Wall clock time and date at job start Wed Apr 1 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47119 * 2 1 4 4 N 1.30014 * 127.33504 * 270.14379 * 3 2 1 5 5 O 1.20659 * 112.30253 * 180.27374 * 4 3 2 6 6 C 1.33489 * 113.15434 * 359.73290 * 5 4 3 7 7 C 1.37355 * 106.34385 * 0.02562 * 6 5 4 8 8 C 1.47402 * 128.56285 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99806 * 172.42916 * 8 7 6 10 10 N 1.34765 * 120.00218 * 352.43042 * 8 7 6 11 11 C 1.47579 * 125.63055 * 2.35017 * 10 8 7 12 12 C 1.54120 * 104.78654 * 203.32351 * 11 10 8 13 13 C 1.54398 * 102.47460 * 323.91985 * 12 11 10 14 14 C 1.47091 * 125.63082 * 182.35407 * 10 8 7 15 15 H 1.09000 * 109.87439 * 59.58145 * 14 10 8 16 16 C 1.53003 * 109.99808 * 298.50543 * 14 10 8 17 17 C 1.52102 * 110.69242 * 206.07375 * 12 11 10 18 18 C 1.53330 * 109.49729 * 295.39043 * 17 12 11 19 19 N 1.46934 * 108.69519 * 306.72086 * 18 17 12 20 20 C 1.36941 * 120.57815 * 234.38998 * 19 18 17 21 21 H 1.08002 * 119.99945 * 30.55038 * 20 19 18 22 22 C 1.38815 * 119.99781 * 210.55824 * 20 19 18 23 23 N 1.31619 * 120.00149 * 16.45884 * 22 20 19 24 24 Si 1.86802 * 119.99783 * 196.45499 * 22 20 19 25 25 H 1.48502 * 109.47021 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46835 * 120.00088 * 24 22 20 27 27 H 1.48494 * 109.46985 * 239.99896 * 24 22 20 28 28 C 1.46941 * 118.84738 * 54.40949 * 19 18 17 29 29 C 1.52111 * 110.68493 * 81.77218 * 12 11 10 30 30 H 1.08995 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47541 * 300.00861 * 1 2 3 32 32 H 1.09001 * 109.46864 * 60.00176 * 1 2 3 33 33 H 1.08995 * 109.47080 * 239.99405 * 2 1 3 34 34 H 1.09003 * 109.46732 * 119.99298 * 2 1 3 35 35 H 1.08003 * 126.82781 * 179.97438 * 6 5 4 36 36 H 1.09005 * 110.37233 * 84.49867 * 11 10 8 37 37 H 1.08995 * 110.37059 * 322.15599 * 11 10 8 38 38 H 1.08999 * 110.73213 * 152.98485 * 13 12 11 39 39 H 1.08994 * 110.72900 * 276.11825 * 13 12 11 40 40 H 1.09007 * 109.47063 * 302.08424 * 16 14 10 41 41 H 1.08995 * 109.47451 * 62.08737 * 16 14 10 42 42 H 1.09005 * 109.46666 * 182.08985 * 16 14 10 43 43 H 1.09005 * 109.46633 * 175.38467 * 17 12 11 44 44 H 1.09001 * 109.46970 * 55.39974 * 17 12 11 45 45 H 1.08995 * 109.60081 * 66.47980 * 18 17 12 46 46 H 1.09004 * 109.59964 * 186.95655 * 18 17 12 47 47 H 0.96997 * 120.00232 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.59945 * 65.34217 * 28 19 18 49 49 H 1.08998 * 109.60319 * 185.81844 * 28 19 18 50 50 H 1.08996 * 109.46654 * 304.60007 * 29 12 11 51 51 H 1.09003 * 109.46162 * 184.60941 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1651 -1.0337 5 8 2.6869 3.2617 -0.7208 6 6 2.7518 3.4388 0.6007 7 6 2.3302 2.2618 1.1696 8 6 2.2108 1.9232 2.5992 9 8 1.6885 0.8775 2.9348 10 7 2.6803 2.7725 3.5343 11 6 3.2893 4.0906 3.2705 12 6 4.1651 4.3739 4.5066 13 6 3.3295 3.7660 5.6538 14 6 2.6705 2.5387 4.9865 15 1 3.2397 1.6391 5.2208 16 6 1.2310 2.3872 5.4824 17 6 4.3397 5.8711 4.7100 18 6 5.1165 6.4611 3.5270 19 7 6.3627 5.7018 3.3562 20 6 7.5725 6.3433 3.3383 21 1 7.7102 7.2521 3.9053 22 6 8.6217 5.8255 2.5913 23 7 8.3852 4.9269 1.6591 24 14 10.3692 6.4041 2.9090 25 1 10.3665 7.4104 4.0011 26 1 11.2096 5.2459 3.3058 27 1 10.9205 7.0155 1.6732 28 6 6.2885 4.2421 3.2045 29 6 5.5054 3.6643 4.3894 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.0729 4.3300 1.1194 36 1 2.5162 4.8526 3.1704 37 1 3.9035 4.0516 2.3709 38 1 3.9724 3.4580 6.4783 39 1 2.5749 4.4731 5.9980 40 1 0.6633 3.2826 5.2290 41 1 0.7725 1.5198 5.0076 42 1 1.2318 2.2515 6.5639 43 1 4.8916 6.0504 5.6327 44 1 3.3604 6.3456 4.7745 45 1 4.5154 6.3859 2.6209 46 1 5.3499 7.5067 3.7279 47 1 9.1183 4.5648 1.1374 48 1 5.7770 3.9968 2.2738 49 1 7.2950 3.8240 3.1925 50 1 5.3397 2.5988 4.2303 51 1 6.0751 3.8102 5.3072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086941147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:49 Heat of formation + Delta-G solvation = 31.878261 kcal Electronic energy + Delta-G solvation = -32851.772304 eV Core-core repulsion = 28754.307869 eV Total energy + Delta-G solvation = -4097.464435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.00506 -41.79765 -39.71367 -37.53802 -36.24536 -34.81551 -34.20141 -32.53471 -32.27017 -31.98408 -31.58627 -28.74488 -27.32349 -26.26972 -25.79583 -25.05883 -23.91326 -23.05844 -22.45591 -21.73919 -20.54171 -19.84040 -18.80759 -18.61301 -18.16709 -17.86720 -17.29593 -16.82562 -16.50072 -15.82197 -15.50549 -15.44192 -15.29148 -15.21440 -14.85753 -14.79457 -14.58993 -14.19215 -14.03226 -13.93440 -13.68807 -13.44933 -13.17857 -13.06127 -12.97973 -12.86942 -12.73283 -12.60093 -12.54469 -12.29578 -12.26432 -11.99040 -11.94491 -11.83441 -11.78121 -11.42285 -11.09230 -11.07167 -11.04276 -10.89634 -10.82831 -10.49542 -9.71517 -8.57214 -7.84129 -5.30043 -0.01437 0.67455 1.45723 1.49571 1.58012 1.61726 2.07032 2.16746 2.53289 2.89981 3.20033 3.30126 3.41211 3.48467 3.74740 3.76259 3.83461 3.87496 4.13784 4.15800 4.25250 4.28937 4.31279 4.31981 4.39314 4.48857 4.53358 4.59077 4.69142 4.72086 4.77368 4.83059 4.86758 4.92876 4.95741 4.99195 5.09212 5.10535 5.16191 5.23507 5.26728 5.32972 5.34415 5.41251 5.44014 5.47123 5.58546 5.70673 5.80553 6.36478 6.44564 6.98414 7.10671 7.20436 7.93115 8.43186 9.20905 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003763 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.559442 B = 7439.692654 C = 9005.850966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C 0.065 3.935 4 N -0.376 5.376 5 O 0.088 5.912 6 C 0.009 3.991 7 C -0.271 4.271 8 C 0.609 3.391 9 O -0.557 6.557 10 N -0.600 5.600 11 C 0.090 3.910 12 C -0.051 4.051 13 C -0.107 4.107 14 C 0.135 3.865 15 H 0.062 0.938 16 C -0.152 4.152 17 C -0.106 4.106 18 C 0.136 3.864 19 N -0.606 5.606 20 C -0.255 4.255 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.932 5.932 24 Si 0.955 3.045 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.295 1.295 28 C 0.183 3.817 29 C -0.113 4.113 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.026 0.974 46 H 0.053 0.947 47 H 0.246 0.754 48 H 0.000 1.000 49 H 0.038 0.962 50 H 0.047 0.953 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 -3.266 5.660 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.099 4.099 4 N -0.085 5.085 5 O 0.032 5.968 6 C -0.073 4.073 7 C -0.278 4.278 8 C 0.399 3.601 9 O -0.438 6.438 10 N -0.332 5.332 11 C -0.032 4.032 12 C -0.052 4.052 13 C -0.145 4.145 14 C 0.033 3.967 15 H 0.080 0.920 16 C -0.210 4.210 17 C -0.145 4.145 18 C 0.011 3.989 19 N -0.330 5.330 20 C -0.386 4.386 21 H 0.083 0.917 22 C -0.242 4.242 23 N -0.578 5.578 24 Si 0.785 3.215 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.222 1.222 28 C 0.057 3.943 29 C -0.152 4.152 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.018 0.982 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.036 -4.054 4.374 18.050 hybrid contribution 1.701 0.029 0.374 1.742 sum -15.335 -4.025 4.748 16.550 Atomic orbital electron populations 1.21595 0.92415 1.03469 1.01552 1.20093 0.97725 0.86246 1.04278 1.25232 0.98741 0.99629 0.86257 1.73642 1.17402 0.93233 1.24246 1.84572 1.61779 1.26592 1.23893 1.27591 0.95320 1.01133 0.83270 1.22334 1.13999 0.96000 0.95462 1.16459 0.78041 0.82751 0.82884 1.90731 1.45837 1.25230 1.81974 1.48425 1.58983 1.18759 1.07002 1.22945 0.96474 0.84143 0.99637 1.20872 0.93498 0.96628 0.94153 1.22788 0.99134 0.95573 0.96994 1.21726 0.97790 0.99090 0.78106 0.91951 1.22061 0.94647 1.02151 1.02136 1.21758 1.00982 0.92614 0.99127 1.21186 0.86948 0.95034 0.95715 1.44243 1.01888 1.01893 1.84984 1.19484 0.89332 1.08514 1.21262 0.91692 1.25723 1.02123 1.00407 0.95936 1.70158 1.30920 1.33996 1.22741 0.85387 0.81285 0.77495 0.77382 1.18926 1.22288 1.22246 1.20493 0.97436 0.83622 0.92705 1.21798 0.95820 0.97849 0.99731 0.89556 0.93344 0.92620 0.88931 0.89312 0.73299 0.88024 0.90872 0.89156 0.87759 0.91728 0.93480 0.89596 0.91854 0.88677 0.95650 0.92809 0.94467 0.98179 0.94306 0.93414 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.90 71.98 0.71 -2.01 16 2 C -0.05 -1.10 6.16 29.85 0.18 -0.92 16 3 C 0.06 1.89 6.84 45.16 0.31 2.19 16 4 N -0.38 -11.56 12.01 -44.78 -0.54 -12.10 16 5 O 0.09 2.58 11.06 77.02 0.85 3.43 16 6 C 0.01 0.22 10.70 67.61 0.72 0.95 16 7 C -0.27 -7.84 6.39 -18.75 -0.12 -7.96 16 8 C 0.61 18.13 7.65 86.66 0.66 18.79 16 9 O -0.56 -18.72 14.78 -4.08 -0.06 -18.78 16 10 N -0.60 -15.19 3.06 -792.67 -2.43 -17.62 16 11 C 0.09 2.10 3.40 86.55 0.29 2.39 16 12 C -0.05 -1.23 0.54 -51.92 -0.03 -1.26 16 13 C -0.11 -1.97 5.42 31.56 0.17 -1.80 16 14 C 0.14 2.96 3.11 45.37 0.14 3.10 16 15 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 16 C -0.15 -2.87 9.10 71.98 0.66 -2.22 16 17 C -0.11 -2.56 4.82 30.41 0.15 -2.41 16 18 C 0.14 4.56 6.25 86.41 0.54 5.10 16 19 N -0.61 -27.08 2.97 -698.50 -2.07 -29.15 16 20 C -0.26 -13.12 9.55 84.03 0.80 -12.32 16 21 H 0.07 3.27 7.88 -2.91 -0.02 3.25 16 22 C -0.05 -2.48 4.91 84.86 0.42 -2.06 16 23 N -0.93 -53.54 11.33 21.65 0.25 -53.30 16 24 Si 0.96 43.70 29.58 68.60 2.03 45.73 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 28 C 0.18 8.02 5.00 86.41 0.43 8.45 16 29 C -0.11 -3.72 4.83 30.41 0.15 -3.58 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.31 7.27 -2.39 -0.02 2.29 16 35 H 0.25 5.32 5.07 -2.91 -0.01 5.31 16 36 H 0.10 1.82 7.94 -2.38 -0.02 1.80 16 37 H 0.07 2.02 3.37 -2.39 -0.01 2.01 16 38 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 39 H 0.10 1.43 7.70 -2.39 -0.02 1.42 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.05 1.12 6.83 -2.39 -0.02 1.11 16 42 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.03 0.81 7.65 -2.39 -0.02 0.79 16 46 H 0.05 1.82 7.93 -2.38 -0.02 1.80 16 47 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.00 0.01 6.59 -2.39 -0.02 0.00 16 49 H 0.04 2.04 6.19 -2.39 -0.01 2.02 16 50 H 0.05 1.57 7.84 -2.39 -0.02 1.56 16 51 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.64 390.62 5.15 -61.49 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.93 Total: 15.86 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.19 Total: 4.43 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.79 Total: -112.16 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.79 Total: -15.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.64 5.15 -61.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086941147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.367 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds