Wall clock time and date at job start Wed Apr 1 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47012 * 2 1 4 4 C 1.35125 * 125.61643 * 89.72317 * 3 2 1 5 5 C 1.40360 * 107.11553 * 180.26145 * 4 3 2 6 6 C 1.36540 * 106.70876 * 359.97438 * 5 4 3 7 7 C 1.46655 * 125.99058 * 180.02562 * 6 5 4 8 8 O 1.21705 * 120.00162 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.47021 * 125.64519 * 359.68434 * 9 7 6 11 11 C 1.54320 * 107.27298 * 180.96992 * 10 9 7 12 12 C 1.55158 * 102.86385 * 22.53164 * 11 10 9 13 13 H 1.08993 * 111.03589 * 82.38800 * 12 11 10 14 14 N 1.46903 * 111.00008 * 206.22917 * 12 11 10 15 15 C 1.46897 * 111.00138 * 297.94704 * 14 12 11 16 16 C 1.53234 * 109.34234 * 172.74812 * 15 14 12 17 17 N 1.47081 * 108.51819 * 53.83184 * 16 15 14 18 18 C 1.36935 * 120.88015 * 128.83911 * 17 16 15 19 19 H 1.08004 * 119.99848 * 206.62597 * 18 17 16 20 20 C 1.38813 * 120.00515 * 26.62206 * 18 17 16 21 21 N 1.31617 * 119.99512 * 17.03998 * 20 18 17 22 22 Si 1.86793 * 120.00403 * 197.04162 * 20 18 17 23 23 H 1.48499 * 109.47165 * 60.00092 * 22 20 18 24 24 H 1.48507 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47185 * 299.99939 * 22 20 18 26 26 C 1.47076 * 118.23742 * 308.81174 * 17 16 15 27 27 C 1.46896 * 110.99612 * 173.64755 * 14 12 11 28 28 C 1.47422 * 125.65080 * 179.97438 * 9 7 6 29 29 O 1.33926 * 125.61385 * 270.01880 * 3 2 1 30 30 H 1.09002 * 109.47085 * 300.00050 * 1 2 3 31 31 H 1.09002 * 109.46995 * 59.99993 * 1 2 3 32 32 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46703 * 240.00226 * 2 1 3 34 34 H 1.09002 * 109.46995 * 120.00007 * 2 1 3 35 35 H 1.08006 * 126.44195 * 0.23448 * 4 3 2 36 36 H 1.07999 * 126.64653 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.88617 * 300.51636 * 10 9 7 38 38 H 1.09002 * 109.87901 * 61.68616 * 10 9 7 39 39 H 1.08999 * 110.92254 * 264.11172 * 11 10 9 40 40 H 1.09001 * 110.73800 * 140.86163 * 11 10 9 41 41 H 1.08999 * 109.49300 * 292.71521 * 15 14 12 42 42 H 1.09006 * 109.49427 * 52.78751 * 15 14 12 43 43 H 1.08993 * 109.62861 * 294.12437 * 16 15 14 44 44 H 1.09001 * 109.78753 * 173.63586 * 16 15 14 45 45 H 0.97001 * 120.00124 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.63566 * 291.47772 * 26 17 16 47 47 H 1.09000 * 109.78697 * 170.98759 * 26 17 16 48 48 H 1.08999 * 109.49653 * 307.20857 * 27 14 12 49 49 H 1.09003 * 109.49508 * 67.29025 * 27 14 12 50 50 H 1.08999 * 110.36665 * 274.67314 * 28 9 7 51 51 H 1.09005 * 110.36867 * 36.88610 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2896 2.1645 1.0985 5 6 2.7295 3.4208 0.6531 6 6 2.7188 3.3793 -0.7117 7 6 3.1036 4.4726 -1.6102 8 8 3.4740 5.5367 -1.1500 9 7 3.0462 4.2994 -2.9456 10 6 2.6245 3.0700 -3.6327 11 6 2.7425 3.3293 -5.1494 12 6 3.7683 4.4910 -5.2225 13 1 4.7897 4.1154 -5.1622 14 7 3.5745 5.2887 -6.4408 15 6 3.7899 4.4734 -7.6436 16 6 3.4040 5.2866 -8.8837 17 7 4.1401 6.5596 -8.8552 18 6 4.8587 6.9804 -9.9423 19 1 5.7058 7.6370 -9.8084 20 6 4.4986 6.5632 -11.2163 21 7 3.3033 6.0547 -11.4288 22 14 5.7101 6.7233 -12.6290 23 1 6.9315 5.9352 -12.3253 24 1 5.0876 6.2100 -13.8757 25 1 6.0747 8.1516 -12.8089 26 6 4.0834 7.3689 -7.6285 27 6 4.4426 6.4737 -6.4377 28 6 3.4015 5.3093 -3.9590 29 8 2.2919 2.1562 -1.0888 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1774 1.8513 2.1260 36 1 3.0209 4.2578 1.2702 37 1 3.2734 2.2430 -3.3445 38 1 1.5903 2.8388 -3.3775 39 1 1.7834 3.6346 -5.5678 40 1 3.1224 2.4464 -5.6635 41 1 4.8404 4.1894 -7.7072 42 1 3.1729 3.5763 -7.5904 43 1 2.3320 5.4832 -8.8736 44 1 3.6661 4.7321 -9.7848 45 1 3.0514 5.7635 -12.3191 46 1 3.0767 7.7657 -7.4976 47 1 4.7953 8.1916 -7.6959 48 1 4.2989 7.0275 -5.5100 49 1 5.4840 6.1619 -6.5181 50 1 2.5503 5.9593 -4.1616 51 1 4.2562 5.8977 -3.6250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052045711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:32 Heat of formation + Delta-G solvation = -1.622291 kcal Electronic energy + Delta-G solvation = -30834.187125 eV Core-core repulsion = 26735.269997 eV Total energy + Delta-G solvation = -4098.917128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.76424 -41.20861 -39.81761 -38.21586 -35.89566 -35.15006 -33.90150 -33.44843 -31.85117 -31.79688 -30.33948 -29.40672 -27.74179 -25.75368 -24.76849 -24.50450 -23.67475 -22.86795 -21.80898 -21.64272 -20.88228 -20.80432 -18.91186 -18.77065 -17.83459 -17.37910 -17.13577 -16.83569 -16.32217 -15.95805 -15.73241 -15.55405 -15.28421 -15.24735 -15.15340 -14.93991 -14.64863 -14.38949 -14.08309 -14.03218 -13.94010 -13.80425 -13.68146 -13.31535 -13.24817 -12.98057 -12.69895 -12.58579 -12.53883 -12.44200 -12.21466 -12.02986 -11.93068 -11.90294 -11.83863 -11.56714 -11.45656 -11.35112 -11.06664 -10.57563 -9.97977 -9.48642 -9.34493 -8.68190 -7.87519 -5.31773 -0.06026 1.30881 1.42185 1.47056 1.48870 1.55959 1.88808 2.00430 2.50976 2.91359 3.21270 3.27637 3.53518 3.58640 3.68790 3.81794 3.91161 4.01671 4.15450 4.22769 4.25292 4.31771 4.35529 4.35733 4.47966 4.52693 4.56604 4.57906 4.62291 4.67849 4.72575 4.80651 4.83241 4.87348 4.90322 4.96402 4.99104 5.04836 5.05082 5.12192 5.18758 5.19829 5.34666 5.37428 5.44517 5.61342 5.70741 5.87008 6.10866 6.19460 6.25006 6.37838 6.78430 7.13974 7.84185 8.38199 9.19135 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.002017 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.136970 B =13879.314876 C =14699.975716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.028 3.972 4 C -0.225 4.225 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.611 3.389 8 O -0.563 6.563 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.055 0.945 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.185 3.815 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.145 3.855 27 C 0.053 3.947 28 C 0.121 3.879 29 O -0.162 6.162 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.183 0.817 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.000 1.000 44 H 0.059 0.941 45 H 0.251 0.749 46 H 0.016 0.984 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.025 0.975 50 H 0.077 0.923 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -16.386 25.587 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.025 4.025 4 C -0.243 4.243 5 C -0.139 4.139 6 C -0.157 4.157 7 C 0.402 3.598 8 O -0.445 6.445 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.153 4.153 12 C -0.037 4.037 13 H 0.073 0.927 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.059 3.941 17 N -0.339 5.339 18 C -0.395 4.395 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.019 3.981 27 C -0.076 4.076 28 C -0.002 4.002 29 O -0.058 6.058 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.201 0.799 36 H 0.178 0.822 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.018 0.982 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.043 0.957 50 H 0.095 0.905 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.757 -15.779 25.396 30.274 hybrid contribution 1.332 0.481 -0.993 1.729 sum -3.425 -15.297 24.403 29.004 Atomic orbital electron populations 1.21802 0.93085 1.03638 1.02253 1.20439 0.96836 0.84829 1.06234 1.23678 0.99074 0.96086 0.83666 1.21898 1.08069 0.93079 1.01281 1.22198 0.99271 0.99909 0.92503 1.21588 1.13707 0.85967 0.94413 1.16431 0.77688 0.85325 0.80367 1.90856 1.50527 1.27034 1.76091 1.48348 1.64739 1.16652 1.04319 1.22196 1.01334 0.85886 0.91682 1.22711 1.00243 0.98167 0.94180 1.22725 0.98253 0.93828 0.88845 0.92746 1.61927 1.54400 1.07612 1.01183 1.22581 0.98474 0.96256 0.90123 1.20654 0.92767 0.86070 0.94642 1.44407 1.58059 1.19641 1.11753 1.19471 1.06433 1.27893 0.85691 0.91715 1.25778 0.97368 1.01882 0.99579 1.70172 1.18858 1.47505 1.21434 0.85330 0.78571 0.78002 0.78456 1.20494 1.21851 1.20298 1.21088 0.98053 0.93029 0.85882 1.22486 0.93758 0.92246 0.99132 1.22168 1.00949 0.90870 0.86194 1.84078 1.64774 1.21373 1.35592 0.92060 0.93388 0.89557 0.88805 0.86006 0.79933 0.82150 0.89838 0.89876 0.89386 0.88033 0.96191 0.89094 0.98164 0.92277 0.93999 0.96553 0.92320 0.89428 0.95709 0.90484 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.16 16 2 C -0.05 -0.28 6.47 29.85 0.19 -0.09 16 3 C 0.03 0.38 6.57 24.97 0.16 0.54 16 4 C -0.22 -3.13 10.77 22.07 0.24 -2.89 16 5 C -0.12 -2.36 10.62 22.39 0.24 -2.12 16 6 C -0.11 -2.47 6.95 24.07 0.17 -2.30 16 7 C 0.61 17.39 7.82 86.44 0.68 18.07 16 8 O -0.56 -19.63 17.12 -4.36 -0.07 -19.70 16 9 N -0.61 -15.40 3.33 -816.47 -2.72 -18.11 16 10 C 0.11 2.14 5.54 86.73 0.48 2.62 16 11 C -0.12 -2.33 5.35 31.78 0.17 -2.17 16 12 C 0.07 1.88 2.71 46.31 0.13 2.01 16 13 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 14 N -0.53 -17.29 4.53 -861.87 -3.90 -21.19 16 15 C 0.05 1.99 5.48 86.38 0.47 2.47 16 16 C 0.18 8.91 5.42 86.35 0.47 9.37 16 17 N -0.61 -31.48 3.04 -698.15 -2.12 -33.60 16 18 C -0.26 -14.76 9.63 84.03 0.81 -13.95 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.84 4.93 84.86 0.42 -2.42 16 21 N -0.93 -55.21 11.15 21.65 0.24 -54.97 16 22 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.15 6.21 6.69 86.35 0.58 6.79 16 27 C 0.05 1.84 5.48 86.39 0.47 2.32 16 28 C 0.12 3.22 5.32 86.86 0.46 3.68 16 29 O -0.16 -3.09 8.28 -5.01 -0.04 -3.13 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.08 1.43 7.69 -2.39 -0.02 1.41 16 38 H 0.08 1.47 7.78 -2.39 -0.02 1.45 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.10 1.72 7.93 -2.39 -0.02 1.70 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 2.80 6.87 -2.38 -0.02 2.79 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 3.19 6.11 -2.39 -0.01 3.18 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 48 H 0.09 2.63 6.79 -2.39 -0.02 2.62 16 49 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.07 2.01 7.74 -2.38 -0.02 1.99 16 Total: -1.00 -71.27 402.87 1.17 -70.10 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.91 Total: 11.81 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.85 Total: 21.76 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -8.50 Total: -127.87 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.12 Total: -22.83 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.27 1.17 -70.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052045711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds