Wall clock time and date at job start Wed Apr 1 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46906 * 2 1 4 4 O 1.34261 * 126.52192 * 270.02542 * 3 2 1 5 5 C 1.34050 * 108.22154 * 179.97438 * 4 3 2 6 6 N 1.29939 * 109.24898 * 359.72430 * 5 4 3 7 7 C 1.36068 * 108.46986 * 0.43969 * 6 5 4 8 8 C 1.47424 * 126.44202 * 179.82272 * 7 6 5 9 9 O 1.21618 * 119.99681 * 179.68853 * 8 7 6 10 10 N 1.34767 * 120.00328 * 359.69429 * 8 7 6 11 11 C 1.47181 * 125.66446 * 359.97376 * 10 8 7 12 12 C 1.53696 * 107.11375 * 178.51394 * 11 10 8 13 13 C 1.54515 * 103.64327 * 338.45577 * 12 11 10 14 14 C 1.47482 * 125.66552 * 179.97438 * 10 8 7 15 15 H 1.08996 * 110.35612 * 85.02961 * 14 10 8 16 16 C 1.53007 * 110.35263 * 322.85214 * 14 10 8 17 17 C 1.52275 * 110.63771 * 96.56706 * 12 11 10 18 18 C 1.53307 * 109.42042 * 63.78274 * 17 12 11 19 19 N 1.46933 * 108.70925 * 53.50660 * 18 17 12 20 20 C 1.36931 * 120.56169 * 125.74418 * 19 18 17 21 21 H 1.08003 * 120.00277 * 331.46630 * 20 19 18 22 22 C 1.38817 * 120.00159 * 151.73551 * 20 19 18 23 23 N 1.31617 * 119.99622 * 343.10939 * 22 20 19 24 24 Si 1.86799 * 120.00257 * 163.09997 * 22 20 19 25 25 H 1.48503 * 109.46631 * 90.00237 * 24 22 20 26 26 H 1.48497 * 109.47403 * 210.00442 * 24 22 20 27 27 H 1.48502 * 109.47221 * 330.00747 * 24 22 20 28 28 C 1.46923 * 118.87376 * 306.01981 * 19 18 17 29 29 C 1.52275 * 110.62971 * 220.34781 * 12 11 10 30 30 H 1.08999 * 109.47535 * 60.00273 * 1 2 3 31 31 H 1.09006 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47252 * 299.99832 * 1 2 3 33 33 H 1.08990 * 109.47349 * 240.00217 * 2 1 3 34 34 H 1.08999 * 109.47535 * 119.99727 * 2 1 3 35 35 H 1.08008 * 125.37513 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.90803 * 59.14375 * 11 10 8 37 37 H 1.09000 * 110.05921 * 297.97315 * 11 10 8 38 38 H 1.09006 * 111.00959 * 152.88641 * 13 12 11 39 39 H 1.09001 * 111.01471 * 276.75296 * 13 12 11 40 40 H 1.09007 * 109.46849 * 61.45643 * 16 14 10 41 41 H 1.08993 * 109.47078 * 181.44800 * 16 14 10 42 42 H 1.08996 * 109.47294 * 301.45466 * 16 14 10 43 43 H 1.08994 * 109.48007 * 303.79421 * 17 12 11 44 44 H 1.09000 * 109.47658 * 183.76840 * 17 12 11 45 45 H 1.09005 * 109.59988 * 293.74166 * 18 17 12 46 46 H 1.09000 * 109.72999 * 173.35053 * 18 17 12 47 47 H 0.97002 * 119.99542 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.59620 * 173.75296 * 28 19 18 49 49 H 1.09004 * 109.59760 * 294.22010 * 28 19 18 50 50 H 1.09005 * 109.48022 * 56.19979 * 29 12 11 51 51 H 1.08998 * 109.48077 * 176.23180 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2981 2.1744 -1.0790 5 6 2.7220 3.3744 -0.6580 6 7 2.7238 3.3966 0.6412 7 6 2.3021 2.1846 1.0936 8 6 2.1587 1.7775 2.5032 9 8 1.7641 0.6600 2.7763 10 7 2.4648 2.6437 3.4893 11 6 2.9513 4.0201 3.3020 12 6 3.1270 4.6320 4.7009 13 6 2.2145 3.7636 5.5958 14 6 2.3679 2.3699 4.9352 15 1 3.2739 1.8784 5.2896 16 6 1.1426 1.5028 5.2316 17 6 4.5749 4.5179 5.1586 18 6 5.4706 5.3419 4.2263 19 7 4.9444 6.7120 4.1567 20 6 5.7506 7.7826 4.4375 21 1 6.5776 7.6708 5.1231 22 6 5.5017 9.0132 3.8452 23 7 4.7263 9.0880 2.7843 24 14 6.2670 10.5628 4.5540 25 1 7.5858 10.8008 3.9141 26 1 5.3739 11.7201 4.2928 27 1 6.4498 10.3993 6.0186 28 6 3.5369 6.9135 3.7866 29 6 2.6551 6.0797 4.7164 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0120 4.1949 -1.2978 36 1 2.2222 4.5973 2.7333 37 1 3.9071 4.0108 2.7781 38 1 2.5742 3.7505 6.6247 39 1 1.1808 4.1064 5.5492 40 1 1.2406 0.5471 4.7164 41 1 1.0704 1.3308 6.3055 42 1 0.2440 2.0125 4.8840 43 1 4.8839 3.4731 5.1299 44 1 4.6649 4.8959 6.1770 45 1 5.4682 4.8983 3.2306 46 1 6.4885 5.3606 4.6157 47 1 4.5521 9.9480 2.3707 48 1 3.2793 7.9677 3.8888 49 1 3.3806 6.5948 2.7560 50 1 1.6201 6.1283 4.3781 51 1 2.7252 6.4740 5.7302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086912426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:25 Heat of formation + Delta-G solvation = 9.506852 kcal Electronic energy + Delta-G solvation = -32660.419716 eV Core-core repulsion = 28561.985184 eV Total energy + Delta-G solvation = -4098.434532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.47622 -40.41460 -38.42266 -35.96599 -34.91621 -34.26451 -33.03593 -31.73793 -30.85053 -29.87321 -29.25027 -27.19809 -25.69659 -24.79440 -24.09807 -23.57812 -22.51920 -21.98020 -21.18640 -20.41862 -19.40118 -18.28354 -17.32410 -16.88529 -16.67114 -16.22369 -15.81034 -15.32751 -14.92967 -14.74213 -14.55476 -14.18231 -13.99940 -13.78542 -13.60894 -13.34603 -13.22223 -12.97113 -12.81358 -12.68205 -12.48902 -12.05721 -11.94437 -11.78593 -11.68566 -11.44954 -11.37078 -11.36288 -11.20413 -11.01612 -10.88323 -10.69673 -10.62149 -10.34677 -10.15947 -10.13199 -9.83102 -9.56784 -9.47728 -9.28326 -9.03057 -8.42434 -8.37345 -6.59967 -5.75364 -3.17460 1.05141 2.08335 2.49204 3.06118 3.36247 3.38481 3.45712 3.48030 4.02981 4.44334 4.52115 4.57943 4.81633 4.84406 4.95671 5.02656 5.05301 5.16295 5.35869 5.39961 5.41966 5.43078 5.47718 5.61566 5.65440 5.65646 5.72926 5.82251 5.90992 5.93886 5.97959 6.02225 6.06338 6.12487 6.20446 6.23009 6.28851 6.32902 6.40112 6.58293 6.63047 6.67658 6.72243 6.83195 6.90660 7.04243 7.42088 7.45666 7.64963 7.73777 7.82905 8.23211 8.49326 9.25558 9.89241 10.46500 11.32732 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003336 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.816627 B = 8391.425488 C = 9806.414629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C 0.036 3.964 4 O -0.202 6.202 5 C 0.174 3.826 6 N -0.449 5.449 7 C -0.069 4.069 8 C 0.616 3.384 9 O -0.544 6.544 10 N -0.595 5.595 11 C 0.124 3.876 12 C -0.059 4.059 13 C -0.124 4.124 14 C 0.136 3.864 15 H 0.075 0.925 16 C -0.163 4.163 17 C -0.119 4.119 18 C 0.145 3.855 19 N -0.590 5.590 20 C -0.250 4.250 21 H 0.063 0.937 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.171 3.829 29 C -0.125 4.125 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.052 0.948 47 H 0.252 0.748 48 H 0.086 0.914 49 H 0.021 0.979 50 H 0.049 0.951 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -16.416 -3.497 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.021 4.021 4 O -0.088 6.088 5 C -0.055 4.055 6 N -0.177 5.177 7 C -0.189 4.189 8 C 0.404 3.596 9 O -0.423 6.423 10 N -0.326 5.326 11 C 0.002 3.998 12 C -0.060 4.060 13 C -0.162 4.162 14 C 0.033 3.967 15 H 0.093 0.907 16 C -0.221 4.221 17 C -0.158 4.158 18 C 0.019 3.981 19 N -0.312 5.312 20 C -0.380 4.380 21 H 0.081 0.919 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.045 3.955 29 C -0.164 4.164 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.039 0.961 50 H 0.068 0.932 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.432 -16.356 -3.141 18.668 hybrid contribution 0.351 0.773 -0.268 0.891 sum -8.081 -15.583 -3.409 17.881 Atomic orbital electron populations 1.21696 0.93239 1.02673 1.02448 1.20332 0.96959 0.85578 1.05200 1.23717 0.99307 0.95528 0.83508 1.84368 1.63765 1.24388 1.36295 1.28174 0.99045 0.86739 0.91502 1.71017 1.16297 1.20629 1.09802 1.21467 1.10437 0.91549 0.95402 1.16290 0.77579 0.83669 0.82050 1.90685 1.48811 1.20034 1.82807 1.48447 1.63614 1.14845 1.05743 1.22255 1.00628 0.79725 0.97146 1.21012 0.95762 0.95990 0.93191 1.22978 1.00530 0.93417 0.99257 1.21956 0.98725 0.96477 0.79499 0.90702 1.22178 0.96769 1.01800 1.01350 1.21914 0.94192 0.98992 1.00695 1.20939 0.95232 0.86471 0.95485 1.43991 1.06436 1.00131 1.80681 1.19153 1.10760 0.88404 1.19700 0.91923 1.25022 0.99953 0.98786 0.95814 1.70035 1.41053 1.23878 1.19574 0.86353 0.78535 0.83315 0.78897 1.21486 1.21624 1.20568 1.20711 0.82235 0.99243 0.93265 1.22022 0.98847 0.93476 1.02097 0.92685 0.91220 0.91799 0.89972 0.86605 0.72886 0.90715 0.90047 0.90096 0.90839 0.89641 0.92261 0.92883 0.93273 0.91981 0.96331 0.92938 0.93756 0.89631 0.96063 0.93215 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.04 -0.43 5.93 -27.88 -0.17 -0.60 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.22 16 4 O -0.20 -2.37 10.73 6.50 0.07 -2.30 16 5 C 0.17 2.02 13.19 51.96 0.69 2.70 16 6 N -0.45 -6.82 8.84 -11.48 -0.10 -6.93 16 7 C -0.07 -1.03 6.83 -83.02 -0.57 -1.60 16 8 C 0.62 9.81 7.63 -12.52 -0.10 9.71 16 9 O -0.54 -8.74 12.46 5.26 0.07 -8.67 16 10 N -0.59 -9.31 3.25 -164.47 -0.53 -9.85 16 11 C 0.12 2.09 3.72 -3.31 -0.01 2.08 16 12 C -0.06 -0.96 0.53 -154.09 -0.08 -1.04 16 13 C -0.12 -1.68 5.41 -24.88 -0.13 -1.82 16 14 C 0.14 1.87 3.44 -66.33 -0.23 1.64 16 15 H 0.08 1.02 7.76 -51.93 -0.40 0.61 16 16 C -0.16 -2.05 8.71 37.16 0.32 -1.72 16 17 C -0.12 -2.03 4.78 -26.94 -0.13 -2.16 16 18 C 0.15 3.02 6.22 -3.65 -0.02 2.99 16 19 N -0.59 -14.45 2.99 -172.43 -0.51 -14.97 16 20 C -0.25 -6.79 9.57 -15.06 -0.14 -6.93 16 21 H 0.06 1.68 7.88 -52.48 -0.41 1.26 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 23 N -0.90 -25.75 11.20 55.49 0.62 -25.12 16 24 Si 0.90 21.50 29.59 -169.99 -5.03 16.48 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.17 3.97 5.02 -3.87 -0.02 3.95 16 29 C -0.12 -2.32 4.69 -27.16 -0.13 -2.44 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.27 6.48 -51.93 -0.34 0.93 16 35 H 0.26 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.07 1.36 7.05 -51.93 -0.37 0.99 16 37 H 0.08 1.53 5.71 -51.93 -0.30 1.24 16 38 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 39 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 40 H 0.08 1.19 5.89 -51.93 -0.31 0.88 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.76 7.50 -51.93 -0.39 0.37 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.40 6.53 -51.93 -0.34 0.07 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.09 2.25 6.05 -51.93 -0.31 1.93 16 49 H 0.02 0.52 7.47 -51.93 -0.39 0.13 16 50 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -31.20 389.33 -8.38 -39.58 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.15 Total: 1.85 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.67 Total: 4.07 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.53 Total: -56.87 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.14 Total: -10.97 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.20 -8.38 -39.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086912426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds