Wall clock time and date at job start Wed Apr 1 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46648 * 2 1 4 4 C 1.36765 * 125.80249 * 269.99725 * 3 2 1 5 5 C 1.47260 * 126.94361 * 359.97438 * 4 3 2 6 6 O 1.21620 * 120.00206 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99905 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99883 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47085 * 180.02562 * 8 7 5 10 10 H 1.08992 * 110.63874 * 307.87772 * 9 8 7 11 11 C 1.55059 * 110.58197 * 184.99868 * 9 8 7 12 12 C 1.55030 * 102.12935 * 204.93083 * 11 9 8 13 13 C 1.53322 * 103.78366 * 20.86698 * 12 11 9 14 14 C 1.52652 * 115.56243 * 133.64213 * 13 12 11 15 15 N 1.47222 * 87.77949 * 90.04529 * 14 13 12 16 16 C 1.36932 * 135.96431 * 206.41651 * 15 14 13 17 17 H 1.08004 * 120.00066 * 6.79093 * 16 15 14 18 18 C 1.38808 * 119.99884 * 186.79269 * 16 15 14 19 19 N 1.31629 * 119.99858 * 172.34298 * 18 16 15 20 20 Si 1.86797 * 120.00274 * 352.34104 * 18 16 15 21 21 H 1.48502 * 109.47471 * 175.35206 * 20 18 16 22 22 H 1.48504 * 109.47042 * 55.35242 * 20 18 16 23 23 H 1.48501 * 109.47081 * 295.35483 * 20 18 16 24 24 C 1.47219 * 88.06699 * 26.66772 * 15 14 13 25 25 O 1.42842 * 108.32807 * 1.60437 * 13 12 11 26 26 C 1.46693 * 106.11305 * 180.25194 * 4 3 2 27 27 C 1.34485 * 106.33049 * 359.62775 * 26 4 3 28 28 N 1.34658 * 125.79729 * 90.02779 * 3 2 1 29 29 C 1.46503 * 124.84999 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.47141 * 299.99840 * 1 2 3 31 31 H 1.09002 * 109.47303 * 60.00006 * 1 2 3 32 32 H 1.09007 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46847 * 240.00399 * 2 1 3 34 34 H 1.08994 * 109.47299 * 120.00288 * 2 1 3 35 35 H 0.96994 * 119.99774 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.47350 * 60.00170 * 8 7 5 37 37 H 1.09006 * 109.47215 * 300.00587 * 8 7 5 38 38 H 1.09008 * 110.87007 * 86.77543 * 11 9 8 39 39 H 1.08996 * 110.87404 * 323.09572 * 11 9 8 40 40 H 1.08993 * 110.56812 * 262.29252 * 12 11 9 41 41 H 1.08997 * 110.68568 * 139.49791 * 12 11 9 42 42 H 1.09002 * 113.50148 * 335.31600 * 14 13 12 43 43 H 1.09005 * 113.56183 * 204.78256 * 14 13 12 44 44 H 0.96991 * 120.00047 * 4.89162 * 19 18 16 45 45 H 1.09004 * 113.49685 * 88.06070 * 24 15 14 46 46 H 1.08993 * 113.49991 * 218.60291 * 24 15 14 47 47 H 1.07994 * 126.83430 * 179.75423 * 26 4 3 48 48 H 1.07997 * 125.57086 * 180.09120 * 27 26 4 49 49 H 1.08999 * 109.47244 * 90.00230 * 29 28 3 50 50 H 1.09007 * 109.46817 * 209.99539 * 29 28 3 51 51 H 1.08995 * 109.47473 * 329.99556 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1540 1.7632 -2.5156 6 8 1.7587 0.6448 -2.7839 7 7 2.4583 2.6259 -3.5053 8 6 2.3146 2.2158 -4.9044 9 6 2.7230 3.3722 -5.8193 10 1 2.1906 4.2836 -5.5476 11 6 2.4623 3.0105 -7.3044 12 6 3.4754 3.9214 -8.0442 13 6 4.5145 4.2606 -6.9691 14 6 5.9735 4.1277 -7.3979 15 7 5.9176 5.5364 -7.8219 16 6 6.5697 6.3145 -8.7408 17 1 7.2590 5.8628 -9.4389 18 6 6.3449 7.6839 -8.7750 19 7 7.0789 8.4521 -9.5520 20 14 5.0007 8.4364 -7.7185 21 1 5.0377 9.9152 -7.8495 22 1 5.2180 8.0597 -6.2986 23 1 3.6779 7.9326 -8.1674 24 6 4.8580 5.7437 -6.8211 25 8 4.1525 3.5830 -5.7648 26 6 2.7651 3.4753 -0.6150 27 6 2.7338 3.4028 0.7275 28 7 2.2953 2.1633 1.0922 29 6 2.1336 1.7056 2.4745 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.7732 3.5180 -3.2913 36 1 1.2764 1.9470 -5.0994 37 1 2.9553 1.3556 -5.0985 38 1 1.4392 3.2556 -7.5899 39 1 2.6773 1.9585 -7.4914 40 1 2.9857 4.8268 -8.4025 41 1 3.9414 3.3864 -8.8717 42 1 6.1223 3.4310 -8.2229 43 1 6.6573 3.9505 -6.5677 44 1 7.7282 8.0548 -10.1530 45 1 5.2381 6.0054 -5.8336 46 1 4.0653 6.4110 -7.1592 47 1 3.0703 4.3228 -1.2107 48 1 3.0147 4.1946 1.4062 49 1 3.0623 1.2492 2.8171 50 1 1.8894 2.5551 3.1123 51 1 1.3289 0.9720 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053660355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:18 Heat of formation + Delta-G solvation = 2.505978 kcal Electronic energy + Delta-G solvation = -30661.233645 eV Core-core repulsion = 26562.495533 eV Total energy + Delta-G solvation = -4098.738113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31879 -41.63015 -40.07406 -38.37763 -35.69741 -34.57525 -34.39752 -33.70203 -33.07919 -30.92789 -29.35424 -28.80944 -27.33673 -27.22278 -25.22232 -24.29385 -23.25334 -22.80727 -22.34611 -21.01418 -20.75485 -19.92579 -19.51591 -18.36052 -17.76060 -17.47756 -16.88521 -16.76180 -16.45015 -16.27135 -16.11632 -15.63441 -15.44244 -15.16545 -15.09491 -14.90300 -14.61428 -14.36896 -14.21136 -14.00297 -13.66377 -13.56113 -13.41562 -13.28082 -13.18819 -13.08844 -12.74459 -12.71516 -12.64997 -12.40542 -12.32595 -12.15395 -12.02068 -11.86132 -11.72753 -11.43126 -11.32785 -11.03043 -10.81371 -10.32848 -10.07293 -9.48492 -9.24747 -9.09735 -8.68675 -5.50860 0.77868 1.37066 1.47380 1.53391 1.66942 1.91003 2.43137 2.52247 2.60483 2.63752 2.97048 3.23693 3.41733 3.61009 3.64679 3.72800 3.93933 3.98042 4.01620 4.12547 4.13961 4.32891 4.39144 4.41334 4.43985 4.47090 4.50674 4.59754 4.61478 4.62659 4.67509 4.68741 4.71883 4.83099 4.83695 4.91717 4.95177 4.99088 5.02742 5.08700 5.10864 5.13118 5.24588 5.30972 5.32670 5.54152 5.82886 5.91092 6.02910 6.12857 6.38176 6.66123 6.69112 7.27839 7.38351 8.21980 8.87211 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002269 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.147063 B =12336.825850 C =13352.950073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C 0.100 3.900 4 C -0.270 4.270 5 C 0.586 3.414 6 O -0.587 6.587 7 N -0.719 5.719 8 C 0.138 3.862 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.085 3.915 14 C 0.126 3.874 15 N -0.648 5.648 16 C -0.289 4.289 17 H 0.053 0.947 18 C -0.083 4.083 19 N -0.967 5.967 20 Si 1.107 2.893 21 H -0.303 1.303 22 H -0.264 1.264 23 H -0.266 1.266 24 C 0.083 3.917 25 O -0.363 6.363 26 C -0.187 4.187 27 C -0.011 4.011 28 N -0.442 5.442 29 C 0.058 3.942 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.409 0.591 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.247 0.753 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.153 0.847 48 H 0.199 0.801 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 -16.323 26.115 35.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.018 4.018 4 C -0.280 4.280 5 C 0.376 3.624 6 O -0.469 6.469 7 N -0.369 5.369 8 C 0.014 3.986 9 C 0.003 3.997 10 H 0.108 0.892 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.044 3.956 14 C 0.000 4.000 15 N -0.379 5.379 16 C -0.417 4.417 17 H 0.071 0.929 18 C -0.275 4.275 19 N -0.612 5.612 20 Si 0.933 3.067 21 H -0.231 1.231 22 H -0.189 1.189 23 H -0.193 1.193 24 C -0.042 4.042 25 O -0.282 6.282 26 C -0.210 4.210 27 C -0.138 4.138 28 N -0.116 5.116 29 C -0.082 4.082 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.245 0.755 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.170 0.830 48 H 0.216 0.784 49 H 0.105 0.895 50 H 0.127 0.873 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.470 -15.712 26.721 36.083 hybrid contribution 1.848 -0.543 -1.239 2.290 sum -16.622 -16.255 25.482 34.494 Atomic orbital electron populations 1.21588 0.93489 1.02600 1.01367 1.20289 0.97057 0.88729 1.03959 1.20492 1.00691 0.94996 0.85656 1.20223 1.18458 0.97809 0.91557 1.17658 0.75918 0.83759 0.85025 1.90683 1.49558 1.21622 1.85075 1.45708 1.68006 1.17560 1.05641 1.21327 1.01946 0.95991 0.79327 1.23595 0.81964 0.98129 0.95964 0.89200 1.23143 1.00781 1.00874 0.92230 1.22412 0.95205 1.00675 0.97125 1.23195 0.95461 0.91290 0.85671 1.22535 0.94109 0.86323 0.97013 1.45732 1.44191 1.08505 1.39424 1.19944 1.21277 0.90705 1.09732 0.92921 1.27092 1.04109 0.92646 1.03659 1.71029 1.25667 1.36341 1.28213 0.83288 0.73781 0.74141 0.75524 1.23095 1.18914 1.19255 1.23361 0.91101 0.96855 0.92923 1.88779 1.23244 1.77301 1.38840 1.22261 1.07078 0.96935 0.94769 1.22208 1.06520 0.88821 0.96210 1.43822 1.49525 1.11233 1.07070 1.22439 1.04444 1.03280 0.78073 0.91927 0.94405 0.90773 0.90235 0.89134 0.75546 0.88849 0.91944 0.87152 0.89059 0.90592 0.90120 0.92476 0.93665 0.94399 0.93197 0.92719 0.82957 0.78446 0.89528 0.87324 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.06 -1.06 5.31 29.85 0.16 -0.90 16 3 C 0.10 1.97 6.14 41.78 0.26 2.22 16 4 C -0.27 -6.40 6.29 -19.04 -0.12 -6.52 16 5 C 0.59 15.99 7.81 86.61 0.68 16.67 16 6 O -0.59 -18.84 14.81 -4.10 -0.06 -18.90 16 7 N -0.72 -17.03 5.55 -466.52 -2.59 -19.62 16 8 C 0.14 3.07 5.41 86.38 0.47 3.54 16 9 C 0.06 1.38 3.38 31.30 0.11 1.48 16 10 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 11 C -0.13 -2.69 6.60 31.99 0.21 -2.48 16 12 C -0.12 -3.33 6.46 31.40 0.20 -3.13 16 13 C 0.08 2.94 1.66 -10.82 -0.02 2.92 16 14 C 0.13 5.15 8.20 83.40 0.68 5.83 16 15 N -0.65 -32.27 3.66 -739.09 -2.70 -34.97 16 16 C -0.29 -17.15 11.08 84.03 0.93 -16.22 16 17 H 0.05 3.36 8.05 -2.91 -0.02 3.33 16 18 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 19 N -0.97 -63.14 13.70 21.65 0.30 -62.84 16 20 Si 1.11 53.77 25.13 68.60 1.72 55.49 16 21 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 22 H -0.26 -11.74 6.11 99.48 0.61 -11.13 16 23 H -0.27 -11.61 6.63 99.48 0.66 -10.95 16 24 C 0.08 3.45 5.22 83.50 0.44 3.88 16 25 O -0.36 -11.11 11.02 -148.98 -1.64 -12.75 16 26 C -0.19 -3.56 10.56 23.62 0.25 -3.31 16 27 C -0.01 -0.16 11.34 83.12 0.94 0.78 16 28 N -0.44 -6.07 3.09 -533.19 -1.65 -7.71 16 29 C 0.06 0.26 10.61 127.77 1.36 1.62 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 1.81 6.47 -2.38 -0.02 1.80 16 34 H 0.09 1.02 7.58 -2.39 -0.02 1.00 16 35 H 0.41 8.71 7.60 -92.71 -0.70 8.01 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 40 H 0.08 2.26 7.82 -2.39 -0.02 2.25 16 41 H 0.08 2.35 7.81 -2.39 -0.02 2.33 16 42 H 0.06 2.23 7.91 -2.39 -0.02 2.21 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.25 16.17 8.73 -92.72 -0.81 15.36 16 45 H 0.05 2.11 7.69 -2.38 -0.02 2.09 16 46 H 0.06 2.25 4.50 -2.39 -0.01 2.24 16 47 H 0.15 2.51 7.69 -2.91 -0.02 2.49 16 48 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 49 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.11 0.05 8.13 -2.38 -0.02 0.03 16 51 H 0.10 0.26 7.47 -2.39 -0.02 0.24 16 Total: -1.00 -80.68 405.11 1.14 -79.54 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.04 Total: 21.22 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 7.72 Total: 0.55 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -6.64 Total: -125.15 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.70 Total: -31.65 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.72 Total: 55.49 kcal Total: -80.68 1.14 -79.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053660355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.042 kcal (2) G-P(sol) polarization free energy of solvation -80.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds