Wall clock time and date at job start Wed Apr 1 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46648 * 2 1 4 4 C 1.36765 * 125.80249 * 269.99725 * 3 2 1 5 5 C 1.47260 * 126.94361 * 359.97438 * 4 3 2 6 6 O 1.21620 * 120.00206 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99905 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99883 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47085 * 180.02562 * 8 7 5 10 10 H 1.08992 * 110.63874 * 307.87772 * 9 8 7 11 11 C 1.55059 * 110.58197 * 184.99868 * 9 8 7 12 12 C 1.55030 * 102.12935 * 204.93083 * 11 9 8 13 13 C 1.53322 * 103.78366 * 20.86698 * 12 11 9 14 14 C 1.52652 * 115.56243 * 133.64213 * 13 12 11 15 15 N 1.47222 * 87.77949 * 90.04529 * 14 13 12 16 16 C 1.36932 * 135.96431 * 206.41651 * 15 14 13 17 17 H 1.08004 * 120.00066 * 6.79093 * 16 15 14 18 18 C 1.38808 * 119.99884 * 186.79269 * 16 15 14 19 19 N 1.31629 * 119.99858 * 172.34298 * 18 16 15 20 20 Si 1.86797 * 120.00274 * 352.34104 * 18 16 15 21 21 H 1.48502 * 109.47471 * 175.35206 * 20 18 16 22 22 H 1.48504 * 109.47042 * 55.35242 * 20 18 16 23 23 H 1.48501 * 109.47081 * 295.35483 * 20 18 16 24 24 C 1.47219 * 88.06699 * 26.66772 * 15 14 13 25 25 O 1.42842 * 108.32807 * 1.60437 * 13 12 11 26 26 C 1.46693 * 106.11305 * 180.25194 * 4 3 2 27 27 C 1.34485 * 106.33049 * 359.62775 * 26 4 3 28 28 N 1.34658 * 125.79729 * 90.02779 * 3 2 1 29 29 C 1.46503 * 124.84999 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.47141 * 299.99840 * 1 2 3 31 31 H 1.09002 * 109.47303 * 60.00006 * 1 2 3 32 32 H 1.09007 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46847 * 240.00399 * 2 1 3 34 34 H 1.08994 * 109.47299 * 120.00288 * 2 1 3 35 35 H 0.96994 * 119.99774 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.47350 * 60.00170 * 8 7 5 37 37 H 1.09006 * 109.47215 * 300.00587 * 8 7 5 38 38 H 1.09008 * 110.87007 * 86.77543 * 11 9 8 39 39 H 1.08996 * 110.87404 * 323.09572 * 11 9 8 40 40 H 1.08993 * 110.56812 * 262.29252 * 12 11 9 41 41 H 1.08997 * 110.68568 * 139.49791 * 12 11 9 42 42 H 1.09002 * 113.50148 * 335.31600 * 14 13 12 43 43 H 1.09005 * 113.56183 * 204.78256 * 14 13 12 44 44 H 0.96991 * 120.00047 * 4.89162 * 19 18 16 45 45 H 1.09004 * 113.49685 * 88.06070 * 24 15 14 46 46 H 1.08993 * 113.49991 * 218.60291 * 24 15 14 47 47 H 1.07994 * 126.83430 * 179.75423 * 26 4 3 48 48 H 1.07997 * 125.57086 * 180.09120 * 27 26 4 49 49 H 1.08999 * 109.47244 * 90.00230 * 29 28 3 50 50 H 1.09007 * 109.46817 * 209.99539 * 29 28 3 51 51 H 1.08995 * 109.47473 * 329.99556 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1540 1.7632 -2.5156 6 8 1.7587 0.6448 -2.7839 7 7 2.4583 2.6259 -3.5053 8 6 2.3146 2.2158 -4.9044 9 6 2.7230 3.3722 -5.8193 10 1 2.1906 4.2836 -5.5476 11 6 2.4623 3.0105 -7.3044 12 6 3.4754 3.9214 -8.0442 13 6 4.5145 4.2606 -6.9691 14 6 5.9735 4.1277 -7.3979 15 7 5.9176 5.5364 -7.8219 16 6 6.5697 6.3145 -8.7408 17 1 7.2590 5.8628 -9.4389 18 6 6.3449 7.6839 -8.7750 19 7 7.0789 8.4521 -9.5520 20 14 5.0007 8.4364 -7.7185 21 1 5.0377 9.9152 -7.8495 22 1 5.2180 8.0597 -6.2986 23 1 3.6779 7.9326 -8.1674 24 6 4.8580 5.7437 -6.8211 25 8 4.1525 3.5830 -5.7648 26 6 2.7651 3.4753 -0.6150 27 6 2.7338 3.4028 0.7275 28 7 2.2953 2.1633 1.0922 29 6 2.1336 1.7056 2.4745 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.7732 3.5180 -3.2913 36 1 1.2764 1.9470 -5.0994 37 1 2.9553 1.3556 -5.0985 38 1 1.4392 3.2556 -7.5899 39 1 2.6773 1.9585 -7.4914 40 1 2.9857 4.8268 -8.4025 41 1 3.9414 3.3864 -8.8717 42 1 6.1223 3.4310 -8.2229 43 1 6.6573 3.9505 -6.5677 44 1 7.7282 8.0548 -10.1530 45 1 5.2381 6.0054 -5.8336 46 1 4.0653 6.4110 -7.1592 47 1 3.0703 4.3228 -1.2107 48 1 3.0147 4.1946 1.4062 49 1 3.0623 1.2492 2.8171 50 1 1.8894 2.5551 3.1123 51 1 1.3289 0.9720 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053660355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:19 Heat of formation + Delta-G solvation = 27.326465 kcal Electronic energy + Delta-G solvation = -30660.157348 eV Core-core repulsion = 26562.495533 eV Total energy + Delta-G solvation = -4097.661816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64648 -40.23228 -39.04275 -36.90196 -34.63758 -33.75649 -33.10977 -32.31193 -31.94030 -29.61115 -28.51777 -27.45651 -26.51467 -25.50528 -24.19007 -23.41140 -22.10875 -21.46386 -21.21529 -20.20227 -19.21484 -19.05909 -17.63373 -17.45803 -16.60701 -16.11336 -15.92263 -15.73101 -15.65310 -14.97600 -14.68906 -14.56811 -14.39024 -14.25625 -13.69638 -13.63846 -13.52904 -13.20066 -13.12361 -12.97804 -12.83075 -12.78840 -12.51953 -12.25158 -12.13836 -12.01218 -11.67857 -11.53056 -11.40435 -11.18741 -11.13534 -11.01749 -10.67591 -10.37293 -10.32451 -9.86319 -9.78002 -9.21867 -9.08673 -8.86848 -8.80322 -8.78252 -8.37999 -7.15645 -6.33260 -3.23721 1.59446 2.20897 2.48801 3.33918 3.39232 3.43939 3.54136 3.64297 3.89898 4.31795 4.35837 4.58493 4.62661 4.65586 4.66706 4.75808 4.79015 4.87243 4.92544 4.93617 5.04962 5.05666 5.07707 5.19174 5.23261 5.28510 5.42766 5.48549 5.54435 5.58595 5.64583 5.67418 5.76642 5.84915 5.95864 5.96354 6.04836 6.17998 6.24701 6.25288 6.33376 6.35111 6.40374 6.48324 6.56004 6.59452 6.81001 6.95844 7.07532 7.35591 7.62741 8.22664 8.35656 8.96724 9.48774 10.34882 11.19765 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002269 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.147063 B =12336.825850 C =13352.950073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C 0.108 3.892 4 C -0.234 4.234 5 C 0.592 3.408 6 O -0.556 6.556 7 N -0.721 5.721 8 C 0.132 3.868 9 C 0.061 3.939 10 H 0.076 0.924 11 C -0.145 4.145 12 C -0.114 4.114 13 C 0.060 3.940 14 C 0.133 3.867 15 N -0.621 5.621 16 C -0.301 4.301 17 H 0.084 0.916 18 C -0.025 4.025 19 N -0.933 5.933 20 Si 1.071 2.929 21 H -0.295 1.295 22 H -0.286 1.286 23 H -0.294 1.294 24 C 0.090 3.910 25 O -0.354 6.354 26 C -0.165 4.165 27 C -0.019 4.019 28 N -0.446 5.446 29 C 0.067 3.933 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.261 0.739 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.147 0.853 48 H 0.167 0.833 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -15.507 23.071 31.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.009 4.009 4 C -0.244 4.244 5 C 0.381 3.619 6 O -0.436 6.436 7 N -0.372 5.372 8 C 0.008 3.992 9 C 0.003 3.997 10 H 0.093 0.907 11 C -0.184 4.184 12 C -0.151 4.151 13 C 0.019 3.981 14 C 0.007 3.993 15 N -0.351 5.351 16 C -0.427 4.427 17 H 0.102 0.898 18 C -0.224 4.224 19 N -0.576 5.576 20 Si 0.903 3.097 21 H -0.222 1.222 22 H -0.213 1.213 23 H -0.222 1.222 24 C -0.036 4.036 25 O -0.272 6.272 26 C -0.189 4.189 27 C -0.145 4.145 28 N -0.122 5.122 29 C -0.075 4.075 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.165 0.835 48 H 0.184 0.816 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.955 -14.850 23.641 32.156 hybrid contribution 0.999 -0.671 -0.378 1.261 sum -14.956 -15.521 23.264 31.714 Atomic orbital electron populations 1.21647 0.94166 1.01953 1.01939 1.20322 0.96543 0.89285 1.04103 1.20295 1.00991 0.94475 0.85148 1.20099 1.16195 0.96198 0.91931 1.17307 0.76424 0.84077 0.84045 1.90712 1.47973 1.20430 1.84499 1.45706 1.68332 1.17472 1.05658 1.21372 1.01475 0.96808 0.79510 1.23383 0.84012 0.97249 0.95049 0.90659 1.23144 1.00249 1.01018 0.93949 1.22383 0.95081 0.99990 0.97668 1.23677 0.96445 0.93758 0.84186 1.22364 0.91791 0.88358 0.96820 1.45712 1.43319 1.06834 1.39222 1.20088 1.22517 0.90160 1.09915 0.89820 1.25741 1.02352 0.91658 1.02617 1.70924 1.24260 1.35774 1.26607 0.83693 0.74968 0.75325 0.75686 1.22223 1.21250 1.22246 1.23194 0.92110 0.94113 0.94168 1.88787 1.20688 1.77883 1.39862 1.22073 1.05927 0.97246 0.93629 1.21698 1.08247 0.88237 0.96306 1.43535 1.50942 1.11627 1.06061 1.22097 1.03322 1.01895 0.80147 0.93554 0.91776 0.92005 0.87513 0.91664 0.76126 0.90293 0.90594 0.90100 0.90208 0.90194 0.89969 0.93206 0.93653 0.92896 0.93089 0.93101 0.83538 0.81581 0.90682 0.89545 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.89 37.16 0.37 -0.75 16 2 C -0.06 -0.58 5.31 -27.88 -0.15 -0.73 16 3 C 0.11 1.12 6.14 -81.88 -0.50 0.61 16 4 C -0.23 -2.82 6.29 -103.35 -0.65 -3.47 16 5 C 0.59 8.08 7.81 -12.59 -0.10 7.98 16 6 O -0.56 -8.76 14.81 5.26 0.08 -8.69 16 7 N -0.72 -8.86 5.55 -61.43 -0.34 -9.20 16 8 C 0.13 1.59 5.41 -4.04 -0.02 1.57 16 9 C 0.06 0.78 3.38 -25.64 -0.09 0.69 16 10 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.15 -1.73 6.60 -24.57 -0.16 -1.90 16 12 C -0.11 -1.77 6.46 -25.49 -0.16 -1.93 16 13 C 0.06 1.10 1.66 -90.66 -0.15 0.94 16 14 C 0.13 2.77 8.20 -8.03 -0.07 2.70 16 15 N -0.62 -15.52 3.66 -184.61 -0.68 -16.20 16 16 C -0.30 -8.73 11.08 -15.06 -0.17 -8.89 16 17 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 18 C -0.03 -0.75 5.50 -17.43 -0.10 -0.84 16 19 N -0.93 -29.56 13.70 55.49 0.76 -28.80 16 20 Si 1.07 26.93 25.13 -169.99 -4.27 22.65 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 22 H -0.29 -6.75 6.11 56.52 0.35 -6.41 16 23 H -0.29 -6.92 6.63 56.52 0.37 -6.54 16 24 C 0.09 1.96 5.22 -7.88 -0.04 1.92 16 25 O -0.35 -5.79 11.02 -35.23 -0.39 -6.18 16 26 C -0.16 -1.67 10.56 -37.50 -0.40 -2.07 16 27 C -0.02 -0.16 11.34 -16.83 -0.19 -0.35 16 28 N -0.45 -3.62 3.09 -119.88 -0.37 -3.99 16 29 C 0.07 0.27 10.61 59.85 0.63 0.90 16 30 H 0.05 0.31 8.13 -51.93 -0.42 -0.11 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 1.19 6.47 -51.93 -0.34 0.85 16 34 H 0.06 0.43 7.58 -51.93 -0.39 0.04 16 35 H 0.40 4.52 7.60 -40.82 -0.31 4.21 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.08 1.30 7.82 -51.93 -0.41 0.90 16 41 H 0.08 1.28 7.81 -51.93 -0.41 0.87 16 42 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 45 H 0.05 1.13 7.69 -51.93 -0.40 0.73 16 46 H 0.05 1.12 4.50 -51.93 -0.23 0.89 16 47 H 0.15 1.28 7.69 -52.49 -0.40 0.88 16 48 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.20 8.13 -51.92 -0.42 -0.22 16 51 H 0.08 0.27 7.47 -51.93 -0.39 -0.12 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -35.76 405.11 -9.45 -45.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.41 Total: 2.70 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.94 Total: -3.61 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.63 Total: -58.19 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.31 Total: -14.87 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.27 Total: 22.65 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.76 -9.45 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053660355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.539 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds