Wall clock time and date at job start Wed Apr 1 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47123 * 2 1 4 4 C 1.36776 * 125.80387 * 269.99859 * 3 2 1 5 5 C 1.47261 * 126.93726 * 0.02562 * 4 3 2 6 6 O 1.21624 * 120.00224 * 330.66020 * 5 4 3 7 7 N 1.34780 * 119.99851 * 150.65408 * 5 4 3 8 8 C 1.46835 * 120.40845 * 4.55539 * 7 5 4 9 9 C 1.53371 * 109.25120 * 232.27451 * 8 7 5 10 10 C 1.52795 * 108.81166 * 306.16655 * 9 8 7 11 11 H 1.08997 * 108.95980 * 303.06636 * 10 9 8 12 12 O 1.42604 * 111.10864 * 182.53031 * 10 9 8 13 13 C 1.43146 * 113.63393 * 176.39046 * 12 10 9 14 14 C 1.53193 * 109.69706 * 61.70710 * 13 12 10 15 15 N 1.47326 * 108.81260 * 308.71142 * 14 13 12 16 16 C 1.36942 * 121.34690 * 230.30335 * 15 14 13 17 17 H 1.08003 * 120.00029 * 153.72640 * 16 15 14 18 18 C 1.38811 * 119.99738 * 333.72666 * 16 15 14 19 19 N 1.31610 * 120.00534 * 344.15756 * 18 16 15 20 20 Si 1.86804 * 119.99495 * 164.15785 * 18 16 15 21 21 H 1.48500 * 109.47196 * 90.00172 * 20 18 16 22 22 H 1.48497 * 109.47092 * 209.99892 * 20 18 16 23 23 H 1.48504 * 109.47085 * 329.99876 * 20 18 16 24 24 C 1.46875 * 117.34884 * 50.32933 * 15 14 13 25 25 H 1.09003 * 109.65385 * 67.61236 * 24 15 14 26 26 C 1.47133 * 120.41115 * 184.58198 * 7 5 4 27 27 C 1.46677 * 106.11662 * 180.28189 * 4 3 2 28 28 C 1.34484 * 106.33628 * 359.56974 * 27 4 3 29 29 N 1.34663 * 125.80353 * 90.02521 * 3 2 1 30 30 C 1.46500 * 124.84815 * 359.97438 * 29 3 2 31 31 H 1.09001 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47005 * 300.00110 * 1 2 3 33 33 H 1.08993 * 109.46838 * 60.00249 * 1 2 3 34 34 H 1.08999 * 109.47342 * 239.99523 * 2 1 3 35 35 H 1.09000 * 109.47118 * 120.00010 * 2 1 3 36 36 H 1.09002 * 109.51092 * 352.20520 * 8 7 5 37 37 H 1.09000 * 109.50876 * 112.34412 * 8 7 5 38 38 H 1.09000 * 109.58252 * 186.36887 * 9 8 7 39 39 H 1.08996 * 109.57713 * 65.96177 * 9 8 7 40 40 H 1.08991 * 109.42649 * 181.76986 * 13 12 10 41 41 H 1.09001 * 109.42258 * 301.65246 * 13 12 10 42 42 H 1.09000 * 109.58052 * 68.56765 * 14 13 12 43 43 H 1.09002 * 109.57783 * 188.97534 * 14 13 12 44 44 H 0.97003 * 120.00245 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.72094 * 7.07734 * 26 7 5 46 46 H 1.09004 * 109.75874 * 246.43488 * 26 7 5 47 47 H 1.08009 * 126.83348 * 179.73964 * 27 4 3 48 48 H 1.07998 * 125.57827 * 180.14621 * 28 27 4 49 49 H 1.08995 * 109.46971 * 90.00499 * 30 29 3 50 50 H 1.09004 * 109.47098 * 210.00129 * 30 29 3 51 51 H 1.08997 * 109.47474 * 330.00178 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2991 2.1751 -1.1093 5 6 2.1530 1.7634 -2.5156 6 8 2.2867 0.5945 -2.8241 7 7 1.8710 2.6818 -3.4609 8 6 1.8061 4.1076 -3.1159 9 6 0.4749 4.6873 -3.6100 10 6 0.3252 4.3781 -5.0988 11 1 1.1831 4.7862 -5.6332 12 8 -0.8725 4.9470 -5.6237 13 6 -1.0265 4.7598 -7.0344 14 6 -1.0993 3.2628 -7.3517 15 7 0.0448 2.5863 -6.7161 16 6 0.8541 1.7383 -7.4242 17 1 1.8785 1.5876 -7.1171 18 6 0.3577 1.0725 -8.5365 19 7 -0.9413 1.0007 -8.7351 20 14 1.5337 0.2785 -9.7514 21 1 1.7989 -1.1234 -9.3396 22 1 0.9272 0.2898 -11.1069 23 1 2.8097 1.0378 -9.7737 24 6 0.2828 2.8570 -5.2923 25 1 -0.5275 2.4342 -4.6983 26 6 1.6240 2.2682 -4.8510 27 6 2.7660 3.4749 -0.6152 28 6 2.7340 3.4029 0.7274 29 7 2.2954 2.1633 1.0922 30 6 2.1337 1.7057 2.4744 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.8745 4.2239 -2.0342 37 1 2.6321 4.6354 -3.5924 38 1 0.4678 5.7667 -3.4585 39 1 -0.3483 4.2335 -3.0582 40 1 -1.9437 5.2458 -7.3666 41 1 -0.1748 5.1994 -7.5535 42 1 -2.0304 2.8516 -6.9619 43 1 -1.0560 3.1156 -8.4309 44 1 -1.2882 0.5357 -9.5126 45 1 1.5856 1.1804 -4.9098 46 1 2.4200 2.6434 -5.4942 47 1 3.0718 4.3223 -1.2110 48 1 3.0144 4.1948 1.4060 49 1 3.0623 1.2494 2.8170 50 1 1.8894 2.5553 3.1122 51 1 1.3290 0.9721 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074339648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:37 Heat of formation + Delta-G solvation = 15.356866 kcal Electronic energy + Delta-G solvation = -32542.419236 eV Core-core repulsion = 28444.238379 eV Total energy + Delta-G solvation = -4098.180856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57280 -39.67426 -38.21465 -35.91858 -34.65396 -33.73227 -33.10306 -31.51339 -31.27332 -29.79657 -28.43590 -27.46057 -26.49219 -25.14763 -23.89445 -23.45899 -22.19583 -21.78157 -20.79400 -20.07105 -19.50949 -18.18440 -17.08596 -16.67222 -16.31846 -15.67102 -15.48850 -15.25596 -15.00978 -14.86161 -14.46775 -14.31343 -14.04990 -13.78624 -13.64642 -13.45854 -13.39012 -12.96579 -12.91526 -12.86382 -12.73913 -12.54665 -12.17988 -12.06543 -11.94777 -11.54772 -11.43632 -11.21449 -11.00620 -10.90453 -10.85717 -10.65869 -10.46892 -10.17343 -10.15941 -9.88755 -9.53891 -9.40980 -8.91278 -8.59786 -8.47413 -8.30009 -8.05808 -6.67870 -5.78043 -3.21760 1.86921 2.34199 2.65637 3.39613 3.40993 3.47052 3.49155 3.69787 4.37264 4.45831 4.49647 4.54587 4.75149 4.79722 4.96361 5.06010 5.08998 5.10298 5.26613 5.34849 5.37123 5.38977 5.47517 5.49988 5.57305 5.67177 5.73079 5.81869 5.84716 5.91073 5.92813 6.03063 6.07342 6.16127 6.18078 6.21027 6.26518 6.36306 6.42447 6.56587 6.68961 6.78175 6.85858 6.97126 7.03596 7.12649 7.21473 7.56297 7.77472 7.88571 7.97083 8.38051 8.66993 9.16244 9.79902 10.37353 11.30124 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003346 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.706150 B = 8366.097013 C = 9386.683039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.101 3.899 4 C -0.221 4.221 5 C 0.590 3.410 6 O -0.547 6.547 7 N -0.604 5.604 8 C 0.085 3.915 9 C -0.123 4.123 10 C 0.077 3.923 11 H 0.051 0.949 12 O -0.390 6.390 13 C 0.039 3.961 14 C 0.142 3.858 15 N -0.588 5.588 16 C -0.255 4.255 17 H 0.073 0.927 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.138 3.862 25 H 0.036 0.964 26 C 0.126 3.874 27 C -0.178 4.178 28 C -0.018 4.018 29 N -0.446 5.446 30 C 0.068 3.932 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.096 0.904 44 H 0.254 0.746 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.157 0.843 48 H 0.166 0.834 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 6.902 21.745 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.015 4.015 4 C -0.231 4.231 5 C 0.380 3.620 6 O -0.426 6.426 7 N -0.336 5.336 8 C -0.038 4.038 9 C -0.162 4.162 10 C 0.017 3.983 11 H 0.069 0.931 12 O -0.310 6.310 13 C -0.039 4.039 14 C 0.016 3.984 15 N -0.313 5.313 16 C -0.384 4.384 17 H 0.090 0.910 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.030 3.970 25 H 0.053 0.947 26 C 0.004 3.996 27 C -0.202 4.202 28 C -0.144 4.144 29 N -0.122 5.122 30 C -0.074 4.074 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.174 0.826 48 H 0.183 0.817 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.929 6.189 21.869 23.256 hybrid contribution 0.596 -0.319 -0.897 1.124 sum 5.525 5.870 20.972 22.468 Atomic orbital electron populations 1.21701 0.94213 1.02150 1.02043 1.20358 0.96407 0.89464 1.04474 1.20224 1.01838 0.94384 0.85029 1.20149 1.15035 0.95751 0.92156 1.17370 0.75981 0.84805 0.83857 1.90737 1.51818 1.17904 1.82147 1.48007 1.69464 1.06634 1.09503 1.22487 0.96849 0.81026 1.03406 1.21860 0.97955 1.01067 0.95276 1.22446 0.87528 0.95130 0.93177 0.93148 1.87736 1.41770 1.77980 1.23471 1.23324 0.99924 0.99901 0.80725 1.21444 0.89615 0.86894 1.00400 1.44052 1.33101 1.51300 1.02848 1.19160 0.92276 1.18887 1.08048 0.90952 1.25031 0.95541 0.98032 1.00812 1.70019 1.10572 1.45149 1.28978 0.86289 0.80362 0.79487 0.80646 1.21222 1.21572 1.20410 1.21287 0.95139 0.92527 0.88013 0.94657 1.21709 0.96731 1.02345 0.78813 1.22216 1.07529 0.97153 0.93331 1.21700 1.08252 0.88284 0.96201 1.43498 1.51143 1.11606 1.05968 1.22071 1.03240 1.01810 0.80239 0.91841 0.93393 0.91878 0.87301 0.91472 0.86500 0.91778 0.90598 0.91069 0.90177 0.94179 0.95524 0.88558 0.93576 0.88114 0.91196 0.82589 0.81690 0.90828 0.89677 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.90 37.16 0.37 -1.22 16 2 C -0.07 -0.81 5.61 -27.88 -0.16 -0.97 16 3 C 0.10 1.27 6.14 -81.88 -0.50 0.77 16 4 C -0.22 -3.22 5.83 -103.35 -0.60 -3.82 16 5 C 0.59 10.69 7.56 -12.59 -0.10 10.59 16 6 O -0.55 -11.69 14.64 5.26 0.08 -11.61 16 7 N -0.60 -10.55 2.98 -174.02 -0.52 -11.07 16 8 C 0.08 1.16 5.62 -3.67 -0.02 1.14 16 9 C -0.12 -1.84 5.82 -26.64 -0.16 -2.00 16 10 C 0.08 1.47 2.47 -26.63 -0.07 1.40 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 12 O -0.39 -7.99 10.49 -35.23 -0.37 -8.36 16 13 C 0.04 0.79 6.96 37.26 0.26 1.05 16 14 C 0.14 3.48 5.44 -3.49 -0.02 3.46 16 15 N -0.59 -15.07 3.04 -164.38 -0.50 -15.57 16 16 C -0.25 -6.99 8.90 -15.06 -0.13 -7.12 16 17 H 0.07 1.94 6.25 -52.48 -0.33 1.61 16 18 C 0.00 0.13 4.99 -17.43 -0.09 0.04 16 19 N -0.90 -26.33 11.10 55.49 0.62 -25.71 16 20 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 3.07 3.02 -67.53 -0.20 2.87 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 C 0.13 2.62 4.47 -3.71 -0.02 2.60 16 27 C -0.18 -1.99 8.74 -37.50 -0.33 -2.32 16 28 C -0.02 -0.16 11.34 -16.82 -0.19 -0.35 16 29 N -0.45 -4.25 3.09 -119.88 -0.37 -4.62 16 30 C 0.07 0.36 10.61 59.85 0.63 1.00 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.45 8.13 -51.93 -0.42 0.02 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.59 6.41 -51.93 -0.33 1.26 16 35 H 0.07 0.60 7.58 -51.93 -0.39 0.21 16 36 H 0.12 1.36 3.13 -51.93 -0.16 1.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 2.55 6.15 -51.93 -0.32 2.23 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.10 2.40 6.82 -51.93 -0.35 2.04 16 46 H 0.07 1.46 7.38 -51.93 -0.38 1.08 16 47 H 0.16 1.46 6.13 -52.48 -0.32 1.13 16 48 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 51 H 0.08 0.40 7.47 -51.93 -0.39 0.01 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -34.11 389.13 -9.58 -43.69 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.03 Total: 3.31 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.32 Total: 7.12 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.77 Total: -56.97 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.29 Total: -19.98 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.11 -9.58 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074339648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.050 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds