Wall clock time and date at job start Wed Apr 1 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47220 * 2 1 4 4 O 1.34259 * 126.52715 * 270.02276 * 3 2 1 5 5 C 1.34046 * 108.22634 * 179.97438 * 4 3 2 6 6 N 1.29932 * 109.24662 * 359.97438 * 5 4 3 7 7 C 1.36072 * 108.47811 * 359.76460 * 6 5 4 8 8 C 1.47417 * 126.45235 * 180.28185 * 7 6 5 9 9 O 1.21613 * 119.99838 * 180.11572 * 8 7 6 10 10 N 1.34776 * 119.99669 * 0.12677 * 8 7 6 11 11 C 1.46503 * 119.99691 * 179.97438 * 10 8 7 12 12 H 1.09005 * 113.22440 * 28.29355 * 11 10 8 13 13 C 1.50000 * 114.12355 * 255.49239 * 11 10 8 14 14 H 1.09003 * 112.50335 * 170.16595 * 13 11 10 15 15 C 1.51199 * 126.17665 * 26.65671 * 13 11 10 16 16 C 1.54098 * 106.19591 * 198.56943 * 15 13 11 17 17 C 1.52501 * 112.66336 * 55.44348 * 16 15 13 18 18 N 1.48406 * 111.87326 * 313.20823 * 17 16 15 19 19 C 1.36939 * 123.16727 * 231.82556 * 18 17 16 20 20 H 1.07996 * 120.00244 * 153.32539 * 19 18 17 21 21 C 1.38822 * 119.99790 * 333.32432 * 19 18 17 22 22 N 1.31612 * 119.99962 * 348.87777 * 21 19 18 23 23 Si 1.86801 * 119.99776 * 168.87439 * 21 19 18 24 24 H 1.48501 * 109.46903 * 60.00400 * 23 21 19 25 25 H 1.48494 * 109.47005 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47000 * 300.00258 * 23 21 19 27 27 C 1.46251 * 112.70040 * 52.48057 * 18 17 16 28 28 H 1.09000 * 113.59412 * 58.72351 * 27 18 17 29 29 C 1.49965 * 125.18400 * 203.17398 * 27 18 17 30 30 C 1.53006 * 114.08527 * 25.06988 * 29 27 18 31 31 C 1.53001 * 114.08905 * 252.64297 * 29 27 18 32 32 H 1.08995 * 109.46996 * 300.00491 * 1 2 3 33 33 H 1.09004 * 109.46604 * 60.00029 * 1 2 3 34 34 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47301 * 120.00231 * 2 1 3 36 36 H 1.09007 * 109.47428 * 240.00049 * 2 1 3 37 37 H 1.08000 * 125.37709 * 179.97438 * 5 4 3 38 38 H 0.96998 * 120.00259 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.10408 * 317.74268 * 15 13 11 40 40 H 1.09003 * 110.09811 * 79.40624 * 15 13 11 41 41 H 1.08997 * 108.83952 * 176.25990 * 16 15 13 42 42 H 1.08991 * 108.84327 * 294.72520 * 16 15 13 43 43 H 1.08998 * 109.00563 * 73.82695 * 17 16 15 44 44 H 1.09006 * 108.99747 * 192.67148 * 17 16 15 45 45 H 0.97001 * 120.00322 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.47058 * 145.44342 * 30 29 27 47 47 H 1.08999 * 109.46749 * 265.43803 * 30 29 27 48 48 H 1.08997 * 109.46969 * 25.43845 * 30 29 27 49 49 H 1.09003 * 109.46842 * 306.08464 * 31 29 27 50 50 H 1.08997 * 109.46915 * 66.07509 * 31 29 27 51 51 H 1.08998 * 109.47519 * 186.07993 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2983 2.1744 -1.0789 5 6 2.7222 3.3744 -0.6580 6 7 2.7290 3.3947 0.6412 7 6 2.2963 2.1866 1.0937 8 6 2.1449 1.7822 2.5032 9 8 1.7480 0.6656 2.7762 10 7 2.4460 2.6503 3.4893 11 6 2.2949 2.2486 4.8901 12 1 2.4181 1.1768 5.0456 13 6 1.0913 2.8323 5.5688 14 1 0.9075 2.3879 6.5470 15 6 -0.1912 3.2649 4.8948 16 6 -0.9033 4.2034 5.8882 17 6 -0.0268 5.3731 6.3230 18 7 1.3385 4.9304 6.7006 19 6 1.9327 5.2647 7.8882 20 1 2.6876 4.6207 8.3145 21 6 1.5648 6.4315 8.5442 22 7 0.8147 7.3225 7.9314 23 14 2.1344 6.7369 10.2969 24 1 3.6187 6.7544 10.3390 25 1 1.6099 8.0441 10.7671 26 1 1.6269 5.6546 11.1780 27 6 1.9754 4.1184 5.6644 28 1 2.0690 4.6291 4.7060 29 6 3.0856 3.1373 5.8960 30 6 3.1364 2.5762 7.3186 31 6 4.4486 3.6032 5.3800 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 3.0122 4.1947 -1.2977 38 1 2.7627 3.5408 3.2715 39 1 0.0325 3.7977 3.9706 40 1 -0.8161 2.3965 4.6863 41 1 -1.8051 4.5951 5.4176 42 1 -1.1876 3.6311 6.7711 43 1 0.0459 6.0866 5.5022 44 1 -0.4891 5.8638 7.1795 45 1 0.5572 8.1376 8.3898 46 1 3.4700 1.5389 7.2883 47 1 3.8325 3.1644 7.9165 48 1 2.1429 2.6255 7.7642 49 1 4.3644 3.8777 4.3285 50 1 4.7788 4.4678 5.9558 51 1 5.1733 2.7963 5.4881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087277147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:04 Heat of formation + Delta-G solvation = 53.824514 kcal Electronic energy + Delta-G solvation = -32669.523301 eV Core-core repulsion = 28573.010527 eV Total energy + Delta-G solvation = -4096.512774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.62358 -41.13645 -38.74594 -35.26719 -35.02143 -34.33286 -33.20094 -32.76643 -30.15646 -29.51377 -29.18116 -27.11841 -25.89321 -25.21941 -24.13571 -23.61005 -22.33984 -21.78625 -20.58288 -20.38469 -19.15954 -18.39015 -17.87911 -17.01648 -16.68744 -16.27402 -15.60358 -15.05013 -14.92254 -14.76550 -14.55872 -14.02536 -13.95212 -13.76455 -13.69213 -13.54961 -13.30004 -12.83097 -12.70064 -12.50791 -12.34475 -12.03614 -11.96506 -11.73784 -11.53171 -11.44125 -11.28573 -11.09825 -11.04426 -10.89240 -10.80820 -10.62041 -10.37987 -10.22619 -10.04352 -9.96952 -9.84860 -9.81929 -9.23327 -9.14525 -8.82546 -8.60631 -8.36979 -6.52349 -5.71325 -3.16229 0.95158 1.92232 2.35531 3.19949 3.33162 3.39373 3.45243 3.45497 3.89083 4.37542 4.50757 4.68609 4.73785 4.85870 4.98121 5.02597 5.08701 5.22684 5.33156 5.33381 5.50172 5.56981 5.61423 5.62355 5.81729 5.84071 5.87638 5.91359 5.97109 5.99053 6.04647 6.08557 6.10164 6.31508 6.33292 6.42050 6.44448 6.54080 6.63261 6.66753 6.69517 6.79465 6.85368 6.93991 7.07904 7.17625 7.26316 7.47464 7.71629 7.75586 7.84767 8.29724 8.45131 9.21703 9.86671 10.55402 11.35754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.003032 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.904885 B = 9234.121730 C = 9345.594525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.042 3.958 4 O -0.201 6.201 5 C 0.172 3.828 6 N -0.461 5.461 7 C -0.071 4.071 8 C 0.603 3.397 9 O -0.537 6.537 10 N -0.683 5.683 11 C 0.140 3.860 12 H 0.096 0.904 13 C -0.169 4.169 14 H 0.102 0.898 15 C -0.083 4.083 16 C -0.135 4.135 17 C 0.164 3.836 18 N -0.570 5.570 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.001 4.001 22 N -0.908 5.908 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.284 1.284 27 C 0.147 3.853 28 H 0.048 0.952 29 C -0.068 4.068 30 C -0.116 4.116 31 C -0.134 4.134 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.409 0.591 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.012 0.988 44 H 0.093 0.907 45 H 0.253 0.747 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.063 0.937 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -11.708 -16.508 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.015 4.015 4 O -0.087 6.087 5 C -0.056 4.056 6 N -0.189 5.189 7 C -0.191 4.191 8 C 0.388 3.612 9 O -0.415 6.415 10 N -0.333 5.333 11 C 0.035 3.965 12 H 0.114 0.886 13 C -0.190 4.190 14 H 0.120 0.880 15 C -0.121 4.121 16 C -0.174 4.174 17 C 0.039 3.961 18 N -0.292 5.292 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.199 4.199 22 N -0.553 5.553 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.211 1.211 27 C 0.038 3.962 28 H 0.065 0.935 29 C -0.069 4.069 30 C -0.173 4.173 31 C -0.191 4.191 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.270 0.730 38 H 0.247 0.753 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.442 -11.761 -15.792 19.841 hybrid contribution 0.278 0.699 0.148 0.767 sum 2.720 -11.062 -15.644 19.352 Atomic orbital electron populations 1.21707 0.93021 1.02888 1.02578 1.20379 0.97156 0.85379 1.05305 1.23806 0.98728 0.95595 0.83342 1.84368 1.63818 1.24196 1.36341 1.28013 0.99299 0.87061 0.91275 1.70778 1.16853 1.21159 1.10150 1.21572 1.10343 0.91407 0.95762 1.16637 0.77587 0.84548 0.82394 1.90762 1.47262 1.20289 1.83163 1.45531 1.65623 1.16933 1.05200 1.21594 0.97493 0.98430 0.79023 0.88610 1.23304 0.94655 1.01104 0.99962 0.88043 1.21016 0.95801 0.97566 0.97705 1.22106 0.98456 0.98968 0.97918 1.20877 0.84362 0.91284 0.99599 1.44165 1.10327 1.60780 1.13928 1.19277 1.19826 1.01939 0.95777 0.90563 1.25134 1.00610 0.95284 0.98902 1.69937 1.40408 1.09080 1.35919 0.86390 0.78397 0.77086 0.85015 1.21006 1.21776 1.21079 1.21985 0.92028 0.89812 0.92328 0.93518 1.21897 0.94006 0.95844 0.95193 1.21650 1.03668 0.98529 0.93501 1.21684 0.96107 1.01039 1.00318 0.91547 0.92715 0.91074 0.86431 0.89914 0.72986 0.75327 0.93302 0.94122 0.93540 0.93203 0.97023 0.88912 0.93731 0.93857 0.91811 0.90429 0.93303 0.91765 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.04 -0.43 5.92 -27.88 -0.17 -0.59 16 3 C 0.04 0.48 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -2.02 10.73 6.51 0.07 -1.96 16 5 C 0.17 1.56 13.19 51.96 0.69 2.24 16 6 N -0.46 -5.87 11.06 -11.48 -0.13 -6.00 16 7 C -0.07 -0.97 6.99 -83.02 -0.58 -1.56 16 8 C 0.60 9.36 7.81 -12.52 -0.10 9.26 16 9 O -0.54 -9.04 14.48 5.27 0.08 -8.97 16 10 N -0.68 -10.59 4.31 -58.74 -0.25 -10.84 16 11 C 0.14 2.29 3.90 -71.83 -0.28 2.01 16 12 H 0.10 1.58 7.60 -51.93 -0.39 1.18 16 13 C -0.17 -3.07 2.99 -95.82 -0.29 -3.36 16 14 H 0.10 1.95 6.11 -51.93 -0.32 1.63 16 15 C -0.08 -1.52 5.91 -27.07 -0.16 -1.68 16 16 C -0.14 -2.67 5.90 -26.41 -0.16 -2.83 16 17 C 0.16 3.90 5.29 -3.25 -0.02 3.89 16 18 N -0.57 -13.70 2.83 -168.74 -0.48 -14.18 16 19 C -0.24 -6.22 9.03 -15.05 -0.14 -6.36 16 20 H 0.08 1.90 5.11 -52.49 -0.27 1.63 16 21 C 0.00 -0.04 5.16 -17.43 -0.09 -0.13 16 22 N -0.91 -26.02 10.93 55.49 0.61 -25.41 16 23 Si 0.90 21.45 29.57 -169.99 -5.03 16.43 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.15 2.94 2.98 -71.66 -0.21 2.73 16 28 H 0.05 0.99 6.52 -51.93 -0.34 0.65 16 29 C -0.07 -1.16 1.38 -159.13 -0.22 -1.38 16 30 C -0.12 -1.96 7.25 37.16 0.27 -1.69 16 31 C -0.13 -2.09 9.10 37.16 0.34 -1.76 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.12 1.26 6.50 -51.93 -0.34 0.92 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.25 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.41 6.35 5.90 -40.82 -0.24 6.11 16 39 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 2.48 6.03 -51.93 -0.31 2.17 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 1.11 7.05 -51.93 -0.37 0.74 16 48 H 0.08 1.45 5.57 -51.93 -0.29 1.16 16 49 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -30.90 391.28 -8.03 -38.93 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.82 Total: 7.98 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.98 Total: -1.89 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.25 Total: -56.43 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.15 Total: -10.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.90 -8.03 -38.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087277147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.758 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds