Wall clock time and date at job start Wed Apr 1 2020 04:28:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50695 * 109.47123 * 2 1
4 4 C 1.36776 * 125.80387 * 269.99859 * 3 2 1
5 5 C 1.47261 * 126.93726 * 0.02562 * 4 3 2
6 6 O 1.21624 * 120.00224 * 330.66020 * 5 4 3
7 7 N 1.34780 * 119.99851 * 150.65408 * 5 4 3
8 8 C 1.46835 * 120.40845 * 4.55539 * 7 5 4
9 9 C 1.53371 * 109.25120 * 232.27451 * 8 7 5
10 10 C 1.52795 * 108.81166 * 306.16655 * 9 8 7
11 11 H 1.08997 * 108.95980 * 303.06636 * 10 9 8
12 12 O 1.42604 * 111.10864 * 182.53031 * 10 9 8
13 13 C 1.43146 * 113.63393 * 176.39046 * 12 10 9
14 14 C 1.53193 * 109.69706 * 61.70710 * 13 12 10
15 15 N 1.47326 * 108.81260 * 308.71142 * 14 13 12
16 16 C 1.36942 * 121.34690 * 230.30335 * 15 14 13
17 17 H 1.08003 * 120.00029 * 153.72640 * 16 15 14
18 18 C 1.38811 * 119.99738 * 333.72666 * 16 15 14
19 19 N 1.31610 * 120.00534 * 344.15756 * 18 16 15
20 20 Si 1.86804 * 119.99495 * 164.15785 * 18 16 15
21 21 H 1.48500 * 109.47196 * 90.00172 * 20 18 16
22 22 H 1.48497 * 109.47092 * 209.99892 * 20 18 16
23 23 H 1.48504 * 109.47085 * 329.99876 * 20 18 16
24 24 C 1.46875 * 117.34884 * 50.32933 * 15 14 13
25 25 H 1.09003 * 109.65385 * 67.61236 * 24 15 14
26 26 C 1.47133 * 120.41115 * 184.58198 * 7 5 4
27 27 C 1.46677 * 106.11662 * 180.28189 * 4 3 2
28 28 C 1.34484 * 106.33628 * 359.56974 * 27 4 3
29 29 N 1.34663 * 125.80353 * 90.02521 * 3 2 1
30 30 C 1.46500 * 124.84815 * 359.97438 * 29 3 2
31 31 H 1.09001 * 109.46650 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47005 * 300.00110 * 1 2 3
33 33 H 1.08993 * 109.46838 * 60.00249 * 1 2 3
34 34 H 1.08999 * 109.47342 * 239.99523 * 2 1 3
35 35 H 1.09000 * 109.47118 * 120.00010 * 2 1 3
36 36 H 1.09002 * 109.51092 * 352.20520 * 8 7 5
37 37 H 1.09000 * 109.50876 * 112.34412 * 8 7 5
38 38 H 1.09000 * 109.58252 * 186.36887 * 9 8 7
39 39 H 1.08996 * 109.57713 * 65.96177 * 9 8 7
40 40 H 1.08991 * 109.42649 * 181.76986 * 13 12 10
41 41 H 1.09001 * 109.42258 * 301.65246 * 13 12 10
42 42 H 1.09000 * 109.58052 * 68.56765 * 14 13 12
43 43 H 1.09002 * 109.57783 * 188.97534 * 14 13 12
44 44 H 0.97003 * 120.00245 * 179.97438 * 19 18 16
45 45 H 1.09001 * 109.72094 * 7.07734 * 26 7 5
46 46 H 1.09004 * 109.75874 * 246.43488 * 26 7 5
47 47 H 1.08009 * 126.83348 * 179.73964 * 27 4 3
48 48 H 1.07998 * 125.57827 * 180.14621 * 28 27 4
49 49 H 1.08995 * 109.46971 * 90.00499 * 30 29 3
50 50 H 1.09004 * 109.47098 * 210.00129 * 30 29 3
51 51 H 1.08997 * 109.47474 * 330.00178 * 30 29 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2991 2.1751 -1.1093
5 6 2.1530 1.7634 -2.5156
6 8 2.2867 0.5945 -2.8241
7 7 1.8710 2.6818 -3.4609
8 6 1.8061 4.1076 -3.1159
9 6 0.4749 4.6873 -3.6100
10 6 0.3252 4.3781 -5.0988
11 1 1.1831 4.7862 -5.6332
12 8 -0.8725 4.9470 -5.6237
13 6 -1.0265 4.7598 -7.0344
14 6 -1.0993 3.2628 -7.3517
15 7 0.0448 2.5863 -6.7161
16 6 0.8541 1.7383 -7.4242
17 1 1.8785 1.5876 -7.1171
18 6 0.3577 1.0725 -8.5365
19 7 -0.9413 1.0007 -8.7351
20 14 1.5337 0.2785 -9.7514
21 1 1.7989 -1.1234 -9.3396
22 1 0.9272 0.2898 -11.1069
23 1 2.8097 1.0378 -9.7737
24 6 0.2828 2.8570 -5.2923
25 1 -0.5275 2.4342 -4.6983
26 6 1.6240 2.2682 -4.8510
27 6 2.7660 3.4749 -0.6152
28 6 2.7340 3.4029 0.7274
29 7 2.2954 2.1633 1.0922
30 6 2.1337 1.7057 2.4744
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.8934 -0.5138 0.8900
36 1 1.8745 4.2239 -2.0342
37 1 2.6321 4.6354 -3.5924
38 1 0.4678 5.7667 -3.4585
39 1 -0.3483 4.2335 -3.0582
40 1 -1.9437 5.2458 -7.3666
41 1 -0.1748 5.1994 -7.5535
42 1 -2.0304 2.8516 -6.9619
43 1 -1.0560 3.1156 -8.4309
44 1 -1.2882 0.5357 -9.5126
45 1 1.5856 1.1804 -4.9098
46 1 2.4200 2.6434 -5.4942
47 1 3.0718 4.3223 -1.2110
48 1 3.0144 4.1948 1.4060
49 1 3.0623 1.2494 2.8170
50 1 1.8894 2.5553 3.1122
51 1 1.3290 0.9721 2.5225
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074339648.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:35
Heat of formation + Delta-G solvation = -6.823682 kcal
Electronic energy + Delta-G solvation = -32543.381056 eV
Core-core repulsion = 28444.238379 eV
Total energy + Delta-G solvation = -4099.142677 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.45042 -41.15287 -39.75470 -37.40072 -36.56147 -34.65670 -34.05868 -33.23704
-32.85230 -31.40382 -29.38661 -29.01778 -27.65703 -26.54175 -25.56201 -24.50048
-23.70136 -23.16887 -22.03076 -21.45484 -20.99893 -19.23772 -18.67026 -18.13699
-17.53481 -17.13046 -16.86457 -16.66482 -16.36033 -16.19715 -16.06426 -15.59663
-15.49986 -15.12277 -14.92118 -14.79361 -14.69471 -14.46465 -14.43656 -13.85121
-13.77978 -13.58862 -13.30472 -13.20955 -13.06441 -12.98086 -12.82973 -12.75662
-12.53420 -12.38292 -12.30406 -12.22524 -12.03065 -11.93781 -11.90325 -11.60998
-11.24402 -10.81045 -10.76428 -10.52751 -9.69341 -9.39493 -9.05142 -8.76854
-7.92684 -5.40320 0.82208 1.43178 1.44431 1.54071 1.55398 1.82700
2.18089 2.43188 2.48158 2.85279 3.22119 3.45048 3.69392 3.73989
3.94191 3.98000 4.01339 4.10009 4.10973 4.17593 4.24523 4.32653
4.35441 4.41286 4.49750 4.51709 4.55472 4.57769 4.59136 4.64369
4.71753 4.76003 4.83301 4.84862 4.87081 4.98725 5.02450 5.06795
5.09990 5.13419 5.23004 5.29859 5.31603 5.48494 5.54383 5.62892
5.81903 6.14790 6.24096 6.32915 6.42578 6.56937 7.03319 7.29208
7.70772 8.25939 9.13633
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013840 B = 0.003346 C = 0.002982
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2022.706150 B = 8366.097013 C = 9386.683039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.068 4.068
3 C 0.092 3.908
4 C -0.259 4.259
5 C 0.581 3.419
6 O -0.597 6.597
7 N -0.605 5.605
8 C 0.084 3.916
9 C -0.113 4.113
10 C 0.082 3.918
11 H 0.056 0.944
12 O -0.392 6.392
13 C 0.051 3.949
14 C 0.146 3.854
15 N -0.606 5.606
16 C -0.262 4.262
17 H 0.073 0.927
18 C -0.048 4.048
19 N -0.935 5.935
20 Si 0.967 3.033
21 H -0.290 1.290
22 H -0.287 1.287
23 H -0.267 1.267
24 C 0.137 3.863
25 H 0.000 1.000
26 C 0.142 3.858
27 C -0.195 4.195
28 C 0.004 3.996
29 N -0.439 5.439
30 C 0.058 3.942
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.025 0.975
34 H 0.070 0.930
35 H 0.098 0.902
36 H 0.147 0.853
37 H 0.087 0.913
38 H 0.114 0.886
39 H 0.059 0.941
40 H 0.110 0.890
41 H 0.050 0.950
42 H -0.005 1.005
43 H 0.073 0.927
44 H 0.252 0.748
45 H 0.057 0.943
46 H 0.069 0.931
47 H 0.175 0.825
48 H 0.211 0.789
49 H 0.087 0.913
50 H 0.114 0.886
51 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.647 9.856 25.142 27.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.106 4.106
3 C -0.026 4.026
4 C -0.269 4.269
5 C 0.373 3.627
6 O -0.480 6.480
7 N -0.337 5.337
8 C -0.036 4.036
9 C -0.152 4.152
10 C 0.023 3.977
11 H 0.074 0.926
12 O -0.311 6.311
13 C -0.026 4.026
14 C 0.020 3.980
15 N -0.331 5.331
16 C -0.392 4.392
17 H 0.090 0.910
18 C -0.244 4.244
19 N -0.581 5.581
20 Si 0.795 3.205
21 H -0.217 1.217
22 H -0.212 1.212
23 H -0.191 1.191
24 C 0.030 3.970
25 H 0.018 0.982
26 C 0.018 3.982
27 C -0.218 4.218
28 C -0.123 4.123
29 N -0.114 5.114
30 C -0.082 4.082
31 H 0.090 0.910
32 H 0.091 0.909
33 H 0.044 0.956
34 H 0.088 0.912
35 H 0.117 0.883
36 H 0.164 0.836
37 H 0.105 0.895
38 H 0.132 0.868
39 H 0.078 0.922
40 H 0.128 0.872
41 H 0.069 0.931
42 H 0.013 0.987
43 H 0.092 0.908
44 H 0.061 0.939
45 H 0.076 0.924
46 H 0.087 0.913
47 H 0.192 0.808
48 H 0.228 0.772
49 H 0.106 0.894
50 H 0.132 0.868
51 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 6.487 9.198 25.319 27.708
hybrid contribution 0.097 -1.309 -1.807 2.233
sum 6.585 7.889 23.512 25.660
Atomic orbital electron populations
1.21642 0.93950 1.02524 1.01330 1.20277 0.96590 0.89654 1.04047
1.20234 1.01882 0.94575 0.85914 1.20047 1.18211 0.98498 0.90184
1.18102 0.74871 0.84141 0.85547 1.90697 1.54081 1.20059 1.83154
1.48081 1.69256 1.08576 1.07803 1.22851 0.96868 0.78400 1.05499
1.21885 0.98244 1.03412 0.91630 1.22502 0.87266 0.91839 0.96124
0.92577 1.87746 1.42491 1.77552 1.23328 1.23188 1.01927 0.96447
0.81049 1.21326 0.87986 0.89897 0.98749 1.44354 1.33020 1.51382
1.04322 1.19452 0.92649 1.18887 1.08178 0.90963 1.25810 0.97013
0.99003 1.02549 1.70175 1.12185 1.46336 1.29421 0.85283 0.78800
0.78172 0.78275 1.21673 1.21241 1.19125 1.21396 0.94478 0.95409
0.85755 0.98210 1.21214 0.95951 0.99626 0.81363 1.22406 1.08587
0.96203 0.94605 1.22383 1.05298 0.88524 0.96052 1.43794 1.49447
1.11386 1.06744 1.22447 1.04350 1.03409 0.77995 0.91021 0.90879
0.95569 0.91184 0.88346 0.83599 0.89489 0.86756 0.92217 0.87170
0.93137 0.98707 0.90848 0.93921 0.92434 0.91324 0.80776 0.77239
0.89415 0.86789 0.89172
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.08 9.90 71.98 0.71 -2.37 16
2 C -0.07 -1.60 5.61 29.85 0.17 -1.44 16
3 C 0.09 2.22 6.14 41.78 0.26 2.48 16
4 C -0.26 -7.45 5.83 -19.04 -0.11 -7.56 16
5 C 0.58 22.18 7.56 86.61 0.65 22.83 16
6 O -0.60 -27.92 14.64 -4.11 -0.06 -27.98 16
7 N -0.61 -21.83 2.98 -822.72 -2.45 -24.28 16
8 C 0.08 2.14 5.62 86.44 0.49 2.63 16
9 C -0.11 -3.16 5.82 30.65 0.18 -2.98 16
10 C 0.08 3.08 2.47 30.66 0.08 3.16 16
11 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
12 O -0.39 -15.63 10.49 -148.98 -1.56 -17.20 16
13 C 0.05 2.07 6.96 72.05 0.50 2.57 16
14 C 0.15 7.48 5.44 86.29 0.47 7.94 16
15 N -0.61 -32.60 3.04 -673.98 -2.05 -34.65 16
16 C -0.26 -15.06 8.90 84.03 0.75 -14.32 16
17 H 0.07 4.07 6.25 -2.91 -0.02 4.05 16
18 C -0.05 -2.81 4.99 84.86 0.42 -2.38 16
19 N -0.94 -57.16 11.10 21.65 0.24 -56.92 16
20 Si 0.97 46.73 29.58 68.60 2.03 48.76 16
21 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16
22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16
23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
24 C 0.14 6.41 3.02 45.05 0.14 6.54 16
25 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
26 C 0.14 6.29 4.47 86.25 0.39 6.68 16
27 C -0.20 -3.74 8.74 23.62 0.21 -3.54 16
28 C 0.00 0.06 11.34 83.12 0.94 1.00 16
29 N -0.44 -6.75 3.09 -533.20 -1.65 -8.39 16
30 C 0.06 0.35 10.61 127.77 1.36 1.70 16
31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16
33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
34 H 0.07 2.23 6.41 -2.39 -0.02 2.22 16
35 H 0.10 1.63 7.58 -2.39 -0.02 1.62 16
36 H 0.15 2.95 3.13 -2.39 -0.01 2.94 16
37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
38 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16
39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
40 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16
41 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16
42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
43 H 0.07 4.08 6.15 -2.39 -0.01 4.06 16
44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
45 H 0.06 3.02 6.82 -2.39 -0.02 3.00 16
46 H 0.07 3.01 7.38 -2.39 -0.02 2.99 16
47 H 0.18 2.53 6.13 -2.91 -0.02 2.52 16
48 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16
49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16
50 H 0.11 0.09 8.13 -2.38 -0.02 0.07 16
51 H 0.09 0.48 7.47 -2.39 -0.02 0.46 16
Total: -1.00 -82.53 389.13 3.01 -79.52
By element:
Atomic # 1 Polarization: 17.26 SS G_CDS: 0.93 Total: 18.19 kcal
Atomic # 6 Polarization: 15.36 SS G_CDS: 7.59 Total: 22.94 kcal
Atomic # 7 Polarization: -118.33 SS G_CDS: -5.91 Total: -124.24 kcal
Atomic # 8 Polarization: -43.55 SS G_CDS: -1.62 Total: -45.17 kcal
Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal
Total: -82.53 3.01 -79.52 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074339648.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.694 kcal
(2) G-P(sol) polarization free energy of solvation -82.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds