Wall clock time and date at job start Wed Apr 1 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47009 * 2 1 4 4 N 1.30017 * 127.33512 * 270.04569 * 3 2 1 5 5 O 1.20664 * 112.29722 * 179.66216 * 4 3 2 6 6 C 1.33490 * 113.15803 * 0.50299 * 5 4 3 7 7 C 1.50702 * 126.82840 * 179.77519 * 6 5 4 8 8 C 1.37361 * 106.34449 * 359.51899 * 6 5 4 9 9 C 1.47394 * 128.56980 * 180.28306 * 8 6 5 10 10 O 1.21606 * 120.00218 * 89.96976 * 9 8 6 11 11 N 1.34776 * 119.99950 * 269.97558 * 9 8 6 12 12 C 1.46937 * 120.70340 * 359.97438 * 11 9 8 13 13 C 1.53177 * 108.93517 * 125.84756 * 12 11 9 14 14 C 1.53166 * 109.27915 * 55.21108 * 13 12 11 15 15 C 1.52244 * 109.64901 * 299.82985 * 14 13 12 16 16 C 1.54478 * 110.28983 * 181.99819 * 15 14 13 17 17 C 1.55028 * 101.52609 * 153.34597 * 16 15 14 18 18 N 1.47484 * 104.90800 * 323.65911 * 17 16 15 19 19 C 1.36942 * 125.66180 * 204.03750 * 18 17 16 20 20 H 1.08001 * 119.99699 * 161.54530 * 19 18 17 21 21 C 1.38811 * 119.99966 * 341.54676 * 19 18 17 22 22 N 1.31613 * 120.00258 * 157.54941 * 21 19 18 23 23 Si 1.86805 * 119.99885 * 337.54429 * 21 19 18 24 24 H 1.48494 * 109.46844 * 84.54230 * 23 21 19 25 25 H 1.48500 * 109.46826 * 204.53975 * 23 21 19 26 26 H 1.48502 * 109.47230 * 324.54220 * 23 21 19 27 27 C 1.47186 * 108.67376 * 24.01021 * 18 17 16 28 28 C 1.47073 * 120.70340 * 179.71806 * 11 9 8 29 29 H 1.08995 * 109.46865 * 60.00155 * 1 2 3 30 30 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47088 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47701 * 240.00375 * 2 1 3 33 33 H 1.08997 * 109.47178 * 119.99412 * 2 1 3 34 34 H 1.08999 * 109.47236 * 269.69137 * 7 6 5 35 35 H 1.09001 * 109.46792 * 29.68983 * 7 6 5 36 36 H 1.08999 * 109.46901 * 149.68543 * 7 6 5 37 37 H 1.09008 * 109.55849 * 245.68421 * 12 11 9 38 38 H 1.09004 * 109.56172 * 5.89568 * 12 11 9 39 39 H 1.08996 * 109.50967 * 175.15788 * 13 12 11 40 40 H 1.09007 * 109.50321 * 295.23273 * 13 12 11 41 41 H 1.09002 * 109.43965 * 59.88127 * 14 13 12 42 42 H 1.09001 * 109.44446 * 179.77436 * 14 13 12 43 43 H 1.08997 * 111.01681 * 271.40312 * 16 15 14 44 44 H 1.08999 * 111.01715 * 35.28795 * 16 15 14 45 45 H 1.08995 * 110.35369 * 204.79682 * 17 16 15 46 46 H 1.09007 * 110.44326 * 82.56163 * 17 16 15 47 47 H 0.96998 * 120.00354 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.91019 * 239.10032 * 27 18 17 49 49 H 1.08999 * 109.90572 * 117.83925 * 27 18 17 50 50 H 1.09005 * 109.57929 * 352.25445 * 28 11 9 51 51 H 1.09002 * 109.58346 * 112.65007 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2944 2.1646 -1.0338 5 8 2.6769 3.2654 -0.7207 6 6 2.7456 3.4411 0.6008 7 6 3.1858 4.6874 1.3246 8 6 2.3297 2.2620 1.1697 9 6 2.2102 1.9233 2.5992 10 8 1.1680 2.1344 3.1891 11 7 3.2562 1.3798 3.2526 12 6 4.5225 1.1177 2.5550 13 6 5.6622 1.7949 3.3224 14 6 5.6487 1.3137 4.7764 15 6 4.3194 1.6770 5.4236 16 6 4.3089 1.2427 6.9060 17 6 3.2996 2.2487 7.5164 18 7 3.5403 3.5124 6.7952 19 6 3.2490 4.7663 7.2624 20 1 3.7175 5.6311 6.8164 21 6 2.3515 4.9256 8.3094 22 7 2.3878 6.0149 9.0473 23 14 1.0921 3.5941 8.6708 24 1 1.7069 2.5520 9.5317 25 1 -0.0725 4.1917 9.3721 26 1 0.6409 2.9804 7.3961 27 6 4.1463 3.2023 5.4903 28 6 3.1561 1.0415 4.6804 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 4.2610 4.6459 1.4987 35 1 2.9494 5.5621 0.7187 36 1 2.6654 4.7557 2.2799 37 1 4.6997 0.0430 2.5117 38 1 4.4719 1.5201 1.5432 39 1 6.6155 1.5356 2.8621 40 1 5.5272 2.8762 3.2951 41 1 5.7810 0.2321 4.8018 42 1 6.4613 1.7910 5.3241 43 1 3.9515 0.2183 7.0107 44 1 5.2957 1.3584 7.3543 45 1 3.4904 2.3778 8.5818 46 1 2.2770 1.9082 7.3537 47 1 1.7604 6.1264 9.7786 48 1 5.1175 3.6902 5.4066 49 1 3.4896 3.5369 4.6872 50 1 2.2166 1.4224 5.0811 51 1 3.1955 -0.0409 4.8031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054238679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:11 Heat of formation + Delta-G solvation = 24.006813 kcal Electronic energy + Delta-G solvation = -33056.957166 eV Core-core repulsion = 28959.151399 eV Total energy + Delta-G solvation = -4097.805766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.98155 -41.73082 -39.87403 -37.46807 -36.40044 -35.03034 -34.53879 -33.48024 -32.44833 -32.24924 -30.29262 -29.17331 -27.92614 -27.09077 -25.65078 -25.33481 -24.41830 -23.12987 -22.51431 -21.36880 -20.67729 -19.43705 -19.03634 -18.88503 -18.50069 -17.68366 -17.23146 -17.11241 -16.64038 -16.18563 -15.64282 -15.47189 -15.30743 -15.26364 -15.10698 -14.61026 -14.53358 -14.26221 -14.17453 -14.08182 -13.93871 -13.84216 -13.76830 -13.56881 -13.44965 -13.22364 -12.87391 -12.66938 -12.62821 -12.56404 -12.22977 -12.07893 -11.96902 -11.91128 -11.77628 -11.63236 -11.46655 -11.23447 -11.12700 -10.97403 -10.81863 -10.41035 -9.73444 -9.05621 -8.21607 -5.45486 0.20449 0.78561 1.21992 1.24199 1.34215 1.43035 1.62653 2.05930 2.36674 2.94211 3.03261 3.16944 3.33497 3.44631 3.57284 3.76982 3.80834 3.85581 4.05377 4.05756 4.09947 4.20387 4.21788 4.26362 4.27934 4.37120 4.40750 4.47626 4.55963 4.57767 4.68535 4.74996 4.79281 4.81278 4.82715 4.86035 4.89548 4.93040 4.97984 4.99549 5.08669 5.11381 5.18488 5.19575 5.23046 5.43865 5.46216 5.48722 5.66108 6.06985 6.23431 6.75760 6.95764 7.10372 7.52880 8.10281 8.98651 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003743 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.166101 B = 7479.243095 C = 7797.270715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.061 3.939 4 N -0.368 5.368 5 O 0.094 5.906 6 C 0.031 3.969 7 C -0.081 4.081 8 C -0.264 4.264 9 C 0.598 3.402 10 O -0.577 6.577 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.132 4.132 14 C -0.094 4.094 15 C -0.075 4.075 16 C -0.104 4.104 17 C 0.099 3.901 18 N -0.627 5.627 19 C -0.229 4.229 20 H 0.060 0.940 21 C -0.032 4.032 22 N -0.955 5.955 23 Si 0.939 3.061 24 H -0.262 1.262 25 H -0.309 1.309 26 H -0.286 1.286 27 C 0.153 3.847 28 C 0.130 3.870 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.036 0.964 49 H 0.006 0.994 50 H 0.050 0.950 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -17.040 -19.886 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.102 4.102 4 N -0.075 5.075 5 O 0.034 5.966 6 C -0.032 4.032 7 C -0.138 4.138 8 C -0.272 4.272 9 C 0.385 3.615 10 O -0.456 6.456 11 N -0.320 5.320 12 C -0.014 4.014 13 C -0.170 4.170 14 C -0.131 4.131 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.026 4.026 18 N -0.354 5.354 19 C -0.358 4.358 20 H 0.078 0.922 21 C -0.226 4.226 22 N -0.602 5.602 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.237 1.237 26 H -0.213 1.213 27 C 0.028 3.972 28 C 0.008 3.992 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.943 -16.932 -20.763 27.944 hybrid contribution -1.543 0.511 1.512 2.220 sum 6.399 -16.421 -19.250 26.100 Atomic orbital electron populations 1.21709 0.93693 1.03598 1.01315 1.20132 0.96602 0.86228 1.05335 1.25096 0.99750 0.99571 0.85737 1.73583 1.17608 0.92747 1.23610 1.84521 1.63107 1.26413 1.22529 1.24950 0.97162 0.97690 0.83428 1.20610 1.04011 0.90718 0.98491 1.21751 1.14245 0.96713 0.94474 1.17183 0.83209 0.76502 0.84562 1.90848 1.30803 1.54992 1.69003 1.48095 1.13293 1.60250 1.10360 1.22009 0.81285 1.02395 0.95712 1.21972 0.99116 1.00381 0.95552 1.21392 0.93636 1.02966 0.95139 1.21289 0.97025 0.93691 0.95634 1.22707 0.99655 0.98545 0.93326 1.22113 0.96951 0.87237 0.96297 1.45010 1.73072 1.01404 1.15905 1.18599 1.19325 0.83986 1.13912 0.92203 1.25502 1.00664 0.98437 0.98034 1.69940 1.39290 1.30579 1.20378 0.86063 0.80006 0.79803 0.77275 1.18764 1.23720 1.21303 1.21399 0.95337 0.94551 0.85865 1.21434 0.98251 1.00529 0.79001 0.92660 0.89032 0.94574 0.87348 0.88754 0.86312 0.86734 0.91122 0.88067 0.90001 0.87191 0.92786 0.88409 0.90789 0.87782 0.89061 0.94241 0.97192 0.92914 0.94638 0.97609 0.93125 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.90 71.98 0.71 -1.94 16 2 C -0.05 -0.78 6.55 29.85 0.20 -0.58 16 3 C 0.06 1.41 6.84 45.16 0.31 1.72 16 4 N -0.37 -8.91 12.01 -44.77 -0.54 -9.45 16 5 O 0.09 2.17 11.06 77.01 0.85 3.02 16 6 C 0.03 0.72 7.46 25.48 0.19 0.91 16 7 C -0.08 -1.56 10.33 71.24 0.74 -0.82 16 8 C -0.26 -6.93 4.22 -18.74 -0.08 -7.01 16 9 C 0.60 18.80 7.49 86.65 0.65 19.45 16 10 O -0.58 -24.65 16.53 -4.05 -0.07 -24.71 16 11 N -0.59 -14.64 2.60 -824.75 -2.15 -16.78 16 12 C 0.11 1.65 6.32 86.36 0.55 2.20 16 13 C -0.13 -1.91 5.92 30.71 0.18 -1.72 16 14 C -0.09 -1.58 4.52 30.40 0.14 -1.44 16 15 C -0.08 -2.01 0.54 -52.05 -0.03 -2.04 16 16 C -0.10 -2.91 5.99 31.79 0.19 -2.72 16 17 C 0.10 4.20 4.40 86.89 0.38 4.58 16 18 N -0.63 -30.89 3.21 -692.49 -2.22 -33.11 16 19 C -0.23 -13.70 10.57 84.03 0.89 -12.81 16 20 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 21 C -0.03 -1.96 5.43 84.86 0.46 -1.50 16 22 N -0.95 -62.09 13.97 21.65 0.30 -61.79 16 23 Si 0.94 50.13 24.27 68.60 1.66 51.80 16 24 H -0.26 -12.82 6.49 99.48 0.65 -12.17 16 25 H -0.31 -16.60 7.11 99.48 0.71 -15.89 16 26 H -0.29 -15.73 6.66 99.48 0.66 -15.06 16 27 C 0.15 5.87 5.42 86.47 0.47 6.34 16 28 C 0.13 3.57 4.85 85.93 0.42 3.99 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 37 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.25 6.26 -2.38 -0.01 1.23 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.00 7.29 -2.38 -0.02 0.98 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 43 H 0.10 2.22 7.98 -2.39 -0.02 2.20 16 44 H 0.09 2.33 8.02 -2.39 -0.02 2.31 16 45 H 0.04 1.81 6.64 -2.39 -0.02 1.79 16 46 H 0.01 0.48 5.33 -2.38 -0.01 0.46 16 47 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 48 H 0.04 1.33 7.61 -2.39 -0.02 1.31 16 49 H 0.01 0.25 7.54 -2.39 -0.02 0.23 16 50 H 0.05 1.93 6.57 -2.38 -0.02 1.92 16 51 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -83.52 395.99 5.02 -78.51 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.82 Total: 5.93 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.36 Total: 6.58 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -4.61 Total: -121.13 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.78 Total: -21.69 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.66 Total: 51.80 kcal Total: -83.52 5.02 -78.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054238679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.512 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds