Wall clock time and date at job start Wed Apr 1 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47220 * 2 1 4 4 O 1.34259 * 126.52715 * 270.02276 * 3 2 1 5 5 C 1.34046 * 108.22634 * 179.97438 * 4 3 2 6 6 N 1.29932 * 109.24662 * 359.97438 * 5 4 3 7 7 C 1.36072 * 108.47811 * 359.76460 * 6 5 4 8 8 C 1.47417 * 126.45235 * 180.28185 * 7 6 5 9 9 O 1.21613 * 119.99838 * 180.11572 * 8 7 6 10 10 N 1.34776 * 119.99669 * 0.12677 * 8 7 6 11 11 C 1.46503 * 119.99691 * 179.97438 * 10 8 7 12 12 H 1.09005 * 113.22440 * 28.29355 * 11 10 8 13 13 C 1.50000 * 114.12355 * 255.49239 * 11 10 8 14 14 H 1.09003 * 112.50335 * 170.16595 * 13 11 10 15 15 C 1.51199 * 126.17665 * 26.65671 * 13 11 10 16 16 C 1.54098 * 106.19591 * 198.56943 * 15 13 11 17 17 C 1.52501 * 112.66336 * 55.44348 * 16 15 13 18 18 N 1.48406 * 111.87326 * 313.20823 * 17 16 15 19 19 C 1.36939 * 123.16727 * 231.82556 * 18 17 16 20 20 H 1.07996 * 120.00244 * 153.32539 * 19 18 17 21 21 C 1.38822 * 119.99790 * 333.32432 * 19 18 17 22 22 N 1.31612 * 119.99962 * 348.87777 * 21 19 18 23 23 Si 1.86801 * 119.99776 * 168.87439 * 21 19 18 24 24 H 1.48501 * 109.46903 * 60.00400 * 23 21 19 25 25 H 1.48494 * 109.47005 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47000 * 300.00258 * 23 21 19 27 27 C 1.46251 * 112.70040 * 52.48057 * 18 17 16 28 28 H 1.09000 * 113.59412 * 58.72351 * 27 18 17 29 29 C 1.49965 * 125.18400 * 203.17398 * 27 18 17 30 30 C 1.53006 * 114.08527 * 25.06988 * 29 27 18 31 31 C 1.53001 * 114.08905 * 252.64297 * 29 27 18 32 32 H 1.08995 * 109.46996 * 300.00491 * 1 2 3 33 33 H 1.09004 * 109.46604 * 60.00029 * 1 2 3 34 34 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47301 * 120.00231 * 2 1 3 36 36 H 1.09007 * 109.47428 * 240.00049 * 2 1 3 37 37 H 1.08000 * 125.37709 * 179.97438 * 5 4 3 38 38 H 0.96998 * 120.00259 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.10408 * 317.74268 * 15 13 11 40 40 H 1.09003 * 110.09811 * 79.40624 * 15 13 11 41 41 H 1.08997 * 108.83952 * 176.25990 * 16 15 13 42 42 H 1.08991 * 108.84327 * 294.72520 * 16 15 13 43 43 H 1.08998 * 109.00563 * 73.82695 * 17 16 15 44 44 H 1.09006 * 108.99747 * 192.67148 * 17 16 15 45 45 H 0.97001 * 120.00322 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.47058 * 145.44342 * 30 29 27 47 47 H 1.08999 * 109.46749 * 265.43803 * 30 29 27 48 48 H 1.08997 * 109.46969 * 25.43845 * 30 29 27 49 49 H 1.09003 * 109.46842 * 306.08464 * 31 29 27 50 50 H 1.08997 * 109.46915 * 66.07509 * 31 29 27 51 51 H 1.08998 * 109.47519 * 186.07993 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2983 2.1744 -1.0789 5 6 2.7222 3.3744 -0.6580 6 7 2.7290 3.3947 0.6412 7 6 2.2963 2.1866 1.0937 8 6 2.1449 1.7822 2.5032 9 8 1.7480 0.6656 2.7762 10 7 2.4460 2.6503 3.4893 11 6 2.2949 2.2486 4.8901 12 1 2.4181 1.1768 5.0456 13 6 1.0913 2.8323 5.5688 14 1 0.9075 2.3879 6.5470 15 6 -0.1912 3.2649 4.8948 16 6 -0.9033 4.2034 5.8882 17 6 -0.0268 5.3731 6.3230 18 7 1.3385 4.9304 6.7006 19 6 1.9327 5.2647 7.8882 20 1 2.6876 4.6207 8.3145 21 6 1.5648 6.4315 8.5442 22 7 0.8147 7.3225 7.9314 23 14 2.1344 6.7369 10.2969 24 1 3.6187 6.7544 10.3390 25 1 1.6099 8.0441 10.7671 26 1 1.6269 5.6546 11.1780 27 6 1.9754 4.1184 5.6644 28 1 2.0690 4.6291 4.7060 29 6 3.0856 3.1373 5.8960 30 6 3.1364 2.5762 7.3186 31 6 4.4486 3.6032 5.3800 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 3.0122 4.1947 -1.2977 38 1 2.7627 3.5408 3.2715 39 1 0.0325 3.7977 3.9706 40 1 -0.8161 2.3965 4.6863 41 1 -1.8051 4.5951 5.4176 42 1 -1.1876 3.6311 6.7711 43 1 0.0459 6.0866 5.5022 44 1 -0.4891 5.8638 7.1795 45 1 0.5572 8.1376 8.3898 46 1 3.4700 1.5389 7.2883 47 1 3.8325 3.1644 7.9165 48 1 2.1429 2.6255 7.7642 49 1 4.3644 3.8777 4.3285 50 1 4.7788 4.4678 5.9558 51 1 5.1733 2.7963 5.4881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087277147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:03 Heat of formation + Delta-G solvation = 33.751020 kcal Electronic energy + Delta-G solvation = -32670.393753 eV Core-core repulsion = 28573.010527 eV Total energy + Delta-G solvation = -4097.383226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.44832 -42.59307 -39.99348 -36.93769 -35.91744 -35.13937 -34.78808 -34.26054 -32.00786 -30.83178 -30.23839 -28.50435 -27.54745 -26.69485 -25.26128 -24.51603 -23.96890 -22.78017 -22.08041 -21.56115 -20.67317 -19.73136 -19.06922 -18.50594 -17.84505 -17.27036 -16.79135 -16.67003 -16.01924 -15.96972 -15.69619 -15.62627 -15.36394 -15.28064 -14.97907 -14.77098 -14.42850 -14.29210 -14.09954 -13.93957 -13.62008 -13.54766 -13.20248 -12.88683 -12.81844 -12.74621 -12.67160 -12.47907 -12.38668 -12.29549 -12.19054 -12.10379 -11.92802 -11.76195 -11.66925 -11.60351 -11.39765 -11.13376 -10.92218 -10.57577 -10.25154 -10.11716 -9.83297 -8.48638 -7.75473 -5.22937 0.05465 1.06640 1.48501 1.50219 1.55808 1.56661 2.06933 2.23623 2.54952 3.11292 3.25679 3.39689 3.47546 3.57071 3.71148 3.76945 3.93166 4.10470 4.11851 4.23710 4.25707 4.31688 4.35838 4.48406 4.54469 4.58498 4.62212 4.71068 4.76114 4.80871 4.85646 4.95542 4.96496 5.02750 5.09814 5.11155 5.13690 5.15387 5.20089 5.23211 5.28399 5.30660 5.32595 5.50477 5.53825 5.56662 5.74436 5.77137 5.81988 6.31518 6.43847 6.60015 7.09948 7.17614 7.89027 8.56699 9.29341 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.003032 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.904885 B = 9234.121730 C = 9345.594525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.049 3.951 4 O -0.196 6.196 5 C 0.195 3.805 6 N -0.499 5.499 7 C -0.103 4.103 8 C 0.602 3.398 9 O -0.554 6.554 10 N -0.683 5.683 11 C 0.157 3.843 12 H 0.103 0.897 13 C -0.157 4.157 14 H 0.095 0.905 15 C -0.075 4.075 16 C -0.125 4.125 17 C 0.172 3.828 18 N -0.585 5.585 19 C -0.235 4.235 20 H 0.088 0.912 21 C -0.060 4.060 22 N -0.943 5.943 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.301 1.301 26 H -0.278 1.278 27 C 0.132 3.868 28 H 0.037 0.963 29 C -0.064 4.064 30 C -0.112 4.112 31 C -0.129 4.129 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.303 0.697 38 H 0.409 0.591 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.049 0.951 43 H -0.016 1.016 44 H 0.060 0.940 45 H 0.244 0.756 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.048 0.952 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -13.701 -18.298 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.009 4.009 4 O -0.083 6.083 5 C -0.034 4.034 6 N -0.228 5.228 7 C -0.221 4.221 8 C 0.389 3.611 9 O -0.433 6.433 10 N -0.333 5.333 11 C 0.051 3.949 12 H 0.121 0.879 13 C -0.179 4.179 14 H 0.113 0.887 15 C -0.113 4.113 16 C -0.164 4.164 17 C 0.046 3.954 18 N -0.307 5.307 19 C -0.365 4.365 20 H 0.105 0.895 21 C -0.254 4.254 22 N -0.591 5.591 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.228 1.228 26 H -0.204 1.204 27 C 0.025 3.975 28 H 0.055 0.945 29 C -0.065 4.065 30 C -0.170 4.170 31 C -0.186 4.186 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.317 0.683 38 H 0.246 0.754 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.002 0.998 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.482 -13.786 -17.588 22.617 hybrid contribution -0.033 1.314 0.567 1.431 sum 3.448 -12.472 -17.021 21.381 Atomic orbital electron populations 1.21678 0.92646 1.03808 1.01628 1.20459 0.97337 0.84398 1.06016 1.24107 0.97471 0.96165 0.83110 1.84411 1.63734 1.24493 1.35651 1.29119 0.96228 0.87231 0.90782 1.70744 1.18765 1.21205 1.12055 1.21402 1.12822 0.92692 0.95214 1.16899 0.76844 0.84163 0.83183 1.90742 1.48008 1.20897 1.83702 1.45484 1.65932 1.17014 1.04851 1.21363 0.95653 0.98460 0.79403 0.87874 1.23243 0.94754 0.99803 1.00055 0.88706 1.20921 0.96007 0.97498 0.96847 1.21939 0.98259 0.97703 0.98474 1.20671 0.85188 0.92317 0.97176 1.44352 1.10868 1.60863 1.14572 1.19692 1.18929 1.01474 0.96410 0.89491 1.25845 1.01629 0.95534 1.02377 1.70123 1.42407 1.09449 1.37137 0.85432 0.78159 0.76376 0.81077 1.20174 1.22787 1.20434 1.22181 0.94742 0.89800 0.90806 0.94546 1.21917 0.94083 0.94645 0.95869 1.21583 1.02331 1.00274 0.92786 1.21630 0.95600 1.01156 1.00219 0.94243 0.91797 0.89279 0.87800 0.87059 0.68265 0.75387 0.93830 0.92578 0.91953 0.93181 0.99750 0.92199 0.94635 0.90854 0.92477 0.92495 0.92816 0.93324 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.04 -0.76 5.92 29.85 0.18 -0.59 16 3 C 0.05 1.04 6.69 25.19 0.17 1.21 16 4 O -0.20 -3.41 10.73 0.39 0.00 -3.40 16 5 C 0.19 2.97 13.19 130.52 1.72 4.69 16 6 N -0.50 -11.98 11.06 -305.15 -3.37 -15.35 16 7 C -0.10 -2.72 6.99 40.41 0.28 -2.43 16 8 C 0.60 18.25 7.81 86.66 0.68 18.92 16 9 O -0.55 -18.22 14.48 -4.07 -0.06 -18.28 16 10 N -0.68 -20.69 4.31 -458.00 -1.97 -22.67 16 11 C 0.16 4.95 3.90 42.46 0.17 5.11 16 12 H 0.10 3.19 7.60 -2.38 -0.02 3.17 16 13 C -0.16 -5.63 2.99 -14.16 -0.04 -5.68 16 14 H 0.09 3.58 6.11 -2.39 -0.01 3.56 16 15 C -0.08 -2.71 5.91 30.38 0.18 -2.53 16 16 C -0.12 -4.97 5.90 30.80 0.18 -4.79 16 17 C 0.17 8.52 5.29 85.85 0.45 8.97 16 18 N -0.58 -28.76 2.83 -687.78 -1.95 -30.71 16 19 C -0.24 -12.45 9.03 84.04 0.76 -11.69 16 20 H 0.09 4.34 5.11 -2.91 -0.01 4.33 16 21 C -0.06 -3.33 5.16 84.87 0.44 -2.89 16 22 N -0.94 -56.25 10.93 21.65 0.24 -56.02 16 23 Si 0.96 44.96 29.57 68.60 2.03 46.99 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.13 5.32 2.98 42.71 0.13 5.45 16 28 H 0.04 1.58 6.52 -2.39 -0.02 1.56 16 29 C -0.06 -2.12 1.38 -55.18 -0.08 -2.20 16 30 C -0.11 -3.63 7.25 71.98 0.52 -3.11 16 31 C -0.13 -3.85 9.10 71.98 0.66 -3.20 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 2.10 6.50 -2.38 -0.02 2.08 16 36 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.30 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.41 12.58 5.90 -92.71 -0.55 12.03 16 39 H 0.04 1.62 7.91 -2.39 -0.02 1.60 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.06 3.36 6.03 -2.38 -0.01 3.35 16 45 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.06 1.90 7.05 -2.39 -0.02 1.89 16 48 H 0.06 2.08 5.57 -2.39 -0.01 2.07 16 49 H 0.05 1.54 6.43 -2.39 -0.02 1.52 16 50 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -69.37 391.28 2.43 -66.94 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.41 Total: 28.81 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 7.10 Total: 3.69 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -7.06 Total: -124.75 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.37 2.43 -66.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087277147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.693 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds