Wall clock time and date at job start Wed Apr 1 2020 04:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46917 * 2 1 4 4 C 1.36768 * 125.80268 * 269.99991 * 3 2 1 5 5 C 1.47265 * 126.94108 * 359.97438 * 4 3 2 6 6 O 1.21632 * 119.99811 * 318.90832 * 5 4 3 7 7 N 1.34774 * 120.00443 * 138.90987 * 5 4 3 8 8 C 1.46990 * 120.71638 * 354.58405 * 7 5 4 9 9 C 1.53162 * 108.43968 * 234.57162 * 8 7 5 10 10 C 1.52510 * 109.79286 * 305.46926 * 9 8 7 11 11 H 1.08999 * 108.93263 * 179.01362 * 10 9 8 12 12 O 1.42700 * 110.61677 * 298.71152 * 10 9 8 13 13 C 1.43074 * 113.87253 * 185.35106 * 12 10 9 14 14 C 1.53231 * 109.44373 * 298.34463 * 13 12 10 15 15 N 1.47175 * 108.69034 * 51.59250 * 14 13 12 16 16 C 1.36938 * 121.22305 * 129.02941 * 15 14 13 17 17 H 1.07999 * 120.00025 * 206.17925 * 16 15 14 18 18 C 1.38818 * 120.00063 * 26.17197 * 16 15 14 19 19 N 1.31621 * 119.99535 * 17.92743 * 18 16 15 20 20 Si 1.86799 * 120.00257 * 197.92449 * 18 16 15 21 21 H 1.48501 * 109.47075 * 94.98347 * 20 18 16 22 22 H 1.48499 * 109.47135 * 214.98665 * 20 18 16 23 23 H 1.48506 * 109.46968 * 334.98557 * 20 18 16 24 24 C 1.47584 * 117.55443 * 309.04603 * 15 14 13 25 25 H 1.09002 * 111.16956 * 172.80768 * 24 15 14 26 26 C 1.46784 * 120.72617 * 174.60886 * 7 5 4 27 27 C 1.46689 * 106.11974 * 179.72458 * 4 3 2 28 28 C 1.34485 * 106.32632 * 0.23833 * 27 4 3 29 29 N 1.34663 * 125.80208 * 90.13496 * 3 2 1 30 30 C 1.46495 * 124.85270 * 0.02562 * 29 3 2 31 31 H 1.09008 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47189 * 299.99841 * 1 2 3 33 33 H 1.09000 * 109.47369 * 59.99815 * 1 2 3 34 34 H 1.09001 * 109.47189 * 240.00158 * 2 1 3 35 35 H 1.09000 * 109.47369 * 120.00185 * 2 1 3 36 36 H 1.09003 * 109.64181 * 114.88816 * 8 7 5 37 37 H 1.08999 * 109.64800 * 354.25811 * 8 7 5 38 38 H 1.08995 * 109.41673 * 185.36735 * 9 8 7 39 39 H 1.08995 * 109.41399 * 65.56444 * 9 8 7 40 40 H 1.09003 * 109.48069 * 58.33768 * 13 12 10 41 41 H 1.08999 * 109.47161 * 178.35665 * 13 12 10 42 42 H 1.08995 * 109.59956 * 291.83616 * 14 13 12 43 43 H 1.08998 * 109.59910 * 171.35660 * 14 13 12 44 44 H 0.97008 * 119.99472 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.52122 * 245.59477 * 26 7 5 46 46 H 1.09004 * 109.51988 * 5.77875 * 26 7 5 47 47 H 1.07996 * 126.83586 * 180.26634 * 27 4 3 48 48 H 1.08010 * 125.56849 * 179.97438 * 28 27 4 49 49 H 1.09002 * 109.47039 * 270.28850 * 30 29 3 50 50 H 1.09002 * 109.46652 * 30.28356 * 30 29 3 51 51 H 1.08997 * 109.47290 * 150.28662 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1538 1.7631 -2.5156 6 8 2.4943 0.6475 -2.8607 7 7 1.6439 2.6220 -3.4204 8 6 1.1184 3.9293 -3.0015 9 6 -0.3190 4.0605 -3.5141 10 6 -0.3536 3.8247 -5.0205 11 1 -1.3839 3.9038 -5.3673 12 8 0.4394 4.7974 -5.6997 13 6 0.3599 4.7158 -7.1259 14 6 0.8805 3.3509 -7.5885 15 7 0.1869 2.2990 -6.8279 16 6 -0.4150 1.2446 -7.4613 17 1 -1.2428 0.7339 -6.9920 18 6 0.0389 0.8322 -8.7067 19 7 1.2334 1.1941 -9.1246 20 14 -1.0455 -0.2362 -9.7892 21 1 -1.7953 0.6232 -10.7403 22 1 -0.1992 -1.1923 -10.5474 23 1 -2.0041 -0.9887 -8.9405 24 6 0.1635 2.4226 -5.3574 25 1 -0.4789 1.6648 -4.9089 26 6 1.6007 2.2722 -4.8453 27 6 2.7529 3.4796 -0.6152 28 6 2.7285 3.4048 0.7274 29 7 2.2973 2.1627 1.0922 30 6 2.1391 1.7039 2.4744 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.7324 4.7239 -3.4254 37 1 1.1269 3.9963 -1.9136 38 1 -0.6918 5.0610 -3.2953 39 1 -0.9495 3.3231 -3.0174 40 1 -0.6772 4.8345 -7.4395 41 1 0.9665 5.5054 -7.5694 42 1 1.9531 3.2874 -7.4055 43 1 0.6806 3.2248 -8.6526 44 1 1.5507 0.9056 -9.9948 45 1 2.2580 2.9385 -5.4040 46 1 1.9283 1.2410 -4.9772 47 1 3.0476 4.3308 -1.2110 48 1 3.0054 4.1981 1.4060 49 1 1.1292 1.9277 2.8182 50 1 2.3090 0.6282 2.5218 51 1 2.8613 2.2143 3.1116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074339650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:43 Heat of formation + Delta-G solvation = -17.450455 kcal Electronic energy + Delta-G solvation = -32657.887257 eV Core-core repulsion = 28558.283768 eV Total energy + Delta-G solvation = -4099.603489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38834 -41.20692 -39.69210 -37.08200 -36.44240 -34.61961 -33.94923 -33.29971 -32.92166 -31.06374 -29.51874 -29.09024 -27.61520 -26.15645 -25.59402 -24.54559 -24.21664 -23.05878 -22.45192 -21.06410 -20.12040 -19.19777 -18.87237 -18.14177 -17.37839 -17.09854 -16.94234 -16.68340 -16.42119 -16.17944 -16.08857 -15.60892 -15.48593 -15.02804 -14.88094 -14.84341 -14.44612 -14.34959 -14.08060 -13.90272 -13.79247 -13.59407 -13.34300 -13.25908 -13.08932 -12.97386 -12.87654 -12.74933 -12.59954 -12.41018 -12.29278 -12.24396 -12.09156 -11.89668 -11.84926 -11.62568 -11.20683 -10.85585 -10.76180 -10.50915 -9.68181 -9.36022 -9.05751 -8.71302 -7.93436 -5.40234 0.89898 1.43571 1.44138 1.54340 1.58113 1.87633 2.20594 2.39152 2.48304 2.89612 3.20484 3.45728 3.70650 3.75506 3.96059 4.02730 4.04715 4.10493 4.17584 4.21122 4.27334 4.33828 4.37320 4.46564 4.50248 4.53290 4.59208 4.61964 4.64509 4.69332 4.77881 4.84202 4.87638 4.88593 4.91912 4.97847 5.03055 5.06042 5.12742 5.21430 5.25855 5.30199 5.30630 5.51432 5.57727 5.63012 5.84461 6.17675 6.25543 6.35430 6.45037 6.62305 7.03337 7.31706 7.70193 8.25378 9.11789 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003238 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.611479 B = 8645.641981 C = 9631.545316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.090 3.910 4 C -0.256 4.256 5 C 0.581 3.419 6 O -0.603 6.603 7 N -0.600 5.600 8 C 0.113 3.887 9 C -0.114 4.114 10 C 0.088 3.912 11 H 0.050 0.950 12 O -0.381 6.381 13 C 0.052 3.948 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.268 4.268 17 H 0.065 0.935 18 C -0.046 4.046 19 N -0.931 5.931 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.134 3.866 25 H 0.058 0.942 26 C 0.126 3.874 27 C -0.187 4.187 28 C 0.003 3.997 29 N -0.439 5.439 30 C 0.059 3.941 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.000 1.000 43 H 0.067 0.933 44 H 0.252 0.748 45 H 0.048 0.952 46 H 0.039 0.961 47 H 0.153 0.847 48 H 0.208 0.792 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 8.802 26.338 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.028 4.028 4 C -0.266 4.266 5 C 0.373 3.627 6 O -0.486 6.486 7 N -0.331 5.331 8 C -0.009 4.009 9 C -0.152 4.152 10 C 0.028 3.972 11 H 0.068 0.932 12 O -0.300 6.300 13 C -0.026 4.026 14 C 0.020 3.980 15 N -0.325 5.325 16 C -0.397 4.397 17 H 0.083 0.917 18 C -0.242 4.242 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.195 1.195 24 C 0.026 3.974 25 H 0.077 0.923 26 C 0.001 3.999 27 C -0.210 4.210 28 C -0.124 4.124 29 N -0.114 5.114 30 C -0.081 4.081 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.171 0.829 48 H 0.225 0.775 49 H 0.109 0.891 50 H 0.108 0.892 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.237 8.237 26.450 27.730 hybrid contribution -0.070 -1.266 -1.887 2.273 sum -1.307 6.971 24.562 25.566 Atomic orbital electron populations 1.21645 0.93359 1.02642 1.01726 1.20265 0.97073 0.89425 1.03747 1.20194 1.02263 0.94590 0.85744 1.20010 1.18188 0.98240 0.90182 1.18170 0.75659 0.83186 0.85732 1.90706 1.53400 1.22848 1.81658 1.48106 1.60204 1.18530 1.06301 1.22034 0.93956 0.82898 1.01970 1.21829 0.97591 1.04627 0.91179 1.22227 0.93577 0.87476 0.93878 0.93154 1.87736 1.69559 1.54187 1.18554 1.23169 1.00638 0.97886 0.80870 1.21295 0.93082 0.86637 0.96983 1.44532 1.64097 1.24132 0.99740 1.19472 1.09415 1.09489 1.01353 0.91698 1.25820 0.96696 1.00452 1.01240 1.70205 1.17132 1.49997 1.20281 0.85198 0.78077 0.78111 0.78729 1.20562 1.22198 1.19509 1.21693 0.93998 0.96897 0.84827 0.92330 1.21697 0.99088 0.98907 0.80197 1.22152 1.08372 0.95862 0.94630 1.22249 1.05888 0.88482 0.95750 1.43740 1.49665 1.11175 1.06771 1.22434 1.05037 1.02679 0.77904 0.91011 0.90774 0.94871 0.91829 0.88366 0.90914 0.86398 0.87004 0.89867 0.93433 0.87226 0.98174 0.91463 0.93890 0.93371 0.94205 0.82942 0.77503 0.89093 0.89191 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.89 71.98 0.71 -2.03 16 2 C -0.07 -1.54 5.92 29.85 0.18 -1.36 16 3 C 0.09 2.17 6.14 41.78 0.26 2.43 16 4 C -0.26 -7.65 5.29 -19.04 -0.10 -7.75 16 5 C 0.58 23.04 7.43 86.62 0.64 23.68 16 6 O -0.60 -29.52 15.10 -4.13 -0.06 -29.58 16 7 N -0.60 -22.68 2.96 -822.96 -2.44 -25.12 16 8 C 0.11 3.15 5.46 86.34 0.47 3.62 16 9 C -0.11 -3.05 5.82 30.49 0.18 -2.87 16 10 C 0.09 3.17 2.72 30.49 0.08 3.25 16 11 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 12 O -0.38 -14.16 9.59 -148.98 -1.43 -15.59 16 13 C 0.05 2.02 6.97 72.06 0.50 2.52 16 14 C 0.15 7.24 4.94 86.33 0.43 7.67 16 15 N -0.60 -31.73 2.71 -672.38 -1.82 -33.55 16 16 C -0.27 -15.39 9.70 84.03 0.82 -14.57 16 17 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 18 C -0.05 -2.66 4.93 84.86 0.42 -2.24 16 19 N -0.93 -56.61 11.21 21.65 0.24 -56.37 16 20 Si 0.97 46.30 29.59 68.60 2.03 48.33 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.13 6.06 3.00 44.95 0.13 6.20 16 25 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16 26 C 0.13 5.89 5.63 86.43 0.49 6.38 16 27 C -0.19 -4.07 8.71 23.62 0.21 -3.86 16 28 C 0.00 0.05 11.34 83.12 0.94 0.99 16 29 N -0.44 -6.93 3.09 -533.20 -1.65 -8.58 16 30 C 0.06 0.36 10.81 127.77 1.38 1.74 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 2.00 6.72 -2.39 -0.02 1.99 16 35 H 0.10 1.58 6.92 -2.39 -0.02 1.57 16 36 H 0.07 2.02 7.94 -2.39 -0.02 2.00 16 37 H 0.12 2.72 4.77 -2.39 -0.01 2.71 16 38 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.00 0.01 7.17 -2.39 -0.02 -0.01 16 43 H 0.07 3.69 6.16 -2.39 -0.01 3.67 16 44 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 45 H 0.05 2.38 6.56 -2.38 -0.02 2.37 16 46 H 0.04 2.20 6.99 -2.39 -0.02 2.19 16 47 H 0.15 2.99 7.56 -2.91 -0.02 2.97 16 48 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 49 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.09 0.47 6.88 -2.39 -0.02 0.45 16 51 H 0.11 0.15 8.13 -2.39 -0.02 0.13 16 Total: -1.00 -80.83 391.64 3.54 -77.30 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.92 Total: 19.37 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 7.73 Total: 23.78 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.66 Total: -123.62 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.49 Total: -45.17 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -80.83 3.54 -77.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074339650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.845 kcal (2) G-P(sol) polarization free energy of solvation -80.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds