Wall clock time and date at job start Wed Apr 1 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46945 * 2 1 4 4 O 1.33491 * 126.83094 * 274.98419 * 3 2 1 5 5 N 1.20661 * 113.15803 * 180.02562 * 4 3 2 6 6 C 1.30010 * 112.30101 * 359.72029 * 5 4 3 7 7 C 1.50704 * 127.33662 * 180.29850 * 6 5 4 8 8 C 1.37356 * 126.82960 * 95.00902 * 3 2 1 9 9 C 1.47404 * 128.56668 * 359.96050 * 8 3 2 10 10 O 1.21612 * 119.99798 * 274.98001 * 9 8 3 11 11 N 1.34778 * 119.99839 * 94.96942 * 9 8 3 12 12 C 1.46924 * 120.70168 * 354.91671 * 11 9 8 13 13 C 1.53192 * 108.91963 * 125.84892 * 12 11 9 14 14 C 1.53165 * 109.27070 * 55.23522 * 13 12 11 15 15 C 1.52243 * 109.66211 * 299.82126 * 14 13 12 16 16 C 1.54497 * 110.24968 * 297.05948 * 15 14 13 17 17 C 1.55029 * 101.52519 * 276.22978 * 16 15 14 18 18 N 1.47487 * 104.89487 * 323.64556 * 17 16 15 19 19 C 1.36950 * 125.65580 * 204.04255 * 18 17 16 20 20 H 1.08001 * 119.99344 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99840 * 359.95633 * 19 18 17 22 22 N 1.31616 * 120.00395 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99509 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47403 * 59.99955 * 23 21 19 25 25 H 1.48498 * 109.47000 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47032 * 300.00031 * 23 21 19 27 27 C 1.47181 * 108.68082 * 24.00403 * 18 17 16 28 28 C 1.47081 * 120.69617 * 174.93511 * 11 9 8 29 29 H 1.08999 * 109.47115 * 175.00344 * 1 2 3 30 30 H 1.09005 * 109.46815 * 295.00342 * 1 2 3 31 31 H 1.08995 * 109.47538 * 55.00191 * 1 2 3 32 32 H 1.09007 * 109.46757 * 240.00442 * 2 1 3 33 33 H 1.08997 * 109.47086 * 120.00225 * 2 1 3 34 34 H 1.09004 * 109.46939 * 270.14187 * 7 6 5 35 35 H 1.08998 * 109.46557 * 30.14249 * 7 6 5 36 36 H 1.09003 * 109.46776 * 150.14456 * 7 6 5 37 37 H 1.08996 * 109.56521 * 6.01686 * 12 11 9 38 38 H 1.09004 * 109.65943 * 245.73698 * 12 11 9 39 39 H 1.09001 * 109.50672 * 295.29678 * 13 12 11 40 40 H 1.08998 * 109.54264 * 175.19116 * 13 12 11 41 41 H 1.09005 * 109.44149 * 179.76878 * 14 13 12 42 42 H 1.09000 * 109.41173 * 59.86495 * 14 13 12 43 43 H 1.09000 * 111.02118 * 34.28603 * 16 15 14 44 44 H 1.08999 * 111.01729 * 158.16586 * 16 15 14 45 45 H 1.08995 * 110.35654 * 204.78974 * 17 16 15 46 46 H 1.08998 * 110.44265 * 82.53990 * 17 16 15 47 47 H 0.96996 * 119.99910 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.91209 * 239.12937 * 27 18 17 49 49 H 1.09003 * 109.91241 * 117.86269 * 27 18 17 50 50 H 1.09006 * 109.57297 * 112.61894 * 28 11 9 51 51 H 1.09002 * 109.57781 * 352.23264 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2115 2.2062 -1.0644 5 7 2.6261 3.3032 -0.7803 6 6 2.7913 3.4517 0.5006 7 6 3.2841 4.6794 1.2224 8 6 2.3973 2.1651 1.0952 9 6 2.3901 1.7735 2.5163 10 8 1.3704 1.8781 3.1707 11 7 3.5135 1.2992 3.0902 12 6 4.7222 1.0615 2.2895 13 6 5.8951 1.8146 2.9250 14 6 6.0337 1.3905 4.3903 15 6 4.7533 1.7240 5.1434 16 6 4.5171 3.2508 5.1466 17 6 5.3943 3.6974 6.3443 18 7 5.2625 2.6134 7.3357 19 6 5.4531 2.7391 8.6860 20 1 5.3316 1.8811 9.3306 21 6 5.8028 3.9691 9.2261 22 7 5.9507 5.0147 8.4405 23 14 6.0635 4.1403 11.0679 24 1 7.1586 3.2347 11.4992 25 1 6.4264 5.5442 11.3881 26 1 4.8121 3.7781 11.7807 27 6 4.8913 1.3746 6.6331 28 6 3.5552 1.0083 4.5314 29 1 -0.3633 -1.0237 -0.0895 30 1 -0.3633 0.4344 0.9314 31 1 -0.3634 0.5894 -0.8418 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.3700 4.6387 1.3087 35 1 2.9971 5.5695 0.6627 36 1 2.8417 4.7176 2.2179 37 1 4.5639 1.4231 1.2735 38 1 4.9431 -0.0057 2.2667 39 1 5.7100 2.8875 2.8727 40 1 6.8141 1.5773 2.3891 41 1 6.8703 1.9218 4.8442 42 1 6.2153 0.3169 4.4411 43 1 4.8651 3.7023 4.2175 44 1 3.4669 3.4835 5.3229 45 1 5.0234 4.6357 6.7568 46 1 6.4341 3.8044 6.0356 47 1 6.1954 5.8741 8.8179 48 1 3.9417 1.0008 7.0162 49 1 5.6700 0.6238 6.7677 50 1 3.6545 -0.0664 4.6843 51 1 2.6383 1.3629 5.0022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054238700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:24 Heat of formation + Delta-G solvation = 45.573512 kcal Electronic energy + Delta-G solvation = -32555.332348 eV Core-core repulsion = 28458.461783 eV Total energy + Delta-G solvation = -4096.870564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.06711 -40.44482 -38.44850 -35.91435 -35.10006 -34.71865 -33.05064 -31.92631 -30.76669 -30.01110 -28.94032 -28.65907 -26.22841 -25.70798 -24.46898 -23.92561 -23.21890 -22.18799 -20.56765 -20.15537 -19.43341 -18.21096 -18.04874 -17.53138 -16.81730 -16.62172 -15.96260 -15.47815 -15.11535 -14.71276 -14.65227 -14.42685 -14.06119 -13.80777 -13.56957 -13.41064 -13.34880 -13.31580 -13.15451 -12.89413 -12.79186 -12.55718 -12.31162 -12.00104 -11.93788 -11.77607 -11.56253 -11.23651 -11.15375 -11.01053 -10.89822 -10.79913 -10.57470 -10.31751 -10.13857 -10.05698 -10.04238 -9.89204 -9.70173 -9.54108 -9.45849 -8.63071 -8.58319 -6.81654 -5.63825 -3.05285 1.09372 1.73332 2.31784 2.60858 3.01427 3.41095 3.45391 3.46564 3.88984 4.00448 4.41042 4.49805 4.58472 4.71580 4.76528 4.79572 4.90731 4.99725 5.03632 5.12310 5.24243 5.26155 5.33881 5.34863 5.42944 5.44061 5.49802 5.51641 5.53731 5.60821 5.66799 5.81936 5.84679 5.85943 5.89005 5.91704 5.97462 6.08700 6.25927 6.36036 6.42957 6.44756 6.60315 6.69452 6.80031 6.92398 7.30018 7.53284 7.63832 7.87736 8.03302 8.03781 8.37946 9.23513 9.84498 10.49743 11.39854 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002799 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.126960 B =10000.356302 C =10305.518444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 C 0.013 3.987 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.058 3.942 7 C -0.080 4.080 8 C -0.238 4.238 9 C 0.599 3.401 10 O -0.525 6.525 11 N -0.593 5.593 12 C 0.110 3.890 13 C -0.136 4.136 14 C -0.099 4.099 15 C -0.084 4.084 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.602 5.602 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.150 3.850 28 C 0.130 3.870 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.103 0.897 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.024 0.976 50 H 0.066 0.934 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -9.852 -20.131 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 C -0.050 4.050 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.245 4.245 9 C 0.385 3.615 10 O -0.401 6.401 11 N -0.325 5.325 12 C -0.012 4.012 13 C -0.174 4.174 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.170 4.170 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.023 3.977 28 C 0.009 3.991 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.082 -8.855 -20.667 23.051 hybrid contribution 0.308 -0.155 1.626 1.663 sum -4.774 -9.009 -19.040 21.598 Atomic orbital electron populations 1.21791 0.92835 1.02952 1.03367 1.20219 0.97371 0.85750 1.04862 1.24622 0.99113 0.95991 0.85324 1.84518 1.61764 1.17145 1.33156 1.73622 1.16865 0.99228 1.16643 1.24788 1.00274 0.96442 0.88942 1.20275 1.02049 0.91496 0.99962 1.21921 1.11859 0.95423 0.95320 1.16884 0.83339 0.77056 0.84236 1.90833 1.31772 1.53982 1.63485 1.48024 1.11238 1.63672 1.09597 1.21714 0.84767 1.00264 0.94504 1.22001 0.97232 1.01165 0.96986 1.21347 0.97940 1.00750 0.93632 1.21344 0.93803 0.97420 0.95932 1.23027 1.00871 0.93149 0.99919 1.21910 0.94733 0.94671 0.85600 1.44512 1.81383 1.03972 1.02962 1.19029 1.39590 0.95047 0.81381 0.90595 1.24769 1.02053 0.95766 0.98036 1.69795 1.54455 1.00149 1.32695 0.86168 0.77959 0.76730 0.84727 1.21270 1.21611 1.21173 1.21141 0.97234 0.90745 0.88558 1.21631 1.00086 0.99258 0.78153 0.90994 0.91472 0.91932 0.88762 0.88574 0.89428 0.89899 0.89454 0.90636 0.91150 0.90932 0.90931 0.90661 0.92233 0.92477 0.92379 0.87931 0.97186 0.93748 0.95789 0.95851 0.91552 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.04 -0.31 6.41 -27.88 -0.18 -0.49 16 3 C 0.01 0.13 6.80 -34.63 -0.24 -0.10 16 4 O 0.10 1.08 11.06 18.65 0.21 1.29 16 5 N -0.36 -4.51 12.01 34.78 0.42 -4.09 16 6 C 0.06 0.71 7.56 -79.77 -0.60 0.11 16 7 C -0.08 -0.86 10.49 36.01 0.38 -0.49 16 8 C -0.24 -2.96 4.20 -102.89 -0.43 -3.39 16 9 C 0.60 8.56 7.39 -12.53 -0.09 8.46 16 10 O -0.52 -9.40 16.56 5.27 0.09 -9.31 16 11 N -0.59 -7.59 2.83 -174.40 -0.49 -8.08 16 12 C 0.11 1.12 6.33 -3.71 -0.02 1.10 16 13 C -0.14 -1.51 5.90 -26.55 -0.16 -1.66 16 14 C -0.10 -1.37 4.55 -27.03 -0.12 -1.50 16 15 C -0.08 -1.36 0.55 -154.09 -0.09 -1.45 16 16 C -0.13 -2.45 5.73 -24.87 -0.14 -2.59 16 17 C 0.16 3.70 5.57 -2.43 -0.01 3.69 16 18 N -0.60 -15.16 3.40 -170.24 -0.58 -15.74 16 19 C -0.22 -6.15 10.28 -15.05 -0.15 -6.31 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.15 3.01 6.43 -3.34 -0.02 2.99 16 28 C 0.13 1.88 4.97 -4.04 -0.02 1.86 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.10 0.68 8.00 -51.93 -0.42 0.27 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.73 6.30 -51.93 -0.33 0.40 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.96 6.00 -51.93 -0.31 0.64 16 44 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 45 H 0.10 2.81 5.88 -51.93 -0.31 2.50 16 46 H 0.01 0.26 7.76 -51.93 -0.40 -0.15 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.49 7.80 -51.93 -0.40 0.08 16 49 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.59 6.90 -51.93 -0.36 1.23 16 LS Contribution 399.14 15.07 6.02 6.02 Total: -1.00 -32.43 399.14 -8.69 -41.12 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.25 Total: -1.15 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.63 Total: -0.87 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.09 Total: -54.16 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.29 Total: -8.02 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.43 -8.69 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054238700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.698 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds