Wall clock time and date at job start Wed Apr 1 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 N 1.33696 * 126.27390 * 270.02566 * 3 2 1 5 5 C 1.30619 * 108.99429 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15326 * 359.74934 * 5 4 3 7 7 C 1.35341 * 107.68645 * 0.40196 * 6 5 4 8 8 C 1.46725 * 126.64521 * 179.87199 * 7 6 5 9 9 O 1.21680 * 120.00044 * 179.68340 * 8 7 6 10 10 N 1.34773 * 119.99531 * 359.68705 * 8 7 6 11 11 C 1.47183 * 125.66847 * 359.96919 * 10 8 7 12 12 C 1.53696 * 107.11254 * 178.51333 * 11 10 8 13 13 C 1.54512 * 103.64765 * 338.46401 * 12 11 10 14 14 C 1.47488 * 125.66007 * 180.02562 * 10 8 7 15 15 H 1.08998 * 110.35437 * 85.03116 * 14 10 8 16 16 C 1.53004 * 110.35335 * 322.85447 * 14 10 8 17 17 C 1.52275 * 110.63241 * 96.57206 * 12 11 10 18 18 C 1.53316 * 109.42240 * 63.78293 * 17 12 11 19 19 N 1.46925 * 108.70826 * 53.50501 * 18 17 12 20 20 C 1.36931 * 120.56411 * 125.74304 * 19 18 17 21 21 H 1.08003 * 120.00464 * 331.47063 * 20 19 18 22 22 C 1.38814 * 120.00103 * 151.73857 * 20 19 18 23 23 N 1.31616 * 120.00048 * 343.10060 * 22 20 19 24 24 Si 1.86801 * 120.00137 * 163.10451 * 22 20 19 25 25 H 1.48497 * 109.46958 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47518 * 120.00314 * 24 22 20 27 27 H 1.48503 * 109.47174 * 240.00044 * 24 22 20 28 28 C 1.46932 * 118.87585 * 306.02102 * 19 18 17 29 29 C 1.52267 * 110.62976 * 220.34860 * 12 11 10 30 30 H 1.09001 * 109.47090 * 59.99879 * 1 2 3 31 31 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47287 * 300.00317 * 1 2 3 33 33 H 1.09002 * 109.47081 * 240.00320 * 2 1 3 34 34 H 1.09001 * 109.47090 * 120.00121 * 2 1 3 35 35 H 1.07999 * 125.42142 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.90397 * 59.14612 * 11 10 8 37 37 H 1.09000 * 110.06446 * 297.97477 * 11 10 8 38 38 H 1.08996 * 111.01435 * 152.88018 * 13 12 11 39 39 H 1.09001 * 111.01163 * 276.75389 * 13 12 11 40 40 H 1.08993 * 109.47106 * 61.44759 * 16 14 10 41 41 H 1.08995 * 109.46897 * 181.45424 * 16 14 10 42 42 H 1.09006 * 109.46493 * 301.45404 * 16 14 10 43 43 H 1.08994 * 109.48347 * 303.79297 * 17 12 11 44 44 H 1.09004 * 109.47928 * 183.76408 * 17 12 11 45 45 H 1.08998 * 109.59764 * 293.73844 * 18 17 12 46 46 H 1.08993 * 109.72389 * 173.34744 * 18 17 12 47 47 H 0.97000 * 120.00754 * 179.97438 * 23 22 20 48 48 H 1.08995 * 109.59898 * 173.74640 * 28 19 18 49 49 H 1.08998 * 109.59599 * 294.22337 * 28 19 18 50 50 H 1.09004 * 109.48117 * 56.20844 * 29 12 11 51 51 H 1.09005 * 109.48339 * 176.23467 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1667 -1.0779 5 6 2.7110 3.3427 -0.6899 6 8 2.7206 3.3857 0.6461 7 6 2.3011 2.1814 1.0992 8 6 2.1574 1.7750 2.5017 9 8 1.7621 0.6568 2.7737 10 7 2.4632 2.6403 3.4886 11 6 2.9504 4.0167 3.3028 12 6 3.1255 4.6273 4.7024 13 6 2.2122 3.7585 5.5960 14 6 2.3664 2.3649 4.9343 15 1 3.2725 1.8733 5.2882 16 6 1.1414 1.4970 5.2298 17 6 4.5730 4.5123 5.1608 18 6 5.4696 5.3368 4.2297 19 7 4.9440 6.7071 4.1610 20 6 5.7504 7.7772 4.4432 21 1 6.5770 7.6645 5.1292 22 6 5.5022 9.0083 3.8519 23 7 4.7276 9.0845 2.7906 24 14 6.2676 10.5571 4.5625 25 1 7.0903 10.2039 5.7473 26 1 7.1271 11.2002 3.5365 27 1 5.1935 11.4984 4.9692 28 6 3.5367 6.9094 3.7903 29 6 2.6542 6.0751 4.7189 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9966 4.1530 -1.3443 36 1 2.2219 4.5946 2.7342 37 1 3.9066 4.0075 2.7796 38 1 2.5713 3.7442 6.6250 39 1 1.1787 4.1016 5.5491 40 1 1.2396 0.5421 4.7135 41 1 1.0692 1.3240 6.3035 42 1 0.2427 2.0070 4.8826 43 1 4.8818 3.4674 5.1313 44 1 4.6628 4.8894 6.1796 45 1 5.4677 4.8941 3.2337 46 1 6.4872 5.3547 4.6198 47 1 4.5538 9.9448 2.3776 48 1 3.2794 7.9636 3.8933 49 1 3.3809 6.5917 2.7594 50 1 1.6193 6.1244 4.3800 51 1 2.7238 6.4686 5.7330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086941984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:17 Heat of formation + Delta-G solvation = -11.059478 kcal Electronic energy + Delta-G solvation = -32727.221317 eV Core-core repulsion = 28627.894963 eV Total energy + Delta-G solvation = -4099.326355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.52277 -41.74965 -39.84903 -37.63479 -36.67377 -34.78999 -34.06860 -33.14628 -32.58883 -31.58347 -30.52316 -28.78609 -26.99367 -26.12810 -25.55238 -24.60121 -24.04729 -23.27702 -22.57220 -21.67896 -20.66480 -19.88312 -18.60739 -18.32938 -17.97508 -17.61609 -17.15992 -16.84352 -16.35751 -15.96343 -15.78159 -15.48216 -15.37833 -15.06451 -14.91299 -14.77597 -14.59885 -14.33143 -14.24760 -13.91039 -13.72906 -13.32271 -13.26657 -13.10957 -12.99645 -12.82945 -12.59571 -12.52569 -12.44868 -12.38855 -12.19529 -12.06928 -12.01947 -11.92275 -11.91270 -11.82419 -11.45154 -11.08397 -10.97687 -10.85100 -10.49504 -10.17020 -9.69462 -8.62146 -7.84610 -5.29626 -0.26968 1.34640 1.39273 1.46580 1.49741 1.58932 1.92152 1.95696 2.52850 3.05410 3.27252 3.32736 3.47683 3.60442 3.69228 3.77162 3.79637 4.08496 4.19487 4.22742 4.29523 4.31882 4.39269 4.42669 4.47314 4.53639 4.57978 4.64460 4.72383 4.75282 4.78184 4.80372 4.92185 4.95541 4.97891 5.05225 5.07752 5.13869 5.18472 5.19593 5.22637 5.28691 5.31633 5.35705 5.40442 5.50957 5.56285 5.68563 5.80301 6.23347 6.42648 6.47370 6.86348 7.18786 7.90040 8.41115 9.21030 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003347 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.739880 B = 8363.241753 C = 9760.442078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.077 3.923 4 N -0.515 5.515 5 C 0.216 3.784 6 O -0.195 6.195 7 C -0.137 4.137 8 C 0.619 3.381 9 O -0.530 6.530 10 N -0.602 5.602 11 C 0.124 3.876 12 C -0.052 4.052 13 C -0.110 4.110 14 C 0.133 3.867 15 H 0.086 0.914 16 C -0.156 4.156 17 C -0.106 4.106 18 C 0.141 3.859 19 N -0.606 5.606 20 C -0.259 4.259 21 H 0.064 0.936 22 C -0.047 4.047 23 N -0.931 5.931 24 Si 0.961 3.039 25 H -0.268 1.268 26 H -0.295 1.295 27 H -0.291 1.291 28 C 0.179 3.821 29 C -0.113 4.113 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.295 0.705 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.051 0.949 49 H -0.002 1.002 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -15.706 0.256 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.047 4.047 4 N -0.244 5.244 5 C -0.009 4.009 6 O -0.081 6.081 7 C -0.192 4.192 8 C 0.408 3.592 9 O -0.410 6.410 10 N -0.334 5.334 11 C 0.001 3.999 12 C -0.053 4.053 13 C -0.148 4.148 14 C 0.031 3.969 15 H 0.104 0.896 16 C -0.214 4.214 17 C -0.145 4.145 18 C 0.016 3.984 19 N -0.330 5.330 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.243 4.243 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.222 1.222 27 H -0.218 1.218 28 C 0.054 3.946 29 C -0.152 4.152 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.310 0.690 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.016 0.984 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.344 -16.323 -0.303 18.334 hybrid contribution 0.746 1.830 0.223 1.989 sum -7.598 -14.493 -0.081 16.364 Atomic orbital electron populations 1.21576 0.92973 1.03214 1.01176 1.20199 0.97271 0.86824 1.04427 1.22392 0.97101 0.98858 0.86324 1.70385 1.18560 1.04073 1.31364 1.29397 0.94350 0.97824 0.79292 1.84667 1.64586 1.33525 1.25275 1.22950 1.13951 0.85895 0.96398 1.15999 0.78047 0.83998 0.81198 1.90757 1.48759 1.19710 1.81760 1.48608 1.63734 1.13966 1.07109 1.22050 0.98801 0.80709 0.98314 1.20858 0.96296 0.94990 0.93111 1.22950 1.00236 0.91865 0.99739 1.22189 0.99927 0.97004 0.77731 0.89611 1.22100 0.95761 1.00475 1.03015 1.21777 0.93425 0.99512 0.99818 1.21071 0.96211 0.85139 0.96005 1.44251 1.06882 1.01115 1.80740 1.19497 1.10828 0.89396 1.19204 0.91860 1.25710 1.00920 1.01412 0.96234 1.70169 1.42705 1.24014 1.20834 0.85307 0.77631 0.80172 0.77928 1.19256 1.22190 1.21761 1.20495 0.82806 0.98130 0.93202 1.21836 0.98580 0.93903 1.00891 0.92762 0.89721 0.93947 0.88947 0.89001 0.69025 0.92235 0.92152 0.87580 0.89938 0.91154 0.89488 0.93355 0.90875 0.91242 0.97249 0.93060 0.94220 0.93070 0.98417 0.91603 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.89 71.98 0.71 -1.93 16 2 C -0.05 -1.12 5.92 29.85 0.18 -0.94 16 3 C 0.08 2.11 6.41 41.83 0.27 2.38 16 4 N -0.51 -13.45 11.26 -303.12 -3.41 -16.86 16 5 C 0.22 4.88 13.21 130.42 1.72 6.60 16 6 O -0.19 -5.54 8.51 -7.07 -0.06 -5.60 16 7 C -0.14 -4.03 6.98 24.05 0.17 -3.86 16 8 C 0.62 18.44 7.60 86.46 0.66 19.10 16 9 O -0.53 -16.25 12.45 -4.28 -0.05 -16.30 16 10 N -0.60 -16.70 3.25 -793.19 -2.58 -19.27 16 11 C 0.12 3.73 3.76 86.48 0.32 4.05 16 12 C -0.05 -1.47 0.53 -51.92 -0.03 -1.50 16 13 C -0.11 -2.37 5.41 31.81 0.17 -2.20 16 14 C 0.13 3.01 3.44 45.50 0.16 3.17 16 15 H 0.09 1.85 7.76 -2.39 -0.02 1.83 16 16 C -0.16 -3.24 8.71 71.98 0.63 -2.61 16 17 C -0.11 -3.18 4.78 30.46 0.15 -3.03 16 18 C 0.14 5.51 6.23 86.40 0.54 6.05 16 19 N -0.61 -28.79 2.99 -699.46 -2.09 -30.88 16 20 C -0.26 -13.73 9.57 84.03 0.80 -12.93 16 21 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 22 C -0.05 -2.55 4.91 84.86 0.42 -2.14 16 23 N -0.93 -53.24 11.20 21.65 0.24 -53.00 16 24 Si 0.96 43.76 29.59 68.60 2.03 45.79 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 28 C 0.18 8.07 5.02 86.26 0.43 8.51 16 29 C -0.11 -3.80 4.69 30.31 0.14 -3.66 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.22 6.47 -2.39 -0.02 2.20 16 35 H 0.29 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.06 1.94 7.12 -2.39 -0.02 1.92 16 37 H 0.06 2.05 5.77 -2.39 -0.01 2.04 16 38 H 0.11 1.89 8.01 -2.39 -0.02 1.87 16 39 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 40 H 0.07 1.72 5.89 -2.39 -0.01 1.70 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.07 1.89 7.49 -2.39 -0.02 1.87 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.01 0.39 6.53 -2.39 -0.02 0.38 16 46 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 47 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 48 H 0.05 2.67 6.05 -2.39 -0.01 2.66 16 49 H 0.00 -0.11 7.47 -2.39 -0.02 -0.13 16 50 H 0.07 2.02 8.10 -2.38 -0.02 2.00 16 51 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -66.26 389.52 2.45 -63.82 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.93 Total: 17.26 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.44 Total: 15.06 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -7.83 Total: -120.01 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.11 Total: -21.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.26 2.45 -63.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086941984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.759 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds