Wall clock time and date at job start Wed Apr 1 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46906 * 2 1 4 4 O 1.34261 * 126.52192 * 270.02542 * 3 2 1 5 5 C 1.34050 * 108.22154 * 179.97438 * 4 3 2 6 6 N 1.29939 * 109.24898 * 359.72430 * 5 4 3 7 7 C 1.36068 * 108.46986 * 0.43969 * 6 5 4 8 8 C 1.47424 * 126.44202 * 179.82272 * 7 6 5 9 9 O 1.21618 * 119.99681 * 179.68853 * 8 7 6 10 10 N 1.34767 * 120.00328 * 359.69429 * 8 7 6 11 11 C 1.47181 * 125.66446 * 359.97376 * 10 8 7 12 12 C 1.53696 * 107.11375 * 178.51394 * 11 10 8 13 13 C 1.54515 * 103.64327 * 338.45577 * 12 11 10 14 14 C 1.47482 * 125.66552 * 179.97438 * 10 8 7 15 15 H 1.08996 * 110.35612 * 85.02961 * 14 10 8 16 16 C 1.53007 * 110.35263 * 322.85214 * 14 10 8 17 17 C 1.52275 * 110.63771 * 96.56706 * 12 11 10 18 18 C 1.53307 * 109.42042 * 63.78274 * 17 12 11 19 19 N 1.46933 * 108.70925 * 53.50660 * 18 17 12 20 20 C 1.36931 * 120.56169 * 125.74418 * 19 18 17 21 21 H 1.08003 * 120.00277 * 331.46630 * 20 19 18 22 22 C 1.38817 * 120.00159 * 151.73551 * 20 19 18 23 23 N 1.31617 * 119.99622 * 343.10939 * 22 20 19 24 24 Si 1.86799 * 120.00257 * 163.09997 * 22 20 19 25 25 H 1.48503 * 109.46631 * 90.00237 * 24 22 20 26 26 H 1.48497 * 109.47403 * 210.00442 * 24 22 20 27 27 H 1.48502 * 109.47221 * 330.00747 * 24 22 20 28 28 C 1.46923 * 118.87376 * 306.01981 * 19 18 17 29 29 C 1.52275 * 110.62971 * 220.34781 * 12 11 10 30 30 H 1.08999 * 109.47535 * 60.00273 * 1 2 3 31 31 H 1.09006 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47252 * 299.99832 * 1 2 3 33 33 H 1.08990 * 109.47349 * 240.00217 * 2 1 3 34 34 H 1.08999 * 109.47535 * 119.99727 * 2 1 3 35 35 H 1.08008 * 125.37513 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.90803 * 59.14375 * 11 10 8 37 37 H 1.09000 * 110.05921 * 297.97315 * 11 10 8 38 38 H 1.09006 * 111.00959 * 152.88641 * 13 12 11 39 39 H 1.09001 * 111.01471 * 276.75296 * 13 12 11 40 40 H 1.09007 * 109.46849 * 61.45643 * 16 14 10 41 41 H 1.08993 * 109.47078 * 181.44800 * 16 14 10 42 42 H 1.08996 * 109.47294 * 301.45466 * 16 14 10 43 43 H 1.08994 * 109.48007 * 303.79421 * 17 12 11 44 44 H 1.09000 * 109.47658 * 183.76840 * 17 12 11 45 45 H 1.09005 * 109.59988 * 293.74166 * 18 17 12 46 46 H 1.09000 * 109.72999 * 173.35053 * 18 17 12 47 47 H 0.97002 * 119.99542 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.59620 * 173.75296 * 28 19 18 49 49 H 1.09004 * 109.59760 * 294.22010 * 28 19 18 50 50 H 1.09005 * 109.48022 * 56.19979 * 29 12 11 51 51 H 1.08998 * 109.48077 * 176.23180 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2981 2.1744 -1.0790 5 6 2.7220 3.3744 -0.6580 6 7 2.7238 3.3966 0.6412 7 6 2.3021 2.1846 1.0936 8 6 2.1587 1.7775 2.5032 9 8 1.7641 0.6600 2.7763 10 7 2.4648 2.6437 3.4893 11 6 2.9513 4.0201 3.3020 12 6 3.1270 4.6320 4.7009 13 6 2.2145 3.7636 5.5958 14 6 2.3679 2.3699 4.9352 15 1 3.2739 1.8784 5.2896 16 6 1.1426 1.5028 5.2316 17 6 4.5749 4.5179 5.1586 18 6 5.4706 5.3419 4.2263 19 7 4.9444 6.7120 4.1567 20 6 5.7506 7.7826 4.4375 21 1 6.5776 7.6708 5.1231 22 6 5.5017 9.0132 3.8452 23 7 4.7263 9.0880 2.7843 24 14 6.2670 10.5628 4.5540 25 1 7.5858 10.8008 3.9141 26 1 5.3739 11.7201 4.2928 27 1 6.4498 10.3993 6.0186 28 6 3.5369 6.9135 3.7866 29 6 2.6551 6.0797 4.7164 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0120 4.1949 -1.2978 36 1 2.2222 4.5973 2.7333 37 1 3.9071 4.0108 2.7781 38 1 2.5742 3.7505 6.6247 39 1 1.1808 4.1064 5.5492 40 1 1.2406 0.5471 4.7164 41 1 1.0704 1.3308 6.3055 42 1 0.2440 2.0125 4.8840 43 1 4.8839 3.4731 5.1299 44 1 4.6649 4.8959 6.1770 45 1 5.4682 4.8983 3.2306 46 1 6.4885 5.3606 4.6157 47 1 4.5521 9.9480 2.3707 48 1 3.2793 7.9677 3.8888 49 1 3.3806 6.5948 2.7560 50 1 1.6201 6.1283 4.3781 51 1 2.7252 6.4740 5.7302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086912426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:24 Heat of formation + Delta-G solvation = -9.630096 kcal Electronic energy + Delta-G solvation = -32661.249557 eV Core-core repulsion = 28561.985184 eV Total energy + Delta-G solvation = -4099.264372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.46140 -41.68710 -39.76054 -37.50911 -35.94771 -35.16087 -34.69350 -32.95745 -32.53600 -31.56259 -30.19747 -28.76170 -26.91225 -26.12705 -25.53189 -24.56035 -24.01405 -23.23461 -22.60627 -21.64130 -20.53768 -19.79802 -18.59303 -18.29225 -17.87772 -17.44773 -16.96061 -16.82199 -16.34079 -15.89201 -15.76042 -15.50107 -15.44644 -15.14857 -14.88193 -14.74614 -14.48992 -14.43093 -14.16582 -13.87092 -13.56107 -13.29508 -13.20710 -13.05911 -12.96481 -12.79721 -12.69166 -12.55842 -12.46921 -12.39949 -12.34297 -12.16451 -12.00113 -11.95293 -11.82277 -11.66655 -11.34859 -11.05729 -10.92254 -10.74931 -10.46817 -10.06391 -9.58914 -8.60120 -7.82682 -5.27994 0.03592 1.05196 1.47812 1.49553 1.55202 1.58905 1.93665 2.21234 2.54010 3.04474 3.30140 3.47867 3.54402 3.58801 3.72207 3.82216 3.84989 4.08102 4.14076 4.22757 4.23728 4.30112 4.32133 4.46027 4.56174 4.58510 4.64720 4.73179 4.79020 4.79920 4.80097 4.87574 4.93433 4.93516 4.97386 5.07464 5.08802 5.14250 5.17808 5.22397 5.23934 5.28597 5.34514 5.38496 5.43539 5.55937 5.57801 5.69609 5.82696 6.38850 6.43825 6.50797 7.05152 7.19927 7.91445 8.43704 9.22959 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003336 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.816627 B = 8391.425488 C = 9806.414629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C 0.046 3.954 4 O -0.196 6.196 5 C 0.186 3.814 6 N -0.493 5.493 7 C -0.104 4.104 8 C 0.610 3.390 9 O -0.549 6.549 10 N -0.600 5.600 11 C 0.143 3.857 12 C -0.057 4.057 13 C -0.110 4.110 14 C 0.132 3.868 15 H 0.082 0.918 16 C -0.154 4.154 17 C -0.105 4.105 18 C 0.143 3.857 19 N -0.606 5.606 20 C -0.261 4.261 21 H 0.064 0.936 22 C -0.048 4.048 23 N -0.931 5.931 24 Si 0.963 3.037 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.182 3.818 29 C -0.111 4.111 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.292 0.708 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.007 0.993 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.050 0.950 49 H -0.004 1.004 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 -17.850 -2.620 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.012 4.012 4 O -0.083 6.083 5 C -0.042 4.042 6 N -0.221 5.221 7 C -0.223 4.223 8 C 0.399 3.601 9 O -0.430 6.430 10 N -0.331 5.331 11 C 0.021 3.979 12 C -0.058 4.058 13 C -0.148 4.148 14 C 0.030 3.970 15 H 0.100 0.900 16 C -0.211 4.211 17 C -0.144 4.144 18 C 0.017 3.983 19 N -0.329 5.329 20 C -0.392 4.392 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.578 5.578 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.196 1.196 28 C 0.056 3.944 29 C -0.150 4.150 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.307 0.693 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.014 0.986 50 H 0.081 0.919 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.882 -17.826 -2.236 20.042 hybrid contribution 0.524 1.179 -0.659 1.449 sum -8.357 -16.647 -2.895 18.851 Atomic orbital electron populations 1.21666 0.92324 1.03883 1.01628 1.20464 0.97573 0.83967 1.05962 1.24195 0.97677 0.96258 0.83025 1.84401 1.63612 1.24400 1.35846 1.28987 0.97004 0.87157 0.91052 1.70977 1.18131 1.21398 1.11630 1.21546 1.12660 0.92344 0.95704 1.16511 0.77353 0.83662 0.82580 1.90670 1.49102 1.20095 1.83124 1.48503 1.63725 1.14186 1.06715 1.21864 0.98773 0.80454 0.96858 1.20929 0.96108 0.94969 0.93814 1.22924 1.00111 0.92123 0.99649 1.22137 0.99682 0.96845 0.78342 0.90047 1.22079 0.95694 1.00499 1.02832 1.21750 0.93608 0.99322 0.99680 1.21044 0.96085 0.85233 0.95897 1.44232 1.06842 1.01066 1.80760 1.19475 1.10908 0.89454 1.19322 0.91846 1.25749 1.00924 1.01501 0.96213 1.70192 1.42622 1.24084 1.20854 0.85348 0.77434 0.79580 0.78495 1.21351 1.21935 1.19599 1.20455 0.82803 0.97928 0.93164 1.21810 0.98442 0.94102 1.00695 0.92022 0.89008 0.94024 0.87295 0.87650 0.69314 0.92653 0.92497 0.87758 0.90193 0.91086 0.89638 0.93567 0.91151 0.91347 0.97514 0.93098 0.94239 0.93126 0.98590 0.91938 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 71.98 0.71 -1.55 16 2 C -0.04 -0.79 5.93 29.85 0.18 -0.61 16 3 C 0.05 1.14 6.69 25.19 0.17 1.30 16 4 O -0.20 -4.41 10.73 0.35 0.00 -4.40 16 5 C 0.19 4.24 13.19 130.52 1.72 5.97 16 6 N -0.49 -15.34 8.84 -305.14 -2.70 -18.03 16 7 C -0.10 -3.17 6.83 40.41 0.28 -2.89 16 8 C 0.61 19.49 7.63 86.66 0.66 20.15 16 9 O -0.55 -17.53 12.46 -4.09 -0.05 -17.58 16 10 N -0.60 -18.54 3.25 -792.50 -2.57 -21.12 16 11 C 0.14 4.88 3.72 86.48 0.32 5.20 16 12 C -0.06 -1.82 0.53 -51.91 -0.03 -1.84 16 13 C -0.11 -2.70 5.41 31.79 0.17 -2.52 16 14 C 0.13 3.35 3.44 45.49 0.16 3.51 16 15 H 0.08 1.99 7.76 -2.39 -0.02 1.97 16 16 C -0.15 -3.51 8.71 71.98 0.63 -2.89 16 17 C -0.10 -3.43 4.78 30.46 0.15 -3.28 16 18 C 0.14 5.98 6.22 86.40 0.54 6.52 16 19 N -0.61 -30.28 2.99 -699.45 -2.09 -32.37 16 20 C -0.26 -14.35 9.57 84.04 0.80 -13.55 16 21 H 0.06 3.41 7.88 -2.91 -0.02 3.38 16 22 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 23 N -0.93 -54.91 11.20 21.65 0.24 -54.67 16 24 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 C 0.18 8.73 5.02 86.26 0.43 9.16 16 29 C -0.11 -4.09 4.69 30.31 0.14 -3.94 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 2.22 6.48 -2.39 -0.02 2.21 16 35 H 0.29 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.06 2.09 7.05 -2.39 -0.02 2.07 16 37 H 0.06 2.22 5.71 -2.39 -0.01 2.21 16 38 H 0.10 2.13 8.01 -2.38 -0.02 2.11 16 39 H 0.08 1.90 7.92 -2.39 -0.02 1.88 16 40 H 0.07 1.86 5.89 -2.38 -0.01 1.85 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 2.03 7.50 -2.39 -0.02 2.02 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.01 0.31 6.53 -2.38 -0.02 0.29 16 46 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 48 H 0.05 2.77 6.05 -2.39 -0.01 2.75 16 49 H 0.00 -0.21 7.47 -2.38 -0.02 -0.22 16 50 H 0.06 2.12 8.10 -2.38 -0.02 2.10 16 51 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.81 389.33 3.24 -66.57 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.93 Total: 18.36 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 7.45 Total: 16.44 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -7.12 Total: -126.18 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.81 3.24 -66.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086912426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.942 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds