Wall clock time and date at job start Wed Apr 1 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47009 * 2 1 4 4 N 1.30017 * 127.33512 * 270.04569 * 3 2 1 5 5 O 1.20664 * 112.29722 * 179.66216 * 4 3 2 6 6 C 1.33490 * 113.15803 * 0.50299 * 5 4 3 7 7 C 1.50702 * 126.82840 * 179.77519 * 6 5 4 8 8 C 1.37361 * 106.34449 * 359.51899 * 6 5 4 9 9 C 1.47394 * 128.56980 * 180.28306 * 8 6 5 10 10 O 1.21606 * 120.00218 * 89.96976 * 9 8 6 11 11 N 1.34776 * 119.99950 * 269.97558 * 9 8 6 12 12 C 1.46937 * 120.70340 * 359.97438 * 11 9 8 13 13 C 1.53177 * 108.93517 * 125.84756 * 12 11 9 14 14 C 1.53166 * 109.27915 * 55.21108 * 13 12 11 15 15 C 1.52244 * 109.64901 * 299.82985 * 14 13 12 16 16 C 1.54478 * 110.28983 * 181.99819 * 15 14 13 17 17 C 1.55028 * 101.52609 * 153.34597 * 16 15 14 18 18 N 1.47484 * 104.90800 * 323.65911 * 17 16 15 19 19 C 1.36942 * 125.66180 * 204.03750 * 18 17 16 20 20 H 1.08001 * 119.99699 * 161.54530 * 19 18 17 21 21 C 1.38811 * 119.99966 * 341.54676 * 19 18 17 22 22 N 1.31613 * 120.00258 * 157.54941 * 21 19 18 23 23 Si 1.86805 * 119.99885 * 337.54429 * 21 19 18 24 24 H 1.48494 * 109.46844 * 84.54230 * 23 21 19 25 25 H 1.48500 * 109.46826 * 204.53975 * 23 21 19 26 26 H 1.48502 * 109.47230 * 324.54220 * 23 21 19 27 27 C 1.47186 * 108.67376 * 24.01021 * 18 17 16 28 28 C 1.47073 * 120.70340 * 179.71806 * 11 9 8 29 29 H 1.08995 * 109.46865 * 60.00155 * 1 2 3 30 30 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47088 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47701 * 240.00375 * 2 1 3 33 33 H 1.08997 * 109.47178 * 119.99412 * 2 1 3 34 34 H 1.08999 * 109.47236 * 269.69137 * 7 6 5 35 35 H 1.09001 * 109.46792 * 29.68983 * 7 6 5 36 36 H 1.08999 * 109.46901 * 149.68543 * 7 6 5 37 37 H 1.09008 * 109.55849 * 245.68421 * 12 11 9 38 38 H 1.09004 * 109.56172 * 5.89568 * 12 11 9 39 39 H 1.08996 * 109.50967 * 175.15788 * 13 12 11 40 40 H 1.09007 * 109.50321 * 295.23273 * 13 12 11 41 41 H 1.09002 * 109.43965 * 59.88127 * 14 13 12 42 42 H 1.09001 * 109.44446 * 179.77436 * 14 13 12 43 43 H 1.08997 * 111.01681 * 271.40312 * 16 15 14 44 44 H 1.08999 * 111.01715 * 35.28795 * 16 15 14 45 45 H 1.08995 * 110.35369 * 204.79682 * 17 16 15 46 46 H 1.09007 * 110.44326 * 82.56163 * 17 16 15 47 47 H 0.96998 * 120.00354 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.91019 * 239.10032 * 27 18 17 49 49 H 1.08999 * 109.90572 * 117.83925 * 27 18 17 50 50 H 1.09005 * 109.57929 * 352.25445 * 28 11 9 51 51 H 1.09002 * 109.58346 * 112.65007 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2944 2.1646 -1.0338 5 8 2.6769 3.2654 -0.7207 6 6 2.7456 3.4411 0.6008 7 6 3.1858 4.6874 1.3246 8 6 2.3297 2.2620 1.1697 9 6 2.2102 1.9233 2.5992 10 8 1.1680 2.1344 3.1891 11 7 3.2562 1.3798 3.2526 12 6 4.5225 1.1177 2.5550 13 6 5.6622 1.7949 3.3224 14 6 5.6487 1.3137 4.7764 15 6 4.3194 1.6770 5.4236 16 6 4.3089 1.2427 6.9060 17 6 3.2996 2.2487 7.5164 18 7 3.5403 3.5124 6.7952 19 6 3.2490 4.7663 7.2624 20 1 3.7175 5.6311 6.8164 21 6 2.3515 4.9256 8.3094 22 7 2.3878 6.0149 9.0473 23 14 1.0921 3.5941 8.6708 24 1 1.7069 2.5520 9.5317 25 1 -0.0725 4.1917 9.3721 26 1 0.6409 2.9804 7.3961 27 6 4.1463 3.2023 5.4903 28 6 3.1561 1.0415 4.6804 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 4.2610 4.6459 1.4987 35 1 2.9494 5.5621 0.7187 36 1 2.6654 4.7557 2.2799 37 1 4.6997 0.0430 2.5117 38 1 4.4719 1.5201 1.5432 39 1 6.6155 1.5356 2.8621 40 1 5.5272 2.8762 3.2951 41 1 5.7810 0.2321 4.8018 42 1 6.4613 1.7910 5.3241 43 1 3.9515 0.2183 7.0107 44 1 5.2957 1.3584 7.3543 45 1 3.4904 2.3778 8.5818 46 1 2.2770 1.9082 7.3537 47 1 1.7604 6.1264 9.7786 48 1 5.1175 3.6902 5.4066 49 1 3.4896 3.5369 4.6872 50 1 2.2166 1.4224 5.0811 51 1 3.1955 -0.0409 4.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054238679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:12 Heat of formation + Delta-G solvation = 46.829819 kcal Electronic energy + Delta-G solvation = -33055.967486 eV Core-core repulsion = 28959.151399 eV Total energy + Delta-G solvation = -4096.816087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.02620 -40.55827 -38.52951 -36.10934 -35.50929 -33.83417 -33.07126 -32.13572 -31.54652 -30.67719 -28.84592 -28.18979 -26.45086 -25.88500 -24.76538 -23.89134 -23.43520 -21.87203 -20.85716 -20.38736 -19.64166 -18.24980 -18.02948 -17.61265 -16.81094 -16.56904 -16.05990 -15.43304 -15.19740 -15.03890 -14.62988 -14.49535 -14.03407 -13.97317 -13.68062 -13.48774 -13.45536 -13.22672 -13.09356 -12.93668 -12.85964 -12.68799 -12.63160 -12.11503 -12.02231 -11.85060 -11.72896 -11.58139 -11.29402 -11.07434 -11.05358 -10.95447 -10.81262 -10.47528 -10.27787 -10.17532 -10.04576 -9.92769 -9.84467 -9.43283 -9.37025 -8.66274 -8.62829 -6.99298 -5.90536 -3.20017 1.16632 1.73632 2.39707 2.63652 3.04941 3.38436 3.53953 3.59597 3.82318 4.07176 4.42164 4.59564 4.60790 4.74069 4.80068 4.83510 4.89387 4.92691 4.96277 5.05072 5.07059 5.16579 5.18469 5.23651 5.25857 5.38747 5.43134 5.45082 5.53956 5.54838 5.64477 5.69663 5.71452 5.74854 5.76947 5.80672 5.90801 5.96111 5.96612 6.10703 6.14031 6.22381 6.37460 6.41364 6.56628 6.67007 6.72225 6.80300 7.30580 7.75261 8.05370 8.09942 8.34816 8.87472 9.73757 10.22815 11.25711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003743 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.166101 B = 7479.243095 C = 7797.270715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C 0.056 3.944 4 N -0.356 5.356 5 O 0.094 5.906 6 C 0.021 3.979 7 C -0.083 4.083 8 C -0.243 4.243 9 C 0.598 3.402 10 O -0.515 6.515 11 N -0.597 5.597 12 C 0.111 3.889 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.088 4.088 16 C -0.119 4.119 17 C 0.109 3.891 18 N -0.607 5.607 19 C -0.239 4.239 20 H 0.090 0.910 21 C 0.023 3.977 22 N -0.910 5.910 23 Si 0.879 3.121 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.274 1.274 27 C 0.154 3.846 28 C 0.129 3.871 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.032 0.968 49 H 0.027 0.973 50 H 0.099 0.901 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 -13.367 -18.078 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.107 4.107 4 N -0.062 5.062 5 O 0.033 5.967 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.250 4.250 9 C 0.384 3.616 10 O -0.390 6.390 11 N -0.330 5.330 12 C -0.012 4.012 13 C -0.174 4.174 14 C -0.138 4.138 15 C -0.089 4.089 16 C -0.158 4.158 17 C -0.016 4.016 18 N -0.334 5.334 19 C -0.366 4.366 20 H 0.108 0.892 21 C -0.175 4.175 22 N -0.554 5.554 23 Si 0.709 3.291 24 H -0.213 1.213 25 H -0.231 1.231 26 H -0.199 1.199 27 C 0.028 3.972 28 C 0.008 3.992 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.045 0.955 50 H 0.117 0.883 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.446 -13.214 -18.924 23.715 hybrid contribution -0.842 -0.703 1.031 1.505 sum 4.605 -13.918 -17.893 23.131 Atomic orbital electron populations 1.21737 0.93433 1.02526 1.02953 1.19971 0.96939 0.87499 1.03842 1.24722 1.00698 0.98695 0.86558 1.73594 1.16773 0.92489 1.23357 1.84527 1.63044 1.26446 1.22708 1.24688 0.98360 0.97711 0.83475 1.20545 1.03094 0.90532 0.99813 1.21866 1.12378 0.95518 0.95272 1.16896 0.83590 0.77241 0.83872 1.90881 1.28284 1.52232 1.67566 1.47994 1.12488 1.61677 1.10806 1.21692 0.83311 1.00327 0.95897 1.21961 0.97674 1.01555 0.96209 1.21386 0.96772 1.00739 0.94880 1.21325 0.94450 0.97702 0.95448 1.22709 1.00782 0.98553 0.93728 1.21992 0.95697 0.86803 0.97071 1.44820 1.73279 1.01937 1.13357 1.18601 1.20603 0.82465 1.14951 0.89204 1.24957 0.98804 0.96324 0.97424 1.69836 1.38077 1.28385 1.19125 0.87039 0.82491 0.81653 0.77898 1.21290 1.23115 1.19924 1.21244 0.96486 0.90559 0.88884 1.21503 1.00613 0.98761 0.78369 0.92335 0.91434 0.91701 0.89613 0.89614 0.88557 0.88990 0.88189 0.91278 0.90450 0.90744 0.90902 0.91878 0.91025 0.91487 0.90624 0.92354 0.95786 0.92786 0.95047 0.95479 0.88254 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 37.16 0.37 -1.07 16 2 C -0.04 -0.43 6.55 -27.88 -0.18 -0.61 16 3 C 0.06 0.68 6.84 -79.76 -0.55 0.13 16 4 N -0.36 -4.55 12.01 34.78 0.42 -4.13 16 5 O 0.09 1.14 11.06 18.66 0.21 1.35 16 6 C 0.02 0.25 7.46 -34.63 -0.26 -0.01 16 7 C -0.08 -0.80 10.33 36.01 0.37 -0.43 16 8 C -0.24 -3.23 4.22 -102.89 -0.43 -3.66 16 9 C 0.60 9.30 7.49 -12.53 -0.09 9.21 16 10 O -0.51 -10.39 16.53 5.27 0.09 -10.31 16 11 N -0.60 -7.92 2.60 -174.66 -0.45 -8.37 16 12 C 0.11 1.07 6.32 -3.71 -0.02 1.05 16 13 C -0.14 -1.28 5.92 -26.55 -0.16 -1.44 16 14 C -0.10 -1.09 4.52 -27.03 -0.12 -1.21 16 15 C -0.09 -1.29 0.54 -154.30 -0.08 -1.38 16 16 C -0.12 -1.86 5.99 -24.88 -0.15 -2.01 16 17 C 0.11 2.36 4.40 -2.43 -0.01 2.35 16 18 N -0.61 -14.62 3.21 -170.23 -0.55 -15.17 16 19 C -0.24 -6.84 10.57 -15.06 -0.16 -7.00 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.02 0.69 5.43 -17.43 -0.09 0.59 16 22 N -0.91 -28.43 13.97 55.49 0.78 -27.66 16 23 Si 0.88 23.26 24.27 -169.99 -4.13 19.14 16 24 H -0.29 -7.18 6.49 56.52 0.37 -6.81 16 25 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 26 H -0.27 -7.35 6.66 56.52 0.38 -6.97 16 27 C 0.15 2.94 5.42 -3.33 -0.02 2.92 16 28 C 0.13 1.90 4.85 -4.25 -0.02 1.88 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.08 0.73 6.26 -51.93 -0.33 0.40 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.77 7.29 -51.93 -0.38 0.40 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 43 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 44 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 45 H 0.06 1.35 6.64 -51.93 -0.34 1.00 16 46 H 0.02 0.56 5.33 -51.92 -0.28 0.28 16 47 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.03 0.59 7.61 -51.93 -0.40 0.20 16 49 H 0.03 0.56 7.54 -51.93 -0.39 0.17 16 50 H 0.10 1.87 6.57 -51.93 -0.34 1.53 16 51 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -35.01 395.99 -7.68 -42.69 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -8.39 Total: -2.83 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.61 Total: -0.67 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.19 Total: -55.33 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.29 Total: -8.96 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.13 Total: 19.14 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.01 -7.68 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054238679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.518 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds