Wall clock time and date at job start Wed Apr 1 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46872 * 2 1 4 4 N 1.29929 * 125.38222 * 90.00017 * 3 2 1 5 5 C 1.36070 * 108.48254 * 180.02562 * 4 3 2 6 6 C 1.47411 * 126.45255 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99985 * 186.60868 * 6 5 4 8 8 N 1.34779 * 119.99901 * 6.60527 * 6 5 4 9 9 C 1.46935 * 120.71807 * 6.46578 * 8 6 5 10 10 C 1.53184 * 108.94398 * 125.76882 * 9 8 6 11 11 C 1.53199 * 109.27461 * 55.30994 * 10 9 8 12 12 C 1.52063 * 109.67922 * 300.04499 * 11 10 9 13 13 C 1.54352 * 110.60552 * 295.83309 * 12 11 10 14 14 C 1.54465 * 102.86277 * 207.23352 * 13 12 11 15 15 N 1.47087 * 107.29705 * 21.47498 * 14 13 12 16 16 C 1.36937 * 125.62523 * 180.71801 * 15 14 13 17 17 H 1.08003 * 120.00090 * 174.96894 * 16 15 14 18 18 C 1.38817 * 120.00386 * 354.96004 * 16 15 14 19 19 N 1.31626 * 119.99522 * 354.89799 * 18 16 15 20 20 Si 1.86793 * 120.00352 * 174.89667 * 18 16 15 21 21 H 1.48502 * 109.47137 * 95.00160 * 20 18 16 22 22 H 1.48502 * 109.47215 * 215.00075 * 20 18 16 23 23 H 1.48495 * 109.47182 * 335.00090 * 20 18 16 24 24 C 1.47581 * 108.74900 * 0.97764 * 15 14 13 25 25 C 1.47119 * 120.71518 * 186.48669 * 8 6 5 26 26 C 1.36089 * 107.09871 * 0.22506 * 5 4 3 27 27 C 1.50702 * 126.52698 * 179.77558 * 26 5 4 28 28 O 1.34051 * 125.37418 * 270.03732 * 3 2 1 29 29 H 1.08996 * 109.47212 * 299.99832 * 1 2 3 30 30 H 1.08992 * 109.47099 * 60.00819 * 1 2 3 31 31 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47402 * 239.99406 * 2 1 3 33 33 H 1.09005 * 109.47032 * 119.99471 * 2 1 3 34 34 H 1.09000 * 109.55465 * 245.60947 * 9 8 6 35 35 H 1.08997 * 109.55556 * 5.93107 * 9 8 6 36 36 H 1.08993 * 109.50451 * 175.24859 * 10 9 8 37 37 H 1.09000 * 109.50559 * 295.37271 * 10 9 8 38 38 H 1.09004 * 109.43643 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.43420 * 60.11209 * 11 10 9 40 40 H 1.08998 * 110.73885 * 88.89087 * 13 12 11 41 41 H 1.08999 * 110.73756 * 325.57497 * 13 12 11 42 42 H 1.08996 * 109.87908 * 262.05436 * 14 13 12 43 43 H 1.08995 * 110.00349 * 140.96572 * 14 13 12 44 44 H 0.96996 * 119.99781 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.37326 * 95.54756 * 24 15 14 46 46 H 1.08997 * 110.37857 * 217.89978 * 24 15 14 47 47 H 1.09002 * 109.57590 * 112.42740 * 25 8 6 48 48 H 1.08996 * 109.57252 * 352.04115 * 25 8 6 49 49 H 1.08996 * 109.47077 * 89.99925 * 27 26 5 50 50 H 1.09003 * 109.46864 * 210.00266 * 27 26 5 51 51 H 1.08999 * 109.47000 * 329.99896 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1301 1.0593 5 6 2.7164 3.3578 0.6638 6 6 3.1099 4.4731 1.5437 7 8 3.3659 5.5623 1.0672 8 7 3.1859 4.2857 2.8762 9 6 3.0187 2.9462 3.4565 10 6 4.2324 2.6303 4.3362 11 6 4.4001 3.7366 5.3826 12 6 4.6113 5.0720 4.6867 13 6 5.9297 5.0638 3.8841 14 6 6.3302 6.5555 3.8652 15 7 5.6408 7.2076 4.9890 16 6 5.7207 8.5362 5.3111 17 1 5.1117 8.9362 6.1083 18 6 6.5846 9.3689 4.6130 19 7 7.3992 8.8643 3.7107 20 14 6.5910 11.2054 4.9543 21 1 7.6529 11.5215 5.9430 22 1 6.8545 11.9425 3.6923 23 1 5.2707 11.6123 5.4987 24 6 4.8536 6.1927 5.7160 25 6 3.4376 5.4180 3.7811 26 6 2.7128 3.3641 -0.6971 27 6 3.1105 4.5112 -1.5898 28 8 2.2903 2.1527 -1.0930 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.1127 2.9214 4.0620 35 1 2.9456 2.2088 2.6571 36 1 4.0793 1.6750 4.8380 37 1 5.1273 2.5772 3.7162 38 1 5.2629 3.5142 6.0105 39 1 3.5050 3.7881 6.0025 40 1 5.7630 4.6962 2.8717 41 1 6.6873 4.4673 4.3925 42 1 6.0190 7.0109 2.9251 43 1 7.4091 6.6535 3.9853 44 1 8.0026 9.4462 3.2226 45 1 5.4191 5.8114 6.5662 46 1 3.9051 6.6145 6.0483 47 1 2.5513 5.6051 4.3874 48 1 3.6768 6.3064 3.1966 49 1 4.1763 4.4484 -1.8092 50 1 2.5445 4.4609 -2.5200 51 1 2.8983 5.4542 -1.0860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054212852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:37 Heat of formation + Delta-G solvation = 16.406857 kcal Electronic energy + Delta-G solvation = -32304.432318 eV Core-core repulsion = 28206.296992 eV Total energy + Delta-G solvation = -4098.135325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65818 -40.16333 -38.19415 -35.88816 -35.20527 -34.37202 -32.91897 -31.90192 -31.68157 -29.83033 -28.57333 -27.59758 -25.83032 -25.47839 -24.22222 -23.64066 -22.77355 -21.71917 -21.48835 -20.08313 -19.44210 -18.14340 -17.34930 -17.11881 -16.61874 -16.16630 -15.65879 -15.12117 -15.01073 -14.73756 -14.71525 -14.31810 -13.99392 -13.71619 -13.57315 -13.52564 -13.27510 -13.07718 -12.94973 -12.83061 -12.57240 -12.32106 -12.18248 -12.09080 -11.82786 -11.65672 -11.61357 -11.50378 -11.25359 -10.97484 -10.77334 -10.74626 -10.49684 -10.20042 -10.04000 -9.95810 -9.81939 -9.60737 -9.55693 -9.36236 -8.94838 -8.49146 -8.28392 -6.69845 -5.59082 -2.93676 0.98640 1.84398 2.25838 3.11094 3.37228 3.46874 3.51899 3.54344 3.63590 4.40583 4.50861 4.58925 4.67831 4.68001 4.86828 5.02121 5.06426 5.16151 5.21226 5.26901 5.32222 5.34558 5.36747 5.46889 5.49860 5.57836 5.63542 5.67621 5.70142 5.72989 5.83175 5.95360 6.02051 6.05808 6.09773 6.15370 6.22659 6.34792 6.41024 6.47701 6.55032 6.65420 6.69708 6.87288 6.91229 6.99786 7.29229 7.67061 7.67622 7.80255 7.96028 8.34282 8.38370 9.32842 9.93900 10.61003 11.51412 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.002975 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.241866 B = 9409.694147 C =10511.357957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.189 3.811 4 N -0.452 5.452 5 C -0.067 4.067 6 C 0.596 3.404 7 O -0.527 6.527 8 N -0.589 5.589 9 C 0.080 3.920 10 C -0.131 4.131 11 C -0.102 4.102 12 C -0.085 4.085 13 C -0.126 4.126 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.226 4.226 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.148 3.852 25 C 0.134 3.866 26 C 0.040 3.960 27 C -0.079 4.079 28 O -0.197 6.197 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.250 0.750 45 H 0.021 0.979 46 H 0.037 0.963 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.079 0.921 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 -21.527 -8.094 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.019 4.019 4 N -0.182 5.182 5 C -0.186 4.186 6 C 0.383 3.617 7 O -0.404 6.404 8 N -0.320 5.320 9 C -0.043 4.043 10 C -0.169 4.169 11 C -0.140 4.140 12 C -0.087 4.087 13 C -0.165 4.165 14 C 0.052 3.948 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.021 3.979 25 C 0.013 3.987 26 C -0.016 4.016 27 C -0.135 4.135 28 O -0.084 6.084 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.122 0.878 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.690 -20.946 -7.825 25.709 hybrid contribution 0.214 1.107 -0.332 1.176 sum -12.476 -19.838 -8.157 24.814 Atomic orbital electron populations 1.21793 0.92978 1.03031 1.03108 1.20104 0.96921 0.83983 1.05363 1.26370 0.99974 0.96971 0.78613 1.70531 1.16219 1.02876 1.28571 1.21576 1.10484 0.94255 0.92312 1.16753 0.77743 0.85571 0.81642 1.90829 1.50140 1.24980 1.74431 1.47907 1.69211 1.09836 1.05021 1.22577 0.97099 0.84828 0.99800 1.21922 0.98796 0.98341 0.97877 1.21344 1.01575 0.93929 0.97192 1.21381 0.95541 0.95202 0.96543 1.22755 0.95047 1.00251 0.98409 1.21182 0.97036 0.85744 0.90832 1.44527 1.54006 1.04067 1.30376 1.19033 1.18744 0.82573 1.15129 0.90598 1.24799 0.98325 0.98117 0.99241 1.69982 1.25461 1.33214 1.27962 0.86134 0.77486 0.85342 0.77007 1.21803 1.21738 1.20708 1.21414 0.94851 0.88811 0.92782 1.21482 0.96468 0.89251 0.91521 1.23759 0.97873 0.85417 0.94563 1.20654 1.02633 0.92585 0.97652 1.84313 1.64036 1.22248 1.37840 0.91596 0.92161 0.90810 0.88819 0.87391 0.92290 0.84981 0.91346 0.91717 0.91742 0.92260 0.92681 0.92741 0.94757 0.92971 0.93910 0.96114 0.94439 0.92035 0.87759 0.88914 0.90252 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.14 6.56 -27.88 -0.18 -0.33 16 3 C 0.19 1.93 7.56 -13.08 -0.10 1.83 16 4 N -0.45 -5.69 7.81 -7.66 -0.06 -5.75 16 5 C -0.07 -0.98 6.68 -83.02 -0.55 -1.54 16 6 C 0.60 10.45 7.68 -12.52 -0.10 10.35 16 7 O -0.53 -10.74 14.22 5.27 0.07 -10.67 16 8 N -0.59 -9.70 2.58 -174.46 -0.45 -10.15 16 9 C 0.08 1.06 6.11 -3.71 -0.02 1.04 16 10 C -0.13 -1.67 5.92 -26.53 -0.16 -1.83 16 11 C -0.10 -1.47 4.65 -27.11 -0.13 -1.59 16 12 C -0.08 -1.54 0.55 -154.11 -0.09 -1.63 16 13 C -0.13 -2.57 4.88 -25.25 -0.12 -2.70 16 14 C 0.18 4.57 4.99 -2.95 -0.01 4.55 16 15 N -0.60 -15.96 3.39 -170.33 -0.58 -16.53 16 16 C -0.23 -6.52 10.27 -15.06 -0.15 -6.68 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.25 5.46 -17.43 -0.10 -0.35 16 19 N -0.92 -28.15 10.40 55.49 0.58 -27.58 16 20 Si 0.91 22.94 29.56 -169.99 -5.02 17.91 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.15 3.15 6.15 -2.89 -0.02 3.13 16 25 C 0.13 2.47 5.09 -4.10 -0.02 2.45 16 26 C 0.04 0.51 7.44 -35.08 -0.26 0.25 16 27 C -0.08 -0.85 9.95 36.01 0.36 -0.50 16 28 O -0.20 -2.24 10.73 6.48 0.07 -2.17 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.13 1.73 4.04 -62.81 -0.25 1.47 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.90 7.40 -51.93 -0.38 0.52 16 38 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 41 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 42 H 0.03 1.00 7.81 -51.93 -0.41 0.59 16 43 H 0.05 1.50 7.08 -51.93 -0.37 1.13 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 46 H 0.04 0.77 8.01 -51.93 -0.42 0.36 16 47 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 48 H 0.10 2.34 6.61 -51.93 -0.34 2.00 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.12 1.50 6.37 -51.93 -0.33 1.17 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -34.26 394.60 -9.07 -43.33 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.35 Total: -0.45 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.29 Total: 6.11 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.51 Total: -60.02 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.14 Total: -12.84 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.26 -9.07 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054212852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.740 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds