Wall clock time and date at job start Wed Apr 1 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46872 * 2 1 4 4 N 1.29929 * 125.38222 * 90.00017 * 3 2 1 5 5 C 1.36070 * 108.48254 * 180.02562 * 4 3 2 6 6 C 1.47411 * 126.45255 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99985 * 186.60868 * 6 5 4 8 8 N 1.34779 * 119.99901 * 6.60527 * 6 5 4 9 9 C 1.46935 * 120.71807 * 6.46578 * 8 6 5 10 10 C 1.53184 * 108.94398 * 125.76882 * 9 8 6 11 11 C 1.53199 * 109.27461 * 55.30994 * 10 9 8 12 12 C 1.52063 * 109.67922 * 300.04499 * 11 10 9 13 13 C 1.54352 * 110.60552 * 295.83309 * 12 11 10 14 14 C 1.54465 * 102.86277 * 207.23352 * 13 12 11 15 15 N 1.47087 * 107.29705 * 21.47498 * 14 13 12 16 16 C 1.36937 * 125.62523 * 180.71801 * 15 14 13 17 17 H 1.08003 * 120.00090 * 174.96894 * 16 15 14 18 18 C 1.38817 * 120.00386 * 354.96004 * 16 15 14 19 19 N 1.31626 * 119.99522 * 354.89799 * 18 16 15 20 20 Si 1.86793 * 120.00352 * 174.89667 * 18 16 15 21 21 H 1.48502 * 109.47137 * 95.00160 * 20 18 16 22 22 H 1.48502 * 109.47215 * 215.00075 * 20 18 16 23 23 H 1.48495 * 109.47182 * 335.00090 * 20 18 16 24 24 C 1.47581 * 108.74900 * 0.97764 * 15 14 13 25 25 C 1.47119 * 120.71518 * 186.48669 * 8 6 5 26 26 C 1.36089 * 107.09871 * 0.22506 * 5 4 3 27 27 C 1.50702 * 126.52698 * 179.77558 * 26 5 4 28 28 O 1.34051 * 125.37418 * 270.03732 * 3 2 1 29 29 H 1.08996 * 109.47212 * 299.99832 * 1 2 3 30 30 H 1.08992 * 109.47099 * 60.00819 * 1 2 3 31 31 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47402 * 239.99406 * 2 1 3 33 33 H 1.09005 * 109.47032 * 119.99471 * 2 1 3 34 34 H 1.09000 * 109.55465 * 245.60947 * 9 8 6 35 35 H 1.08997 * 109.55556 * 5.93107 * 9 8 6 36 36 H 1.08993 * 109.50451 * 175.24859 * 10 9 8 37 37 H 1.09000 * 109.50559 * 295.37271 * 10 9 8 38 38 H 1.09004 * 109.43643 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.43420 * 60.11209 * 11 10 9 40 40 H 1.08998 * 110.73885 * 88.89087 * 13 12 11 41 41 H 1.08999 * 110.73756 * 325.57497 * 13 12 11 42 42 H 1.08996 * 109.87908 * 262.05436 * 14 13 12 43 43 H 1.08995 * 110.00349 * 140.96572 * 14 13 12 44 44 H 0.96996 * 119.99781 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.37326 * 95.54756 * 24 15 14 46 46 H 1.08997 * 110.37857 * 217.89978 * 24 15 14 47 47 H 1.09002 * 109.57590 * 112.42740 * 25 8 6 48 48 H 1.08996 * 109.57252 * 352.04115 * 25 8 6 49 49 H 1.08996 * 109.47077 * 89.99925 * 27 26 5 50 50 H 1.09003 * 109.46864 * 210.00266 * 27 26 5 51 51 H 1.08999 * 109.47000 * 329.99896 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1301 1.0593 5 6 2.7164 3.3578 0.6638 6 6 3.1099 4.4731 1.5437 7 8 3.3659 5.5623 1.0672 8 7 3.1859 4.2857 2.8762 9 6 3.0187 2.9462 3.4565 10 6 4.2324 2.6303 4.3362 11 6 4.4001 3.7366 5.3826 12 6 4.6113 5.0720 4.6867 13 6 5.9297 5.0638 3.8841 14 6 6.3302 6.5555 3.8652 15 7 5.6408 7.2076 4.9890 16 6 5.7207 8.5362 5.3111 17 1 5.1117 8.9362 6.1083 18 6 6.5846 9.3689 4.6130 19 7 7.3992 8.8643 3.7107 20 14 6.5910 11.2054 4.9543 21 1 7.6529 11.5215 5.9430 22 1 6.8545 11.9425 3.6923 23 1 5.2707 11.6123 5.4987 24 6 4.8536 6.1927 5.7160 25 6 3.4376 5.4180 3.7811 26 6 2.7128 3.3641 -0.6971 27 6 3.1105 4.5112 -1.5898 28 8 2.2903 2.1527 -1.0930 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.1127 2.9214 4.0620 35 1 2.9456 2.2088 2.6571 36 1 4.0793 1.6750 4.8380 37 1 5.1273 2.5772 3.7162 38 1 5.2629 3.5142 6.0105 39 1 3.5050 3.7881 6.0025 40 1 5.7630 4.6962 2.8717 41 1 6.6873 4.4673 4.3925 42 1 6.0190 7.0109 2.9251 43 1 7.4091 6.6535 3.9853 44 1 8.0026 9.4462 3.2226 45 1 5.4191 5.8114 6.5662 46 1 3.9051 6.6145 6.0483 47 1 2.5513 5.6051 4.3874 48 1 3.6768 6.3064 3.1966 49 1 4.1763 4.4484 -1.8092 50 1 2.5445 4.4609 -2.5200 51 1 2.8983 5.4542 -1.0860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054212852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:36 Heat of formation + Delta-G solvation = -5.809920 kcal Electronic energy + Delta-G solvation = -32305.395709 eV Core-core repulsion = 28206.296992 eV Total energy + Delta-G solvation = -4099.098717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58476 -41.56617 -39.71900 -37.39996 -36.18350 -35.11741 -34.65147 -33.29200 -32.58290 -31.60981 -30.42978 -28.65875 -27.38518 -26.75332 -25.45157 -25.05565 -23.71458 -23.03033 -22.42837 -22.02075 -20.60842 -19.65114 -18.65249 -18.46654 -18.06561 -17.26725 -16.92099 -16.76760 -16.52147 -15.88676 -15.67537 -15.64718 -15.37540 -15.12050 -14.85518 -14.59842 -14.36267 -14.22781 -14.07629 -14.03634 -13.84487 -13.58090 -13.46571 -13.37647 -13.26361 -12.98483 -12.76813 -12.60821 -12.58061 -12.31868 -12.20957 -12.05741 -12.00898 -11.96663 -11.85603 -11.59380 -11.48382 -11.32718 -11.11364 -10.73269 -10.62248 -9.96851 -9.55843 -8.88665 -7.83669 -5.20901 -0.02915 0.89277 1.38243 1.42316 1.45604 1.54473 1.88541 2.14339 2.48864 2.76710 3.33319 3.45293 3.55241 3.61335 3.69276 3.83705 3.95812 4.05637 4.16792 4.21590 4.25792 4.27934 4.34553 4.36211 4.45137 4.49890 4.54393 4.58754 4.70000 4.71983 4.81511 4.83643 4.87747 4.92859 4.98042 5.00702 5.02915 5.03779 5.09843 5.10108 5.21395 5.29122 5.37641 5.43754 5.45472 5.48240 5.64238 5.69669 5.75061 6.19259 6.26528 6.49405 7.03296 7.08709 7.77541 8.43430 9.26057 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.002975 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.241866 B = 9409.694147 C =10511.357957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C 0.203 3.797 4 N -0.466 5.466 5 C -0.093 4.093 6 C 0.587 3.413 7 O -0.572 6.572 8 N -0.588 5.588 9 C 0.077 3.923 10 C -0.124 4.124 11 C -0.096 4.096 12 C -0.070 4.070 13 C -0.108 4.108 14 C 0.191 3.809 15 N -0.623 5.623 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.072 4.072 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.267 1.267 24 C 0.143 3.857 25 C 0.140 3.860 26 C 0.041 3.959 27 C -0.078 4.078 28 O -0.194 6.194 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.072 0.928 42 H -0.016 1.016 43 H 0.014 0.986 44 H 0.244 0.756 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.712 -24.899 -7.122 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 C -0.005 4.005 4 N -0.195 5.195 5 C -0.211 4.211 6 C 0.376 3.624 7 O -0.452 6.452 8 N -0.318 5.318 9 C -0.044 4.044 10 C -0.162 4.162 11 C -0.134 4.134 12 C -0.072 4.072 13 C -0.146 4.146 14 C 0.066 3.934 15 N -0.350 5.350 16 C -0.368 4.368 17 H 0.103 0.897 18 C -0.265 4.265 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.210 1.210 22 H -0.224 1.224 23 H -0.191 1.191 24 C 0.018 3.982 25 C 0.018 3.982 26 C -0.015 4.015 27 C -0.134 4.134 28 O -0.081 6.081 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.002 0.998 43 H 0.033 0.967 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.117 0.883 50 H 0.128 0.872 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.571 -24.367 -6.794 29.193 hybrid contribution 0.721 2.083 -0.670 2.304 sum -13.851 -22.284 -7.464 27.279 Atomic orbital electron populations 1.21789 0.92267 1.04398 1.02156 1.20479 0.97285 0.81102 1.07422 1.27453 0.97478 0.97956 0.77654 1.70437 1.17475 1.02139 1.29483 1.21243 1.12670 0.94627 0.92586 1.17211 0.77140 0.85854 0.82227 1.90805 1.52148 1.26975 1.75294 1.48004 1.68645 1.10558 1.04623 1.22836 0.98250 0.82957 1.00359 1.21913 0.97701 0.99416 0.97154 1.21339 1.03152 0.91379 0.97551 1.21310 0.93776 0.96760 0.95314 1.22536 0.97005 0.96111 0.98984 1.20814 0.94691 0.89093 0.88792 1.44807 1.54655 1.04549 1.30952 1.19490 1.18297 0.84076 1.14942 0.89687 1.25726 0.98426 1.02849 0.99457 1.70232 1.26346 1.34439 1.29196 0.85047 0.78110 0.79612 0.76505 1.21003 1.22429 1.19121 1.21663 0.94496 0.88608 0.93464 1.21213 0.97206 0.88490 0.91297 1.23969 0.97060 0.86222 0.94277 1.20650 1.03473 0.90918 0.98335 1.84354 1.63946 1.21654 1.38185 0.92913 0.92775 0.88281 0.86389 0.85645 0.90610 0.84281 0.87478 0.93122 0.90739 0.89945 0.93205 0.90984 0.99819 0.96738 0.94666 0.94801 0.93519 0.90470 0.92870 0.88329 0.87224 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.28 16 2 C -0.03 -0.19 6.56 29.85 0.20 0.00 16 3 C 0.20 3.69 7.56 88.39 0.67 4.36 16 4 N -0.47 -11.01 7.81 -293.05 -2.29 -13.30 16 5 C -0.09 -2.75 6.68 40.40 0.27 -2.48 16 6 C 0.59 21.47 7.68 86.66 0.67 22.14 16 7 O -0.57 -25.31 14.22 -4.06 -0.06 -25.37 16 8 N -0.59 -19.43 2.58 -824.13 -2.13 -21.56 16 9 C 0.08 1.87 6.11 86.36 0.53 2.40 16 10 C -0.12 -2.71 5.92 30.72 0.18 -2.53 16 11 C -0.10 -2.43 4.65 30.35 0.14 -2.29 16 12 C -0.07 -2.49 0.55 -51.92 -0.03 -2.52 16 13 C -0.11 -4.52 4.88 31.55 0.15 -4.36 16 14 C 0.19 10.56 4.99 86.77 0.43 10.99 16 15 N -0.62 -34.17 3.39 -692.79 -2.35 -36.51 16 16 C -0.24 -14.16 10.27 84.03 0.86 -13.30 16 17 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 18 C -0.07 -4.37 5.46 84.86 0.46 -3.91 16 19 N -0.95 -61.74 10.40 21.65 0.23 -61.52 16 20 Si 0.98 48.57 29.56 68.60 2.03 50.60 16 21 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.14 6.02 6.15 86.54 0.53 6.55 16 25 C 0.14 5.27 5.09 86.01 0.44 5.70 16 26 C 0.04 1.06 7.44 25.19 0.19 1.25 16 27 C -0.08 -1.72 9.95 71.24 0.71 -1.02 16 28 O -0.19 -4.08 10.73 0.27 0.00 -4.07 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.12 0.40 8.14 -2.39 -0.02 0.39 16 33 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.14 3.31 4.04 -23.86 -0.10 3.21 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.28 7.40 -2.39 -0.02 1.26 16 38 H 0.07 1.80 8.10 -2.38 -0.02 1.78 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 41 H 0.07 2.75 7.98 -2.39 -0.02 2.73 16 42 H -0.02 -1.06 7.81 -2.39 -0.02 -1.08 16 43 H 0.01 0.89 7.08 -2.39 -0.02 0.88 16 44 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.03 1.37 8.00 -2.39 -0.02 1.35 16 46 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16 47 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 48 H 0.05 2.56 6.61 -2.39 -0.02 2.55 16 49 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.09 2.57 6.37 -2.39 -0.02 2.55 16 Total: -1.00 -81.44 394.60 3.39 -78.06 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.84 Total: 12.98 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.11 Total: 20.70 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -6.54 Total: -132.89 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -81.44 3.39 -78.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054212852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.247 kcal (2) G-P(sol) polarization free energy of solvation -81.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds