.90663 0.93048 1.62025 1.54524 1.07506 1.00522 1.22914 0.98484 0.96264 0.91577 1.20866 0.94497 0.86121 0.93316 1.44115 1.58100 1.18508 1.11137 1.19152 1.06222 1.28096 0.84642 0.91702 1.25021 0.95844 1.01641 0.97259 1.70015 1.17257 1.46325 1.21240 0.86361 0.80712 0.77942 0.81705 1.21144 1.21627 1.20897 1.20964 0.98476 0.92409 0.85897 1.22685 0.94046 0.92179 0.99935 1.22316 1.01573 0.90696 0.85952 1.84102 1.64588 1.21874 1.34635 0.92030 0.92025 0.91302 0.89618 0.88495 0.82743 0.82247 0.91153 0.90894 0.88983 0.89956 0.95628 0.91870 0.95534 0.89277 0.93577 0.95598 0.92561 0.91808 0.95254 0.89672 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.05 -0.23 6.47 -27.88 -0.18 -0.41 16 3 C 0.02 0.15 6.57 -35.41 -0.23 -0.08 16 4 C -0.22 -1.82 10.77 -39.89 -0.43 -2.25 16 5 C -0.12 -1.25 10.62 -39.40 -0.42 -1.66 16 6 C -0.07 -0.88 6.95 -36.80 -0.26 -1.14 16 7 C 0.62 8.75 7.82 -12.86 -0.10 8.65 16 8 O -0.52 -8.88 17.12 5.18 0.09 -8.79 16 9 N -0.61 -7.93 3.33 -172.05 -0.57 -8.50 16 10 C 0.11 1.12 5.54 -3.07 -0.02 1.11 16 11 C -0.12 -1.39 5.35 -24.90 -0.13 -1.52 16 12 C 0.07 0.94 2.71 -65.55 -0.18 0.77 16 13 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 14 N -0.52 -8.80 4.53 -223.77 -1.01 -9.81 16 15 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 16 C 0.18 4.20 5.42 -3.60 -0.02 4.18 16 17 N -0.60 -14.95 3.04 -172.02 -0.52 -15.47 16 18 C -0.25 -6.90 9.63 -15.06 -0.15 -7.04 16 19 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 20 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 21 N -0.90 -26.04 11.15 55.49 0.62 -25.42 16 22 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 27 C 0.04 0.72 5.48 -3.70 -0.02 0.70 16 28 C 0.12 1.59 5.32 -2.52 -0.01 1.58 16 29 O -0.16 -1.63 8.28 5.00 0.04 -1.59 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 38 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.03 6.87 -51.93 -0.36 0.67 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 2.33 6.11 -51.93 -0.32 2.01 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 48 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -31.91 402.87 -10.75 -42.66 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.52 Total: -2.07 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.91 Total: 6.32 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -1.49 Total: -59.20 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.13 Total: -10.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.91 -10.75 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052045711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.586 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds