Wall clock time and date at job start Wed Apr 1 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46748 * 2 1 4 4 N 1.34661 * 125.79963 * 265.05118 * 3 2 1 5 5 H 0.97003 * 124.84915 * 359.96149 * 4 3 2 6 6 C 1.36445 * 110.29931 * 179.97438 * 4 3 2 7 7 C 1.34487 * 108.85460 * 359.97438 * 6 4 3 8 8 C 1.36766 * 125.80179 * 85.00564 * 3 2 1 9 9 C 1.47258 * 126.94562 * 0.02562 * 8 3 2 10 10 O 1.21628 * 120.00113 * 318.58196 * 9 8 3 11 11 N 1.34772 * 120.00201 * 138.57753 * 9 8 3 12 12 C 1.47162 * 121.05963 * 184.21011 * 11 9 8 13 13 C 1.53287 * 108.49904 * 128.78386 * 12 11 9 14 14 H 1.09006 * 109.51420 * 293.00691 * 13 12 11 15 15 C 1.52998 * 109.51461 * 172.90782 * 13 12 11 16 16 O 1.43084 * 109.22520 * 52.98271 * 13 12 11 17 17 C 1.42065 * 114.39730 * 298.85445 * 16 13 12 18 18 C 1.54519 * 110.33689 * 182.56170 * 17 16 13 19 19 C 1.55020 * 101.52757 * 83.93774 * 18 17 16 20 20 N 1.47486 * 104.90251 * 36.37552 * 19 18 17 21 21 C 1.36934 * 125.66759 * 156.00136 * 20 19 18 22 22 H 1.07998 * 119.99990 * 149.69168 * 21 20 19 23 23 C 1.38813 * 119.99781 * 329.69644 * 21 20 19 24 24 N 1.31615 * 120.00042 * 159.24285 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 339.23860 * 23 21 20 26 26 H 1.48503 * 109.46812 * 93.77640 * 25 23 21 27 27 H 1.48498 * 109.47300 * 213.77625 * 25 23 21 28 28 H 1.48505 * 109.47257 * 333.77967 * 25 23 21 29 29 C 1.47181 * 108.66794 * 335.98000 * 20 19 18 30 30 C 1.47291 * 121.05854 * 3.92906 * 11 9 8 31 31 H 1.09000 * 109.47182 * 59.99836 * 1 2 3 32 32 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46718 * 299.99815 * 1 2 3 34 34 H 1.08996 * 109.46620 * 239.99852 * 2 1 3 35 35 H 1.08993 * 109.47002 * 119.99786 * 2 1 3 36 36 H 1.08001 * 125.57244 * 180.27211 * 6 4 3 37 37 H 1.07999 * 126.83227 * 179.97438 * 7 6 4 38 38 H 1.09003 * 109.63188 * 248.48603 * 12 11 9 39 39 H 1.08998 * 109.63469 * 9.08137 * 12 11 9 40 40 H 1.08998 * 109.47321 * 59.99728 * 15 13 12 41 41 H 1.09004 * 109.47365 * 180.02562 * 15 13 12 42 42 H 1.09009 * 109.47062 * 299.99702 * 15 13 12 43 43 H 1.08999 * 111.01299 * 201.99583 * 18 17 16 44 44 H 1.08995 * 111.01542 * 325.83996 * 18 17 16 45 45 H 1.09004 * 110.35398 * 155.23060 * 19 18 17 46 46 H 1.08997 * 110.35782 * 277.41032 * 19 18 17 47 47 H 0.97000 * 120.00509 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.91008 * 242.13861 * 29 20 19 49 49 H 1.09005 * 109.90803 * 120.87781 * 29 20 19 50 50 H 1.09001 * 109.63681 * 349.04687 * 30 11 9 51 51 H 1.08992 * 109.64360 * 109.66137 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3836 2.1321 -1.0881 5 1 2.3515 1.8026 -1.9999 6 6 2.7916 3.3825 -0.7249 7 6 2.7078 3.4956 0.6126 8 6 2.2079 2.2074 1.1050 9 6 1.9474 1.8362 2.5060 10 8 0.9532 1.1960 2.7908 11 7 2.8106 2.2059 3.4728 12 6 2.6223 1.7704 4.8659 13 6 3.9353 1.1570 5.3653 14 1 4.1348 0.2326 4.8231 15 6 3.8229 0.8576 6.8615 16 8 5.0030 2.0830 5.1421 17 6 5.2151 2.4162 3.7775 18 6 6.4248 3.3675 3.6387 19 6 7.6070 2.3649 3.6222 20 7 7.1021 1.1954 2.8789 21 6 7.8720 0.2782 2.2148 22 1 7.5369 -0.7446 2.1254 23 6 9.0833 0.6630 1.6567 24 7 10.0010 -0.2414 1.3879 25 14 9.4110 2.4645 1.2868 26 1 10.1184 3.0849 2.4357 27 1 10.2534 2.5745 0.0688 28 1 8.1216 3.1662 1.0620 29 6 5.6332 1.1775 2.9701 30 6 3.9758 3.0535 3.1676 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1228 4.1565 -1.4013 37 1 2.9593 4.3621 1.2061 38 1 2.3598 2.6281 5.4853 39 1 1.8287 1.0248 4.9124 40 1 3.0066 0.1556 7.0313 41 1 4.7571 0.4218 7.2160 42 1 3.6253 1.7826 7.4033 43 1 6.3754 3.9291 2.7058 44 1 6.4935 4.0397 4.4940 45 1 8.4650 2.7989 3.1087 46 1 7.8782 2.0817 4.6392 47 1 10.8473 0.0274 0.9975 48 1 5.3040 0.2729 3.4811 49 1 5.1988 1.2215 1.9713 50 1 4.0992 3.1315 2.0874 51 1 3.8294 4.0454 3.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071164823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:28 Heat of formation + Delta-G solvation = -16.191541 kcal Electronic energy + Delta-G solvation = -33208.066648 eV Core-core repulsion = 29108.517751 eV Total energy + Delta-G solvation = -4099.548898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40689 -41.49975 -39.72009 -38.00361 -35.90366 -34.88437 -34.52825 -33.45325 -32.02851 -31.24421 -30.08195 -29.28976 -27.98688 -27.33895 -25.27142 -24.46114 -23.40079 -22.79452 -22.31920 -21.68565 -20.56493 -19.56023 -19.05397 -18.57373 -17.95028 -17.52685 -17.43396 -16.95299 -16.35789 -15.94878 -15.54697 -15.50614 -15.29699 -15.23737 -15.14389 -14.81867 -14.68192 -14.42422 -14.19833 -14.14047 -13.94668 -13.48681 -13.31492 -13.25437 -13.18794 -13.02284 -12.95664 -12.85539 -12.68844 -12.43723 -12.35145 -12.33161 -12.17558 -11.93715 -11.86307 -11.61888 -11.37096 -10.98876 -10.83744 -10.68576 -9.72915 -9.48928 -9.08941 -8.94295 -8.23503 -5.58551 0.87227 1.29987 1.39014 1.52439 1.55221 1.81119 2.31248 2.40506 2.41611 2.56826 2.98018 3.24977 3.52396 3.68861 3.72431 3.76632 3.80965 3.92420 4.04478 4.07831 4.20706 4.31283 4.35467 4.38001 4.40426 4.48756 4.52584 4.57995 4.64112 4.67803 4.68298 4.72721 4.76986 4.88125 4.90208 4.93316 4.96114 5.01217 5.05017 5.07253 5.19858 5.22201 5.24301 5.34057 5.45957 5.71951 5.81617 6.01235 6.07031 6.26878 6.35866 6.67613 6.73613 7.19353 7.47276 8.10331 8.97210 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.004834 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.237249 B = 5791.485825 C = 7381.441846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C 0.089 3.911 4 N -0.540 5.540 5 H 0.431 0.569 6 C 0.001 3.999 7 C -0.191 4.191 8 C -0.259 4.259 9 C 0.593 3.407 10 O -0.576 6.576 11 N -0.610 5.610 12 C 0.091 3.909 13 C 0.068 3.932 14 H 0.038 0.962 15 C -0.133 4.133 16 O -0.366 6.366 17 C 0.103 3.897 18 C -0.108 4.108 19 C 0.114 3.886 20 N -0.621 5.621 21 C -0.247 4.247 22 H 0.036 0.964 23 C -0.028 4.028 24 N -0.954 5.954 25 Si 0.958 3.042 26 H -0.273 1.273 27 H -0.306 1.306 28 H -0.247 1.247 29 C 0.124 3.876 30 C 0.093 3.907 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.206 0.794 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.034 0.966 46 H 0.028 0.972 47 H 0.265 0.735 48 H 0.012 0.988 49 H 0.028 0.972 50 H 0.115 0.885 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.872 11.473 -0.638 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.030 4.030 4 N -0.136 5.136 5 H 0.270 0.730 6 C -0.127 4.127 7 C -0.215 4.215 8 C -0.269 4.269 9 C 0.384 3.616 10 O -0.457 6.457 11 N -0.342 5.342 12 C -0.031 4.031 13 C 0.009 3.991 14 H 0.056 0.944 15 C -0.190 4.190 16 O -0.285 6.285 17 C 0.062 3.938 18 C -0.146 4.146 19 C -0.010 4.010 20 N -0.348 5.348 21 C -0.376 4.376 22 H 0.054 0.946 23 C -0.224 4.224 24 N -0.599 5.599 25 Si 0.786 3.214 26 H -0.200 1.200 27 H -0.235 1.235 28 H -0.171 1.171 29 C -0.001 4.001 30 C -0.030 4.030 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.223 0.777 37 H 0.178 0.822 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.046 0.954 50 H 0.133 0.867 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.113 11.094 -0.578 22.106 hybrid contribution 0.756 -0.449 -0.765 1.165 sum -18.357 10.645 -1.343 21.263 Atomic orbital electron populations 1.21650 0.93048 1.02495 1.02135 1.20164 0.97447 0.88985 1.03147 1.20303 1.01188 0.95195 0.86322 1.41563 1.51144 1.11902 1.08972 0.73000 1.22319 1.05581 0.88262 0.96557 1.22253 1.07347 0.97157 0.94741 1.20121 1.17086 0.98326 0.91417 1.17763 0.81537 0.77455 0.84828 1.90689 1.28738 1.42599 1.83673 1.48044 1.26218 1.51546 1.08375 1.22332 0.97910 1.01398 0.81491 1.22610 0.86089 0.91394 0.98961 0.94401 1.21682 1.03064 1.03374 0.90894 1.87807 1.53394 1.63535 1.23799 1.22055 0.95259 0.94129 0.82351 1.22763 0.90984 0.96240 1.04606 1.22026 0.96267 0.87976 0.94710 1.44699 1.01405 1.29544 1.59140 1.18364 1.01230 0.89099 1.28905 0.94594 1.25967 0.96024 1.02414 0.97983 1.69976 1.06433 1.36029 1.47449 0.85625 0.78347 0.80976 0.76431 1.20024 1.23469 1.17078 1.21878 0.84590 0.96556 0.97088 1.22558 0.82620 0.94187 1.03618 0.91815 0.91186 0.93253 0.89105 0.92090 0.77725 0.82202 0.88758 0.88815 0.89077 0.92327 0.90088 0.88051 0.86748 0.94880 0.95379 0.92587 0.96992 0.95370 0.86701 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.89 71.98 0.71 -2.14 16 2 C -0.06 -1.38 5.88 29.85 0.18 -1.20 16 3 C 0.09 2.19 6.43 41.78 0.27 2.46 16 4 N -0.54 -9.72 5.90 -182.72 -1.08 -10.80 16 5 H 0.43 4.86 8.96 -92.71 -0.83 4.03 16 6 C 0.00 0.02 11.89 83.12 0.99 1.01 16 7 C -0.19 -4.18 8.65 23.62 0.20 -3.98 16 8 C -0.26 -7.25 5.47 -19.04 -0.10 -7.36 16 9 C 0.59 18.74 7.38 86.62 0.64 19.38 16 10 O -0.58 -20.66 14.87 -4.12 -0.06 -20.72 16 11 N -0.61 -17.35 2.95 -823.32 -2.43 -19.78 16 12 C 0.09 2.34 5.90 86.35 0.51 2.85 16 13 C 0.07 1.91 3.17 30.69 0.10 2.01 16 14 H 0.04 1.30 6.25 -2.38 -0.01 1.28 16 15 C -0.13 -2.84 9.57 71.98 0.69 -2.15 16 16 O -0.37 -11.74 9.90 -148.97 -1.47 -13.22 16 17 C 0.10 3.34 0.80 -10.35 -0.01 3.33 16 18 C -0.11 -3.35 6.21 31.80 0.20 -3.15 16 19 C 0.11 4.88 6.26 86.88 0.54 5.42 16 20 N -0.62 -31.16 3.03 -692.51 -2.10 -33.27 16 21 C -0.25 -14.88 10.51 84.03 0.88 -14.00 16 22 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 23 C -0.03 -1.68 5.43 84.86 0.46 -1.22 16 24 N -0.95 -60.98 13.97 21.65 0.30 -60.67 16 25 Si 0.96 46.08 24.78 68.60 1.70 47.78 16 26 H -0.27 -12.51 6.79 99.48 0.68 -11.84 16 27 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.25 -10.81 7.07 99.48 0.70 -10.10 16 29 C 0.12 5.28 6.34 86.47 0.55 5.83 16 30 C 0.09 2.43 4.37 85.94 0.38 2.80 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.32 6.82 -2.38 -0.02 1.30 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 36 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.16 2.86 7.19 -2.91 -0.02 2.84 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 2.50 7.11 -2.39 -0.02 2.49 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.10 2.80 8.01 -2.39 -0.02 2.78 16 44 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.03 1.48 2.83 -2.38 -0.01 1.48 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 48 H 0.01 0.56 6.03 -2.39 -0.01 0.55 16 49 H 0.03 1.25 7.59 -2.38 -0.02 1.23 16 50 H 0.12 3.03 4.08 -2.39 -0.01 3.02 16 51 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -80.24 389.29 2.12 -78.12 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.09 Total: 22.68 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.18 Total: 9.88 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.31 Total: -124.52 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.54 Total: -33.94 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.70 Total: 47.78 kcal Total: -80.24 2.12 -78.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071164823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.924 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds