Wall clock time and date at job start Wed Apr 1 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46945 * 2 1 4 4 O 1.33491 * 126.83094 * 274.98419 * 3 2 1 5 5 N 1.20661 * 113.15803 * 180.02562 * 4 3 2 6 6 C 1.30010 * 112.30101 * 359.72029 * 5 4 3 7 7 C 1.50704 * 127.33662 * 180.29850 * 6 5 4 8 8 C 1.37356 * 126.82960 * 95.00902 * 3 2 1 9 9 C 1.47404 * 128.56668 * 359.96050 * 8 3 2 10 10 O 1.21612 * 119.99798 * 274.98001 * 9 8 3 11 11 N 1.34778 * 119.99839 * 94.96942 * 9 8 3 12 12 C 1.46924 * 120.70168 * 354.91671 * 11 9 8 13 13 C 1.53192 * 108.91963 * 125.84892 * 12 11 9 14 14 C 1.53165 * 109.27070 * 55.23522 * 13 12 11 15 15 C 1.52243 * 109.66211 * 299.82126 * 14 13 12 16 16 C 1.54497 * 110.24968 * 297.05948 * 15 14 13 17 17 C 1.55029 * 101.52519 * 276.22978 * 16 15 14 18 18 N 1.47487 * 104.89487 * 323.64556 * 17 16 15 19 19 C 1.36950 * 125.65580 * 204.04255 * 18 17 16 20 20 H 1.08001 * 119.99344 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99840 * 359.95633 * 19 18 17 22 22 N 1.31616 * 120.00395 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99509 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47403 * 59.99955 * 23 21 19 25 25 H 1.48498 * 109.47000 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47032 * 300.00031 * 23 21 19 27 27 C 1.47181 * 108.68082 * 24.00403 * 18 17 16 28 28 C 1.47081 * 120.69617 * 174.93511 * 11 9 8 29 29 H 1.08999 * 109.47115 * 175.00344 * 1 2 3 30 30 H 1.09005 * 109.46815 * 295.00342 * 1 2 3 31 31 H 1.08995 * 109.47538 * 55.00191 * 1 2 3 32 32 H 1.09007 * 109.46757 * 240.00442 * 2 1 3 33 33 H 1.08997 * 109.47086 * 120.00225 * 2 1 3 34 34 H 1.09004 * 109.46939 * 270.14187 * 7 6 5 35 35 H 1.08998 * 109.46557 * 30.14249 * 7 6 5 36 36 H 1.09003 * 109.46776 * 150.14456 * 7 6 5 37 37 H 1.08996 * 109.56521 * 6.01686 * 12 11 9 38 38 H 1.09004 * 109.65943 * 245.73698 * 12 11 9 39 39 H 1.09001 * 109.50672 * 295.29678 * 13 12 11 40 40 H 1.08998 * 109.54264 * 175.19116 * 13 12 11 41 41 H 1.09005 * 109.44149 * 179.76878 * 14 13 12 42 42 H 1.09000 * 109.41173 * 59.86495 * 14 13 12 43 43 H 1.09000 * 111.02118 * 34.28603 * 16 15 14 44 44 H 1.08999 * 111.01729 * 158.16586 * 16 15 14 45 45 H 1.08995 * 110.35654 * 204.78974 * 17 16 15 46 46 H 1.08998 * 110.44265 * 82.53990 * 17 16 15 47 47 H 0.96996 * 119.99910 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.91209 * 239.12937 * 27 18 17 49 49 H 1.09003 * 109.91241 * 117.86269 * 27 18 17 50 50 H 1.09006 * 109.57297 * 112.61894 * 28 11 9 51 51 H 1.09002 * 109.57781 * 352.23264 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2115 2.2062 -1.0644 5 7 2.6261 3.3032 -0.7803 6 6 2.7913 3.4517 0.5006 7 6 3.2841 4.6794 1.2224 8 6 2.3973 2.1651 1.0952 9 6 2.3901 1.7735 2.5163 10 8 1.3704 1.8781 3.1707 11 7 3.5135 1.2992 3.0902 12 6 4.7222 1.0615 2.2895 13 6 5.8951 1.8146 2.9250 14 6 6.0337 1.3905 4.3903 15 6 4.7533 1.7240 5.1434 16 6 4.5171 3.2508 5.1466 17 6 5.3943 3.6974 6.3443 18 7 5.2625 2.6134 7.3357 19 6 5.4531 2.7391 8.6860 20 1 5.3316 1.8811 9.3306 21 6 5.8028 3.9691 9.2261 22 7 5.9507 5.0147 8.4405 23 14 6.0635 4.1403 11.0679 24 1 7.1586 3.2347 11.4992 25 1 6.4264 5.5442 11.3881 26 1 4.8121 3.7781 11.7807 27 6 4.8913 1.3746 6.6331 28 6 3.5552 1.0083 4.5314 29 1 -0.3633 -1.0237 -0.0895 30 1 -0.3633 0.4344 0.9314 31 1 -0.3634 0.5894 -0.8418 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.3700 4.6387 1.3087 35 1 2.9971 5.5695 0.6627 36 1 2.8417 4.7176 2.2179 37 1 4.5639 1.4231 1.2735 38 1 4.9431 -0.0057 2.2667 39 1 5.7100 2.8875 2.8727 40 1 6.8141 1.5773 2.3891 41 1 6.8703 1.9218 4.8442 42 1 6.2153 0.3169 4.4411 43 1 4.8651 3.7023 4.2175 44 1 3.4669 3.4835 5.3229 45 1 5.0234 4.6357 6.7568 46 1 6.4341 3.8044 6.0356 47 1 6.1954 5.8741 8.8179 48 1 3.9417 1.0008 7.0162 49 1 5.6700 0.6238 6.7677 50 1 3.6545 -0.0664 4.6843 51 1 2.6383 1.3629 5.0022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054238700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:23 Heat of formation + Delta-G solvation = 27.141038 kcal Electronic energy + Delta-G solvation = -32556.131640 eV Core-core repulsion = 28458.461783 eV Total energy + Delta-G solvation = -4097.669856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.96916 -41.63603 -39.80682 -37.33220 -35.85577 -35.60838 -34.71905 -33.16169 -31.99163 -31.25789 -30.37636 -29.82738 -27.59964 -27.02760 -25.71031 -24.93002 -24.36404 -23.34220 -22.03982 -21.42776 -20.44773 -19.58286 -18.99593 -18.66269 -18.48319 -17.63702 -17.09973 -16.77649 -16.40377 -16.31300 -15.74573 -15.54346 -15.19516 -14.85240 -14.74749 -14.67167 -14.39627 -14.32153 -14.11018 -13.99555 -13.87488 -13.76892 -13.53929 -13.45023 -13.19101 -12.91798 -12.76213 -12.57441 -12.49139 -12.37584 -12.20196 -12.12168 -11.91022 -11.85951 -11.72029 -11.52442 -11.43263 -11.20755 -11.12219 -10.89830 -10.72337 -10.41829 -9.69095 -8.86977 -7.76613 -5.20421 0.25348 0.80150 1.25160 1.45520 1.48834 1.55001 1.70043 2.07890 2.49973 2.99764 3.19132 3.32451 3.48994 3.62627 3.66865 3.78988 3.88004 3.90344 4.09071 4.11810 4.22356 4.23256 4.26788 4.29716 4.44572 4.49365 4.51529 4.53518 4.63617 4.63986 4.70967 4.78516 4.79367 4.84622 4.89664 4.91959 4.95319 4.96732 5.03275 5.06204 5.16459 5.22021 5.30110 5.41288 5.46300 5.46929 5.51769 5.65364 5.83118 6.25976 6.31452 6.95878 7.11470 7.16590 7.79706 8.43989 9.25051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.002799 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.126960 B =10000.356302 C =10305.518444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.035 3.965 4 O 0.098 5.902 5 N -0.371 5.371 6 C 0.051 3.949 7 C -0.080 4.080 8 C -0.263 4.263 9 C 0.603 3.397 10 O -0.570 6.570 11 N -0.587 5.587 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.069 4.069 16 C -0.114 4.114 17 C 0.163 3.837 18 N -0.625 5.625 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.279 1.279 27 C 0.144 3.856 28 C 0.139 3.861 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.062 0.938 46 H -0.009 1.009 47 H 0.246 0.754 48 H 0.022 0.978 49 H 0.034 0.966 50 H 0.094 0.906 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 -12.473 -22.207 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.029 4.029 4 O 0.038 5.962 5 N -0.079 5.079 6 C -0.111 4.111 7 C -0.138 4.138 8 C -0.270 4.270 9 C 0.390 3.610 10 O -0.450 6.450 11 N -0.318 5.318 12 C -0.011 4.011 13 C -0.167 4.167 14 C -0.132 4.132 15 C -0.070 4.070 16 C -0.152 4.152 17 C 0.038 3.962 18 N -0.351 5.351 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.205 1.205 27 C 0.018 3.982 28 C 0.016 3.984 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.009 0.991 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.052 0.948 50 H 0.113 0.887 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.520 -11.513 -22.773 25.915 hybrid contribution 0.119 0.626 2.260 2.348 sum -4.402 -10.887 -20.513 23.637 Atomic orbital electron populations 1.21782 0.92845 1.04238 1.01902 1.20472 0.97173 0.83836 1.06752 1.25179 0.96709 0.96747 0.84268 1.84506 1.61471 1.16930 1.33310 1.73616 1.17656 0.99926 1.16663 1.24991 1.00260 0.96808 0.89056 1.20303 1.02731 0.91625 0.99109 1.21757 1.14310 0.96176 0.94746 1.17071 0.82937 0.76225 0.84735 1.90811 1.33559 1.55871 1.64718 1.48049 1.11922 1.62866 1.08967 1.21945 0.82767 1.02045 0.94309 1.21967 0.99102 1.00426 0.95217 1.21310 0.95045 1.01997 0.94895 1.21238 0.96321 0.95257 0.94171 1.22794 0.98442 0.95513 0.98476 1.21619 0.94260 0.93235 0.87103 1.44811 1.81381 1.06127 1.02780 1.19433 1.39003 0.95304 0.82975 0.90129 1.25618 1.02505 0.95597 1.02323 1.70068 1.55443 1.00245 1.34182 0.85143 0.78098 0.76340 0.79704 1.20233 1.22064 1.20496 1.21351 0.97077 0.89080 0.90656 1.21409 0.97593 1.00354 0.79031 0.88628 0.94235 0.91821 0.85395 0.88059 0.88143 0.88904 0.90988 0.89505 0.88046 0.92327 0.87967 0.93333 0.89744 0.90374 0.94331 0.91995 0.99136 0.94473 0.95962 0.94843 0.88747 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.04 -0.49 6.41 29.85 0.19 -0.30 16 3 C 0.03 0.64 6.80 25.48 0.17 0.81 16 4 O 0.10 2.01 11.06 77.00 0.85 2.87 16 5 N -0.37 -8.81 12.01 -44.78 -0.54 -9.35 16 6 C 0.05 1.20 7.56 45.16 0.34 1.54 16 7 C -0.08 -1.69 10.49 71.24 0.75 -0.94 16 8 C -0.26 -6.16 4.20 -18.74 -0.08 -6.24 16 9 C 0.60 16.70 7.39 86.66 0.64 17.34 16 10 O -0.57 -20.75 16.56 -4.07 -0.07 -20.82 16 11 N -0.59 -13.82 2.83 -823.94 -2.33 -16.15 16 12 C 0.11 1.83 6.33 86.36 0.55 2.37 16 13 C -0.13 -2.44 5.90 30.71 0.18 -2.26 16 14 C -0.09 -2.41 4.55 30.40 0.14 -2.27 16 15 C -0.07 -2.17 0.55 -51.91 -0.03 -2.20 16 16 C -0.11 -4.36 5.73 31.80 0.18 -4.17 16 17 C 0.16 8.12 5.57 86.89 0.48 8.61 16 18 N -0.62 -32.37 3.40 -692.52 -2.36 -34.73 16 19 C -0.24 -13.50 10.28 84.03 0.86 -12.64 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 22 N -0.95 -57.49 10.09 21.65 0.22 -57.28 16 23 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 C 0.14 5.77 6.43 86.46 0.56 6.33 16 28 C 0.14 3.80 4.97 86.07 0.43 4.23 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.10 1.08 8.00 -2.39 -0.02 1.06 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.33 6.30 -2.39 -0.02 1.31 16 38 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 1.29 6.23 -2.39 -0.01 1.28 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.52 7.49 -2.38 -0.02 1.50 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.08 2.64 6.00 -2.39 -0.01 2.62 16 44 H 0.04 1.61 7.91 -2.39 -0.02 1.59 16 45 H 0.06 3.61 5.88 -2.39 -0.01 3.60 16 46 H -0.01 -0.49 7.76 -2.39 -0.02 -0.51 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 49 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 50 H 0.09 2.11 8.14 -2.38 -0.02 2.10 16 51 H 0.07 2.27 6.90 -2.39 -0.02 2.25 16 Total: -1.00 -74.75 399.14 5.28 -69.47 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.93 Total: 12.03 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.54 Total: 5.66 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.00 Total: -117.50 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.78 Total: -17.95 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.75 5.28 -69.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054238700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.615 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds