Wall clock time and date at job start Wed Apr 1 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 N 1.33696 * 126.27390 * 270.02566 * 3 2 1 5 5 C 1.30619 * 108.99429 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15326 * 359.74934 * 5 4 3 7 7 C 1.35341 * 107.68645 * 0.40196 * 6 5 4 8 8 C 1.46725 * 126.64521 * 179.87199 * 7 6 5 9 9 O 1.21680 * 120.00044 * 179.68340 * 8 7 6 10 10 N 1.34773 * 119.99531 * 359.68705 * 8 7 6 11 11 C 1.47183 * 125.66847 * 359.96919 * 10 8 7 12 12 C 1.53696 * 107.11254 * 178.51333 * 11 10 8 13 13 C 1.54512 * 103.64765 * 338.46401 * 12 11 10 14 14 C 1.47488 * 125.66007 * 180.02562 * 10 8 7 15 15 H 1.08998 * 110.35437 * 85.03116 * 14 10 8 16 16 C 1.53004 * 110.35335 * 322.85447 * 14 10 8 17 17 C 1.52275 * 110.63241 * 96.57206 * 12 11 10 18 18 C 1.53316 * 109.42240 * 63.78293 * 17 12 11 19 19 N 1.46925 * 108.70826 * 53.50501 * 18 17 12 20 20 C 1.36931 * 120.56411 * 125.74304 * 19 18 17 21 21 H 1.08003 * 120.00464 * 331.47063 * 20 19 18 22 22 C 1.38814 * 120.00103 * 151.73857 * 20 19 18 23 23 N 1.31616 * 120.00048 * 343.10060 * 22 20 19 24 24 Si 1.86801 * 120.00137 * 163.10451 * 22 20 19 25 25 H 1.48497 * 109.46958 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47518 * 120.00314 * 24 22 20 27 27 H 1.48503 * 109.47174 * 240.00044 * 24 22 20 28 28 C 1.46932 * 118.87585 * 306.02102 * 19 18 17 29 29 C 1.52267 * 110.62976 * 220.34860 * 12 11 10 30 30 H 1.09001 * 109.47090 * 59.99879 * 1 2 3 31 31 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47287 * 300.00317 * 1 2 3 33 33 H 1.09002 * 109.47081 * 240.00320 * 2 1 3 34 34 H 1.09001 * 109.47090 * 120.00121 * 2 1 3 35 35 H 1.07999 * 125.42142 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.90397 * 59.14612 * 11 10 8 37 37 H 1.09000 * 110.06446 * 297.97477 * 11 10 8 38 38 H 1.08996 * 111.01435 * 152.88018 * 13 12 11 39 39 H 1.09001 * 111.01163 * 276.75389 * 13 12 11 40 40 H 1.08993 * 109.47106 * 61.44759 * 16 14 10 41 41 H 1.08995 * 109.46897 * 181.45424 * 16 14 10 42 42 H 1.09006 * 109.46493 * 301.45404 * 16 14 10 43 43 H 1.08994 * 109.48347 * 303.79297 * 17 12 11 44 44 H 1.09004 * 109.47928 * 183.76408 * 17 12 11 45 45 H 1.08998 * 109.59764 * 293.73844 * 18 17 12 46 46 H 1.08993 * 109.72389 * 173.34744 * 18 17 12 47 47 H 0.97000 * 120.00754 * 179.97438 * 23 22 20 48 48 H 1.08995 * 109.59898 * 173.74640 * 28 19 18 49 49 H 1.08998 * 109.59599 * 294.22337 * 28 19 18 50 50 H 1.09004 * 109.48117 * 56.20844 * 29 12 11 51 51 H 1.09005 * 109.48339 * 176.23467 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1667 -1.0779 5 6 2.7110 3.3427 -0.6899 6 8 2.7206 3.3857 0.6461 7 6 2.3011 2.1814 1.0992 8 6 2.1574 1.7750 2.5017 9 8 1.7621 0.6568 2.7737 10 7 2.4632 2.6403 3.4886 11 6 2.9504 4.0167 3.3028 12 6 3.1255 4.6273 4.7024 13 6 2.2122 3.7585 5.5960 14 6 2.3664 2.3649 4.9343 15 1 3.2725 1.8733 5.2882 16 6 1.1414 1.4970 5.2298 17 6 4.5730 4.5123 5.1608 18 6 5.4696 5.3368 4.2297 19 7 4.9440 6.7071 4.1610 20 6 5.7504 7.7772 4.4432 21 1 6.5770 7.6645 5.1292 22 6 5.5022 9.0083 3.8519 23 7 4.7276 9.0845 2.7906 24 14 6.2676 10.5571 4.5625 25 1 7.0903 10.2039 5.7473 26 1 7.1271 11.2002 3.5365 27 1 5.1935 11.4984 4.9692 28 6 3.5367 6.9094 3.7903 29 6 2.6542 6.0751 4.7189 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9966 4.1530 -1.3443 36 1 2.2219 4.5946 2.7342 37 1 3.9066 4.0075 2.7796 38 1 2.5713 3.7442 6.6250 39 1 1.1787 4.1016 5.5491 40 1 1.2396 0.5421 4.7135 41 1 1.0692 1.3240 6.3035 42 1 0.2427 2.0070 4.8826 43 1 4.8818 3.4674 5.1313 44 1 4.6628 4.8894 6.1796 45 1 5.4677 4.8941 3.2337 46 1 6.4872 5.3547 4.6198 47 1 4.5538 9.9448 2.3776 48 1 3.2794 7.9636 3.8933 49 1 3.3809 6.5917 2.7594 50 1 1.6193 6.1244 4.3800 51 1 2.7238 6.4686 5.7330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086941984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:19 Heat of formation + Delta-G solvation = 7.500641 kcal Electronic energy + Delta-G solvation = -32726.416490 eV Core-core repulsion = 28627.894963 eV Total energy + Delta-G solvation = -4098.521528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.49640 -40.56715 -38.58783 -36.23409 -35.58015 -33.17869 -33.09882 -32.04049 -30.96635 -29.99468 -29.51658 -27.30792 -25.86506 -24.80968 -24.17989 -23.59817 -22.63936 -22.02728 -21.17753 -20.53095 -19.57883 -18.43416 -17.35064 -16.95657 -16.78991 -16.51448 -16.00058 -15.26095 -14.99850 -14.86632 -14.35244 -14.26071 -14.05555 -13.89966 -13.69194 -13.34957 -13.31915 -13.09947 -12.84741 -12.78448 -12.63004 -12.18915 -11.96289 -11.81025 -11.64156 -11.56038 -11.32921 -11.21490 -11.18529 -11.12907 -10.92570 -10.87177 -10.77034 -10.48277 -10.29349 -10.21448 -9.93604 -9.76274 -9.59663 -9.40564 -9.10014 -8.58349 -8.50692 -6.70449 -5.83806 -3.26518 0.77951 2.35438 2.40380 3.02003 3.03865 3.33244 3.41920 3.43585 3.94120 4.39096 4.45304 4.58329 4.63447 4.81097 4.92228 5.15308 5.21918 5.23483 5.23988 5.30320 5.34681 5.35583 5.47162 5.53417 5.58542 5.63150 5.71666 5.77657 5.82082 5.89423 5.92413 5.98981 6.01736 6.03533 6.08278 6.13800 6.15630 6.22659 6.25459 6.44332 6.46327 6.53808 6.59272 6.67291 6.77444 6.90271 7.28852 7.35660 7.51163 7.60242 7.75684 7.98046 8.40566 9.16748 9.79919 10.36433 11.24472 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003347 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.739880 B = 8363.241753 C = 9760.442078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.077 3.923 4 N -0.496 5.496 5 C 0.203 3.797 6 O -0.179 6.179 7 C -0.109 4.109 8 C 0.622 3.378 9 O -0.520 6.520 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.054 4.054 13 C -0.124 4.124 14 C 0.137 3.863 15 H 0.078 0.922 16 C -0.165 4.165 17 C -0.120 4.120 18 C 0.144 3.856 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.171 3.829 29 C -0.127 4.127 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.253 0.747 48 H 0.088 0.912 49 H 0.018 0.982 50 H 0.050 0.950 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -14.556 -0.935 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.047 4.047 4 N -0.225 5.225 5 C -0.022 4.022 6 O -0.064 6.064 7 C -0.164 4.164 8 C 0.410 3.590 9 O -0.400 6.400 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.055 4.055 13 C -0.162 4.162 14 C 0.035 3.965 15 H 0.096 0.904 16 C -0.222 4.222 17 C -0.159 4.159 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.045 3.955 29 C -0.166 4.166 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.271 0.729 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.036 0.964 50 H 0.069 0.931 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.931 -15.134 -1.517 17.153 hybrid contribution 0.575 1.494 0.707 1.750 sum -7.356 -13.640 -0.811 15.518 Atomic orbital electron populations 1.21625 0.93944 1.02064 1.01995 1.20123 0.96528 0.87888 1.04196 1.22010 0.98133 0.98144 0.86419 1.70348 1.17441 1.03350 1.31371 1.28403 0.96612 0.97415 0.79742 1.84669 1.64126 1.33437 1.24155 1.22899 1.12043 0.85327 0.96138 1.15900 0.78183 0.84008 0.80885 1.90768 1.48282 1.19471 1.81468 1.48575 1.63881 1.14598 1.06276 1.22325 1.00129 0.80109 0.98521 1.20950 0.96063 0.96051 0.92412 1.23000 1.00584 0.93203 0.99377 1.22002 0.99019 0.96616 0.78903 0.90389 1.22188 0.96676 1.01751 1.01606 1.21937 0.93938 0.99140 1.00909 1.20946 0.95444 0.86444 0.95362 1.44012 1.06425 1.00189 1.80641 1.19210 1.10811 0.88317 1.19785 0.91749 1.25031 0.99882 0.98859 0.95756 1.70027 1.41129 1.23880 1.19568 0.86259 0.78569 0.83575 0.78580 1.20282 1.21743 1.21582 1.20718 0.82339 0.99455 0.93018 1.22049 0.98891 0.93288 1.02380 0.92775 0.91831 0.92418 0.90239 0.88294 0.72855 0.91008 0.90249 0.89820 0.90657 0.89600 0.92006 0.92745 0.93109 0.91708 0.96529 0.92707 0.93713 0.89422 0.96397 0.93088 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.58 5.92 -27.88 -0.17 -0.74 16 3 C 0.08 1.07 6.41 -82.46 -0.53 0.54 16 4 N -0.50 -6.65 11.26 -10.88 -0.12 -6.77 16 5 C 0.20 2.38 13.21 52.25 0.69 3.07 16 6 O -0.18 -2.53 8.51 4.43 0.04 -2.50 16 7 C -0.11 -1.60 6.98 -36.84 -0.26 -1.85 16 8 C 0.62 9.38 7.60 -12.83 -0.10 9.28 16 9 O -0.52 -8.11 12.45 5.21 0.06 -8.04 16 10 N -0.60 -8.65 3.25 -164.69 -0.53 -9.18 16 11 C 0.11 1.70 3.76 -3.31 -0.01 1.69 16 12 C -0.05 -0.81 0.53 -154.10 -0.08 -0.89 16 13 C -0.12 -1.53 5.41 -24.86 -0.13 -1.67 16 14 C 0.14 1.72 3.44 -66.31 -0.23 1.49 16 15 H 0.08 0.97 7.76 -51.93 -0.40 0.56 16 16 C -0.16 -1.91 8.71 37.16 0.32 -1.59 16 17 C -0.12 -1.91 4.78 -26.94 -0.13 -2.04 16 18 C 0.14 2.84 6.23 -3.65 -0.02 2.82 16 19 N -0.59 -13.85 2.99 -172.44 -0.51 -14.37 16 20 C -0.25 -6.61 9.57 -15.06 -0.14 -6.75 16 21 H 0.06 1.68 7.88 -52.48 -0.41 1.27 16 22 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 23 N -0.90 -25.09 11.20 55.49 0.62 -24.46 16 24 Si 0.90 21.04 29.59 -169.99 -5.03 16.02 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.17 3.76 5.02 -3.87 -0.02 3.74 16 29 C -0.13 -2.19 4.69 -27.17 -0.13 -2.32 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.21 6.47 -51.93 -0.34 0.88 16 35 H 0.26 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.07 1.16 7.12 -51.93 -0.37 0.79 16 37 H 0.08 1.34 5.77 -51.93 -0.30 1.04 16 38 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 39 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 40 H 0.09 1.12 5.89 -51.93 -0.31 0.82 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.73 7.49 -51.93 -0.39 0.34 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.34 6.53 -51.93 -0.34 0.00 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 47 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 48 H 0.09 2.22 6.05 -51.93 -0.31 1.90 16 49 H 0.02 0.41 7.47 -51.93 -0.39 0.03 16 50 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -30.04 389.52 -8.42 -38.45 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.16 Total: 1.31 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.65 Total: 3.68 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.55 Total: -54.79 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.04 -8.42 -38.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086941984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.954 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds