Wall clock time and date at job start Wed Apr 1 2020 04:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47123 * 2 1 4 4 C 1.36776 * 125.80387 * 269.99859 * 3 2 1 5 5 C 1.47261 * 126.93726 * 0.02562 * 4 3 2 6 6 O 1.21624 * 120.00224 * 330.66020 * 5 4 3 7 7 N 1.34780 * 119.99851 * 150.65408 * 5 4 3 8 8 C 1.46835 * 120.40845 * 4.55539 * 7 5 4 9 9 C 1.53371 * 109.25120 * 232.27451 * 8 7 5 10 10 C 1.52795 * 108.81166 * 306.16655 * 9 8 7 11 11 H 1.08997 * 108.95980 * 303.06636 * 10 9 8 12 12 O 1.42604 * 111.10864 * 182.53031 * 10 9 8 13 13 C 1.43146 * 113.63393 * 176.39046 * 12 10 9 14 14 C 1.53193 * 109.69706 * 61.70710 * 13 12 10 15 15 N 1.47326 * 108.81260 * 308.71142 * 14 13 12 16 16 C 1.36942 * 121.34690 * 230.30335 * 15 14 13 17 17 H 1.08003 * 120.00029 * 153.72640 * 16 15 14 18 18 C 1.38811 * 119.99738 * 333.72666 * 16 15 14 19 19 N 1.31610 * 120.00534 * 344.15756 * 18 16 15 20 20 Si 1.86804 * 119.99495 * 164.15785 * 18 16 15 21 21 H 1.48500 * 109.47196 * 90.00172 * 20 18 16 22 22 H 1.48497 * 109.47092 * 209.99892 * 20 18 16 23 23 H 1.48504 * 109.47085 * 329.99876 * 20 18 16 24 24 C 1.46875 * 117.34884 * 50.32933 * 15 14 13 25 25 H 1.09003 * 109.65385 * 67.61236 * 24 15 14 26 26 C 1.47133 * 120.41115 * 184.58198 * 7 5 4 27 27 C 1.46677 * 106.11662 * 180.28189 * 4 3 2 28 28 C 1.34484 * 106.33628 * 359.56974 * 27 4 3 29 29 N 1.34663 * 125.80353 * 90.02521 * 3 2 1 30 30 C 1.46500 * 124.84815 * 359.97438 * 29 3 2 31 31 H 1.09001 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47005 * 300.00110 * 1 2 3 33 33 H 1.08993 * 109.46838 * 60.00249 * 1 2 3 34 34 H 1.08999 * 109.47342 * 239.99523 * 2 1 3 35 35 H 1.09000 * 109.47118 * 120.00010 * 2 1 3 36 36 H 1.09002 * 109.51092 * 352.20520 * 8 7 5 37 37 H 1.09000 * 109.50876 * 112.34412 * 8 7 5 38 38 H 1.09000 * 109.58252 * 186.36887 * 9 8 7 39 39 H 1.08996 * 109.57713 * 65.96177 * 9 8 7 40 40 H 1.08991 * 109.42649 * 181.76986 * 13 12 10 41 41 H 1.09001 * 109.42258 * 301.65246 * 13 12 10 42 42 H 1.09000 * 109.58052 * 68.56765 * 14 13 12 43 43 H 1.09002 * 109.57783 * 188.97534 * 14 13 12 44 44 H 0.97003 * 120.00245 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.72094 * 7.07734 * 26 7 5 46 46 H 1.09004 * 109.75874 * 246.43488 * 26 7 5 47 47 H 1.08009 * 126.83348 * 179.73964 * 27 4 3 48 48 H 1.07998 * 125.57827 * 180.14621 * 28 27 4 49 49 H 1.08995 * 109.46971 * 90.00499 * 30 29 3 50 50 H 1.09004 * 109.47098 * 210.00129 * 30 29 3 51 51 H 1.08997 * 109.47474 * 330.00178 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2991 2.1751 -1.1093 5 6 2.1530 1.7634 -2.5156 6 8 2.2867 0.5945 -2.8241 7 7 1.8710 2.6818 -3.4609 8 6 1.8061 4.1076 -3.1159 9 6 0.4749 4.6873 -3.6100 10 6 0.3252 4.3781 -5.0988 11 1 1.1831 4.7862 -5.6332 12 8 -0.8725 4.9470 -5.6237 13 6 -1.0265 4.7598 -7.0344 14 6 -1.0993 3.2628 -7.3517 15 7 0.0448 2.5863 -6.7161 16 6 0.8541 1.7383 -7.4242 17 1 1.8785 1.5876 -7.1171 18 6 0.3577 1.0725 -8.5365 19 7 -0.9413 1.0007 -8.7351 20 14 1.5337 0.2785 -9.7514 21 1 1.7989 -1.1234 -9.3396 22 1 0.9272 0.2898 -11.1069 23 1 2.8097 1.0378 -9.7737 24 6 0.2828 2.8570 -5.2923 25 1 -0.5275 2.4342 -4.6983 26 6 1.6240 2.2682 -4.8510 27 6 2.7660 3.4749 -0.6152 28 6 2.7340 3.4029 0.7274 29 7 2.2954 2.1633 1.0922 30 6 2.1337 1.7057 2.4744 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.8745 4.2239 -2.0342 37 1 2.6321 4.6354 -3.5924 38 1 0.4678 5.7667 -3.4585 39 1 -0.3483 4.2335 -3.0582 40 1 -1.9437 5.2458 -7.3666 41 1 -0.1748 5.1994 -7.5535 42 1 -2.0304 2.8516 -6.9619 43 1 -1.0560 3.1156 -8.4309 44 1 -1.2882 0.5357 -9.5126 45 1 1.5856 1.1804 -4.9098 46 1 2.4200 2.6434 -5.4942 47 1 3.0718 4.3223 -1.2110 48 1 3.0144 4.1948 1.4060 49 1 3.0623 1.2494 2.8170 50 1 1.8894 2.5553 3.1122 51 1 1.3290 0.9721 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074339648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:35 Heat of formation + Delta-G solvation = -6.823682 kcal Electronic energy + Delta-G solvation = -32543.381056 eV Core-core repulsion = 28444.238379 eV Total energy + Delta-G solvation = -4099.142677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45042 -41.15287 -39.75470 -37.40072 -36.56147 -34.65670 -34.05868 -33.23704 -32.85230 -31.40382 -29.38661 -29.01778 -27.65703 -26.54175 -25.56201 -24.50048 -23.70136 -23.16887 -22.03076 -21.45484 -20.99893 -19.23772 -18.67026 -18.13699 -17.53481 -17.13046 -16.86457 -16.66482 -16.36033 -16.19715 -16.06426 -15.59663 -15.49986 -15.12277 -14.92118 -14.79361 -14.69471 -14.46465 -14.43656 -13.85121 -13.77978 -13.58862 -13.30472 -13.20955 -13.06441 -12.98086 -12.82973 -12.75662 -12.53420 -12.38292 -12.30406 -12.22524 -12.03065 -11.93781 -11.90325 -11.60998 -11.24402 -10.81045 -10.76428 -10.52751 -9.69341 -9.39493 -9.05142 -8.76854 -7.92684 -5.40320 0.82208 1.43178 1.44431 1.54071 1.55398 1.82700 2.18089 2.43188 2.48158 2.85279 3.22119 3.45048 3.69392 3.73989 3.94191 3.98000 4.01339 4.10009 4.10973 4.17593 4.24523 4.32653 4.35441 4.41286 4.49750 4.51709 4.55472 4.57769 4.59136 4.64369 4.71753 4.76003 4.83301 4.84862 4.87081 4.98725 5.02450 5.06795 5.09990 5.13419 5.23004 5.29859 5.31603 5.48494 5.54383 5.62892 5.81903 6.14790 6.24096 6.32915 6.42578 6.56937 7.03319 7.29208 7.70772 8.25939 9.13633 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003346 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.706150 B = 8366.097013 C = 9386.683039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C 0.092 3.908 4 C -0.259 4.259 5 C 0.581 3.419 6 O -0.597 6.597 7 N -0.605 5.605 8 C 0.084 3.916 9 C -0.113 4.113 10 C 0.082 3.918 11 H 0.056 0.944 12 O -0.392 6.392 13 C 0.051 3.949 14 C 0.146 3.854 15 N -0.606 5.606 16 C -0.262 4.262 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.137 3.863 25 H 0.000 1.000 26 C 0.142 3.858 27 C -0.195 4.195 28 C 0.004 3.996 29 N -0.439 5.439 30 C 0.058 3.942 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.050 0.950 42 H -0.005 1.005 43 H 0.073 0.927 44 H 0.252 0.748 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.175 0.825 48 H 0.211 0.789 49 H 0.087 0.913 50 H 0.114 0.886 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 9.856 25.142 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C -0.026 4.026 4 C -0.269 4.269 5 C 0.373 3.627 6 O -0.480 6.480 7 N -0.337 5.337 8 C -0.036 4.036 9 C -0.152 4.152 10 C 0.023 3.977 11 H 0.074 0.926 12 O -0.311 6.311 13 C -0.026 4.026 14 C 0.020 3.980 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.090 0.910 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.217 1.217 22 H -0.212 1.212 23 H -0.191 1.191 24 C 0.030 3.970 25 H 0.018 0.982 26 C 0.018 3.982 27 C -0.218 4.218 28 C -0.123 4.123 29 N -0.114 5.114 30 C -0.082 4.082 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.192 0.808 48 H 0.228 0.772 49 H 0.106 0.894 50 H 0.132 0.868 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.487 9.198 25.319 27.708 hybrid contribution 0.097 -1.309 -1.807 2.233 sum 6.585 7.889 23.512 25.660 Atomic orbital electron populations 1.21642 0.93950 1.02524 1.01330 1.20277 0.96590 0.89654 1.04047 1.20234 1.01882 0.94575 0.85914 1.20047 1.18211 0.98498 0.90184 1.18102 0.74871 0.84141 0.85547 1.90697 1.54081 1.20059 1.83154 1.48081 1.69256 1.08576 1.07803 1.22851 0.96868 0.78400 1.05499 1.21885 0.98244 1.03412 0.91630 1.22502 0.87266 0.91839 0.96124 0.92577 1.87746 1.42491 1.77552 1.23328 1.23188 1.01927 0.96447 0.81049 1.21326 0.87986 0.89897 0.98749 1.44354 1.33020 1.51382 1.04322 1.19452 0.92649 1.18887 1.08178 0.90963 1.25810 0.97013 0.99003 1.02549 1.70175 1.12185 1.46336 1.29421 0.85283 0.78800 0.78172 0.78275 1.21673 1.21241 1.19125 1.21396 0.94478 0.95409 0.85755 0.98210 1.21214 0.95951 0.99626 0.81363 1.22406 1.08587 0.96203 0.94605 1.22383 1.05298 0.88524 0.96052 1.43794 1.49447 1.11386 1.06744 1.22447 1.04350 1.03409 0.77995 0.91021 0.90879 0.95569 0.91184 0.88346 0.83599 0.89489 0.86756 0.92217 0.87170 0.93137 0.98707 0.90848 0.93921 0.92434 0.91324 0.80776 0.77239 0.89415 0.86789 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.90 71.98 0.71 -2.37 16 2 C -0.07 -1.60 5.61 29.85 0.17 -1.44 16 3 C 0.09 2.22 6.14 41.78 0.26 2.48 16 4 C -0.26 -7.45 5.83 -19.04 -0.11 -7.56 16 5 C 0.58 22.18 7.56 86.61 0.65 22.83 16 6 O -0.60 -27.92 14.64 -4.11 -0.06 -27.98 16 7 N -0.61 -21.83 2.98 -822.72 -2.45 -24.28 16 8 C 0.08 2.14 5.62 86.44 0.49 2.63 16 9 C -0.11 -3.16 5.82 30.65 0.18 -2.98 16 10 C 0.08 3.08 2.47 30.66 0.08 3.16 16 11 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 12 O -0.39 -15.63 10.49 -148.98 -1.56 -17.20 16 13 C 0.05 2.07 6.96 72.05 0.50 2.57 16 14 C 0.15 7.48 5.44 86.29 0.47 7.94 16 15 N -0.61 -32.60 3.04 -673.98 -2.05 -34.65 16 16 C -0.26 -15.06 8.90 84.03 0.75 -14.32 16 17 H 0.07 4.07 6.25 -2.91 -0.02 4.05 16 18 C -0.05 -2.81 4.99 84.86 0.42 -2.38 16 19 N -0.94 -57.16 11.10 21.65 0.24 -56.92 16 20 Si 0.97 46.73 29.58 68.60 2.03 48.76 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.14 6.41 3.02 45.05 0.14 6.54 16 25 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 26 C 0.14 6.29 4.47 86.25 0.39 6.68 16 27 C -0.20 -3.74 8.74 23.62 0.21 -3.54 16 28 C 0.00 0.06 11.34 83.12 0.94 1.00 16 29 N -0.44 -6.75 3.09 -533.20 -1.65 -8.39 16 30 C 0.06 0.35 10.61 127.77 1.36 1.70 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 2.23 6.41 -2.39 -0.02 2.22 16 35 H 0.10 1.63 7.58 -2.39 -0.02 1.62 16 36 H 0.15 2.95 3.13 -2.39 -0.01 2.94 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.07 4.08 6.15 -2.39 -0.01 4.06 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.06 3.02 6.82 -2.39 -0.02 3.00 16 46 H 0.07 3.01 7.38 -2.39 -0.02 2.99 16 47 H 0.18 2.53 6.13 -2.91 -0.02 2.52 16 48 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.11 0.09 8.13 -2.38 -0.02 0.07 16 51 H 0.09 0.48 7.47 -2.39 -0.02 0.46 16 Total: -1.00 -82.53 389.13 3.01 -79.52 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.93 Total: 18.19 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 7.59 Total: 22.94 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -5.91 Total: -124.24 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.62 Total: -45.17 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -82.53 3.01 -79.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074339648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.694 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds