Wall clock time and date at job start Wed Apr 1 2020 05:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47128 * 2 1 4 4 N 1.34655 * 125.80194 * 265.02701 * 3 2 1 5 5 H 0.96994 * 124.85172 * 359.72929 * 4 3 2 6 6 C 1.36447 * 110.29925 * 179.97438 * 4 3 2 7 7 C 1.34489 * 108.85442 * 0.02562 * 6 4 3 8 8 C 1.36772 * 125.79891 * 85.01786 * 3 2 1 9 9 C 1.47260 * 126.94327 * 0.02562 * 8 3 2 10 10 O 1.21628 * 120.00071 * 314.29108 * 9 8 3 11 11 N 1.34776 * 120.00312 * 134.29975 * 9 8 3 12 12 C 1.47158 * 121.05617 * 3.82879 * 11 9 8 13 13 C 1.52862 * 108.76528 * 231.08598 * 12 11 9 14 14 H 1.08996 * 109.36174 * 67.23210 * 13 12 11 15 15 C 1.53000 * 109.57633 * 187.33224 * 13 12 11 16 16 O 1.43089 * 109.30669 * 307.34657 * 13 12 11 17 17 C 1.42067 * 114.32859 * 61.03810 * 16 13 12 18 18 C 1.54524 * 110.33440 * 61.93047 * 17 16 13 19 19 C 1.55012 * 101.52055 * 83.95026 * 18 17 16 20 20 N 1.47482 * 104.90179 * 36.37536 * 19 18 17 21 21 C 1.36944 * 125.66185 * 155.95979 * 20 19 18 22 22 H 1.08003 * 119.99568 * 180.02562 * 21 20 19 23 23 C 1.38805 * 119.99995 * 0.02562 * 21 20 19 24 24 N 1.31618 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47311 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47279 * 120.00051 * 25 23 21 28 28 H 1.48503 * 109.46987 * 239.99832 * 25 23 21 29 29 C 1.47181 * 108.67593 * 335.97694 * 20 19 18 30 30 C 1.47309 * 121.06133 * 184.11815 * 11 9 8 31 31 H 1.08993 * 109.47140 * 299.99703 * 1 2 3 32 32 H 1.09001 * 109.46815 * 60.00077 * 1 2 3 33 33 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47305 * 239.99916 * 2 1 3 35 35 H 1.09001 * 109.46815 * 119.99923 * 2 1 3 36 36 H 1.07995 * 125.57504 * 179.97438 * 6 4 3 37 37 H 1.08002 * 126.83475 * 180.02562 * 7 6 4 38 38 H 1.08992 * 109.62881 * 350.86039 * 12 11 9 39 39 H 1.09001 * 109.62268 * 111.43373 * 12 11 9 40 40 H 1.09008 * 109.46760 * 179.89279 * 15 13 12 41 41 H 1.09004 * 109.47276 * 299.88845 * 15 13 12 42 42 H 1.08996 * 109.47452 * 59.89004 * 15 13 12 43 43 H 1.09004 * 111.01107 * 202.00947 * 18 17 16 44 44 H 1.08994 * 111.01796 * 325.88413 * 18 17 16 45 45 H 1.09002 * 110.35586 * 155.23065 * 19 18 17 46 46 H 1.08997 * 110.35299 * 277.41021 * 19 18 17 47 47 H 0.96998 * 120.00433 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.91152 * 242.14334 * 29 20 19 49 49 H 1.09000 * 109.91018 * 120.87675 * 29 20 19 50 50 H 1.08996 * 109.67966 * 250.30667 * 30 11 9 51 51 H 1.08996 * 109.67865 * 10.85544 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3842 2.1320 -1.0880 5 1 2.3554 1.8013 -1.9994 6 6 2.7921 3.3823 -0.7247 7 6 2.7088 3.4952 0.6128 8 6 2.2082 2.2072 1.1051 9 6 1.9479 1.8359 2.5062 10 8 0.9161 1.2640 2.8021 11 7 2.8530 2.1298 3.4606 12 6 4.0697 2.8944 3.1433 13 6 5.2818 2.1368 3.6853 14 1 5.4055 1.2076 3.1292 15 6 6.5366 2.9982 3.5290 16 8 5.0745 1.8412 5.0699 17 6 3.9437 1.0216 5.3305 18 6 4.1094 -0.3548 4.6479 19 6 4.9584 -1.1196 5.6954 20 7 4.4615 -0.6502 7.0022 21 6 4.5536 -1.3353 8.1844 22 1 4.1565 -0.9034 9.0911 23 6 5.1573 -2.5847 8.2172 24 7 5.6417 -3.1108 7.1122 25 14 5.2823 -3.5196 9.8296 26 1 4.6669 -2.7164 10.9165 27 1 4.5686 -4.8161 9.7067 28 1 6.7112 -3.7693 10.1475 29 6 3.8498 0.6767 6.8248 30 6 2.6589 1.6906 4.8532 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1279 4.1548 -1.4006 37 1 2.9597 4.3619 1.2064 38 1 4.1615 3.0046 2.0629 39 1 4.0168 3.8774 3.6113 40 1 7.3994 2.4571 3.9177 41 1 6.6938 3.2230 2.4741 42 1 6.4105 3.9279 4.0838 43 1 3.1429 -0.8370 4.5007 44 1 4.6453 -0.2609 3.7035 45 1 4.8059 -2.1942 5.5956 46 1 6.0142 -0.8749 5.5793 47 1 6.0632 -3.9841 7.1350 48 1 4.3931 1.4174 7.4115 49 1 2.8050 0.6482 7.1343 50 1 2.4383 2.5527 5.4826 51 1 1.8345 0.9793 4.9022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071164822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:26 Heat of formation + Delta-G solvation = 3.949606 kcal Electronic energy + Delta-G solvation = -32593.736267 eV Core-core repulsion = 28495.060754 eV Total energy + Delta-G solvation = -4098.675512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55227 -40.20690 -38.29217 -36.28421 -34.53329 -33.70938 -33.08266 -31.38237 -31.19824 -29.23551 -28.66059 -28.19283 -26.37183 -25.69442 -24.03262 -23.35888 -21.99901 -21.63960 -20.93948 -20.06356 -19.16036 -18.40250 -17.82509 -16.98582 -16.43225 -16.39905 -15.68493 -15.19216 -14.80178 -14.67217 -14.51133 -14.21592 -14.17137 -13.91748 -13.80923 -13.49099 -13.27717 -13.05532 -12.76334 -12.55549 -12.39452 -12.28936 -12.18502 -12.12872 -11.82123 -11.58606 -11.52437 -11.44457 -11.10499 -10.96346 -10.85164 -10.81926 -10.41066 -10.15086 -10.00700 -9.94101 -9.65975 -9.53869 -9.37653 -8.93774 -8.58861 -8.40692 -8.16346 -6.77043 -5.58843 -3.00269 1.79383 2.25391 2.82632 3.12837 3.35869 3.44548 3.49694 3.52461 3.94650 4.52151 4.53839 4.64496 4.81720 4.85218 4.94051 5.06612 5.17502 5.19046 5.23249 5.30460 5.36754 5.41865 5.47137 5.54551 5.57843 5.63773 5.67518 5.69111 5.70836 5.82259 5.87389 5.93386 5.97205 6.05937 6.07967 6.21733 6.23188 6.31547 6.49138 6.56021 6.60873 6.64740 6.68367 6.76823 6.78223 7.21888 7.56399 7.60975 7.68350 7.75137 7.92079 8.37882 8.41346 9.27866 9.88361 10.53745 11.45236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.003093 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.128329 B = 9049.819947 C = 9913.436429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C 0.097 3.903 4 N -0.553 5.553 5 H 0.415 0.585 6 C -0.015 4.015 7 C -0.172 4.172 8 C -0.221 4.221 9 C 0.594 3.406 10 O -0.541 6.541 11 N -0.604 5.604 12 C 0.075 3.925 13 C 0.068 3.932 14 H 0.064 0.936 15 C -0.140 4.140 16 O -0.354 6.354 17 C 0.097 3.903 18 C -0.164 4.164 19 C 0.161 3.839 20 N -0.602 5.602 21 C -0.218 4.218 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.154 3.846 30 C 0.100 3.900 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.013 0.987 47 H 0.250 0.750 48 H 0.036 0.964 49 H 0.039 0.961 50 H 0.069 0.931 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 14.045 -20.176 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.020 4.020 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.143 4.143 7 C -0.196 4.196 8 C -0.231 4.231 9 C 0.383 3.617 10 O -0.419 6.419 11 N -0.337 5.337 12 C -0.048 4.048 13 C 0.010 3.990 14 H 0.082 0.918 15 C -0.198 4.198 16 O -0.273 6.273 17 C 0.056 3.944 18 C -0.203 4.203 19 C 0.036 3.964 20 N -0.328 5.328 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.571 5.571 25 Si 0.746 3.254 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.027 3.973 30 C -0.023 4.023 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.031 0.969 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.088 0.912 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.661 13.602 -19.895 24.547 hybrid contribution 0.169 -0.438 0.115 0.484 sum -4.492 13.164 -19.780 24.181 Atomic orbital electron populations 1.21757 0.93632 1.02179 1.02876 1.20193 0.97111 0.89016 1.03451 1.20212 1.01260 0.94955 0.85605 1.41521 1.52537 1.12016 1.08692 0.74903 1.21697 1.08145 0.88044 0.96424 1.22005 1.06528 0.97444 0.93629 1.20064 1.14536 0.96416 0.92112 1.17413 0.82604 0.77835 0.83834 1.90755 1.25775 1.42902 1.82475 1.47973 1.21661 1.55153 1.08911 1.22613 0.84496 0.95028 1.02706 1.22376 0.94181 0.97878 0.84594 0.91779 1.21684 0.96571 0.99911 1.01608 1.87891 1.46988 1.69420 1.23035 1.22263 0.84367 0.90070 0.97672 1.23487 1.01704 0.95843 0.99253 1.21868 0.93029 1.00253 0.81265 1.44512 1.67984 1.14662 1.05644 1.19127 1.31740 0.98071 0.85723 0.90326 1.24778 1.00826 0.97685 0.97474 1.69821 1.44597 1.17757 1.24931 0.85987 0.77260 0.79713 0.82485 1.20506 1.21803 1.21838 1.21056 0.96888 0.89468 0.89866 1.22165 0.99102 1.00193 0.80798 0.90374 0.93475 0.92124 0.91290 0.89200 0.81407 0.83686 0.87830 0.91081 0.91301 0.91311 0.91808 0.91436 0.92218 0.87754 0.96859 0.93880 0.94582 0.94289 0.91229 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.06 -0.61 6.01 -27.88 -0.17 -0.78 16 3 C 0.10 1.04 6.43 -81.88 -0.53 0.51 16 4 N -0.55 -4.11 5.90 -9.11 -0.05 -4.16 16 5 H 0.41 1.75 8.96 -40.82 -0.37 1.39 16 6 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 7 C -0.17 -1.66 8.69 -37.50 -0.33 -1.99 16 8 C -0.22 -2.81 5.34 -103.35 -0.55 -3.36 16 9 C 0.59 9.32 7.33 -12.59 -0.09 9.23 16 10 O -0.54 -10.02 15.10 5.25 0.08 -9.94 16 11 N -0.60 -9.09 2.92 -174.21 -0.51 -9.60 16 12 C 0.07 0.93 5.26 -3.75 -0.02 0.91 16 13 C 0.07 0.97 3.16 -26.80 -0.08 0.89 16 14 H 0.06 0.98 6.13 -51.93 -0.32 0.67 16 15 C -0.14 -1.57 9.57 37.16 0.36 -1.21 16 16 O -0.35 -6.53 9.87 -35.23 -0.35 -6.88 16 17 C 0.10 1.85 0.83 -89.73 -0.07 1.77 16 18 C -0.16 -3.39 5.91 -24.87 -0.15 -3.54 16 19 C 0.16 4.11 5.89 -2.44 -0.01 4.09 16 20 N -0.60 -16.06 3.40 -170.25 -0.58 -16.64 16 21 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 C 0.15 3.40 6.61 -3.33 -0.02 3.37 16 30 C 0.10 1.68 5.15 -3.85 -0.02 1.66 16 31 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.15 1.21 7.53 -52.49 -0.39 0.81 16 38 H 0.10 1.10 4.54 -51.93 -0.24 0.87 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.42 7.86 -51.93 -0.41 1.02 16 44 H 0.06 1.15 5.98 -51.93 -0.31 0.84 16 45 H 0.10 2.97 5.88 -51.93 -0.31 2.67 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 49 H 0.04 0.83 7.79 -51.93 -0.40 0.42 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.10 1.85 6.92 -51.93 -0.36 1.49 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -34.71 393.93 -9.78 -44.49 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.07 Total: 2.97 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.77 Total: 3.24 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.58 Total: -57.34 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.27 Total: -16.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.71 -9.78 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071164822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.441 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds