Wall clock time and date at job start Wed Apr 1 2020 06:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50701 * 109.47084 * 2 1
4 4 N 1.33698 * 126.27766 * 90.02128 * 3 2 1
5 5 C 1.30614 * 108.99644 * 179.97438 * 4 3 2
6 6 O 1.33666 * 109.15459 * 359.97438 * 5 4 3
7 7 C 1.35341 * 107.68391 * 359.76200 * 6 5 4
8 8 C 1.46727 * 126.64132 * 180.26356 * 7 6 5
9 9 O 1.21689 * 119.99601 * 180.13801 * 8 7 6
10 10 N 1.34771 * 120.00310 * 0.14247 * 8 7 6
11 11 C 1.46497 * 120.00490 * 180.02562 * 10 8 7
12 12 H 1.09009 * 113.22141 * 28.29590 * 11 10 8
13 13 C 1.50006 * 114.12511 * 255.49637 * 11 10 8
14 14 H 1.09002 * 112.50666 * 322.39696 * 13 11 10
15 15 C 1.51207 * 126.16487 * 104.79942 * 13 11 10
16 16 C 1.55140 * 105.66976 * 161.77215 * 15 13 11
17 17 C 1.52495 * 112.60054 * 304.24698 * 16 15 13
18 18 N 1.48408 * 111.86605 * 46.99146 * 17 16 15
19 19 C 1.36938 * 123.16965 * 128.16009 * 18 17 16
20 20 H 1.08002 * 119.99862 * 207.36604 * 19 18 17
21 21 C 1.38807 * 119.99868 * 27.35946 * 19 18 17
22 22 N 1.31625 * 120.00082 * 11.20443 * 21 19 18
23 23 Si 1.86798 * 120.00128 * 191.19647 * 21 19 18
24 24 H 1.48498 * 109.47322 * 0.02562 * 23 21 19
25 25 H 1.48506 * 109.46905 * 120.00479 * 23 21 19
26 26 H 1.48501 * 109.47560 * 240.00354 * 23 21 19
27 27 C 1.45383 * 113.66433 * 308.16615 * 18 17 16
28 28 H 1.09004 * 112.08435 * 300.24998 * 27 18 17
29 29 C 1.49962 * 126.22636 * 155.82208 * 27 18 17
30 30 C 1.53005 * 114.07824 * 106.76083 * 29 27 18
31 31 C 1.52995 * 114.08744 * 334.33993 * 29 27 18
32 32 H 1.09001 * 109.47009 * 60.00596 * 1 2 3
33 33 H 1.09000 * 109.47060 * 179.97438 * 1 2 3
34 34 H 1.08994 * 109.47341 * 300.00294 * 1 2 3
35 35 H 1.09001 * 109.47009 * 119.99404 * 2 1 3
36 36 H 1.08995 * 109.47805 * 239.99953 * 2 1 3
37 37 H 1.07998 * 125.42100 * 180.02562 * 5 4 3
38 38 H 0.97003 * 119.99775 * 359.97438 * 10 8 7
39 39 H 1.08998 * 110.10121 * 280.57730 * 15 13 11
40 40 H 1.09003 * 110.09735 * 42.23245 * 15 13 11
41 41 H 1.09003 * 108.71957 * 183.55810 * 16 15 13
42 42 H 1.08999 * 108.96221 * 65.10572 * 16 15 13
43 43 H 1.09002 * 109.00174 * 286.37789 * 17 16 15
44 44 H 1.08996 * 109.00742 * 167.60731 * 17 16 15
45 45 H 0.96997 * 120.00367 * 179.97438 * 22 21 19
46 46 H 1.09001 * 109.46825 * 173.92708 * 30 29 27
47 47 H 1.09006 * 109.47229 * 293.92245 * 30 29 27
48 48 H 1.08997 * 109.47489 * 53.91925 * 30 29 27
49 49 H 1.09003 * 109.46914 * 332.80657 * 31 29 27
50 50 H 1.09007 * 109.47140 * 92.80220 * 31 29 27
51 51 H 1.08996 * 109.46911 * 212.80634 * 31 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2964 2.1665 1.0778
5 6 2.7125 3.3423 0.6898
6 8 2.7274 3.3833 -0.6461
7 6 2.3073 2.1792 -1.0992
8 6 2.1709 1.7702 -2.5017
9 8 1.7770 0.6514 -2.7736
10 7 2.4819 2.6336 -3.4887
11 6 2.3452 2.2255 -4.8890
12 1 1.5749 1.4698 -5.0433
13 6 3.6473 1.9213 -5.5689
14 1 4.4467 2.5948 -5.2599
15 6 4.1813 0.5458 -5.8994
16 6 5.2756 0.7688 -6.9764
17 6 4.7539 1.5236 -8.1944
18 7 3.9628 2.7181 -7.8074
19 6 4.2035 3.9702 -8.3069
20 1 3.9473 4.8426 -7.7240
21 6 4.7770 4.1182 -9.5623
22 7 4.8871 3.0787 -10.3622
23 14 5.3924 5.7925 -10.1166
24 1 5.1545 6.7883 -9.0410
25 1 6.8470 5.7145 -10.4054
26 1 4.6656 6.2057 -11.3439
27 6 2.9082 2.4338 -6.8479
28 1 2.1907 1.7080 -7.2307
29 6 2.2888 3.4129 -5.8958
30 6 0.8703 3.8418 -6.2764
31 6 3.1982 4.5870 -5.5280
32 1 -0.3633 0.5137 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 1.8933 -0.5137 0.8900
36 1 1.8934 -0.5138 -0.8899
37 1 2.9996 4.1520 1.3442
38 1 2.7956 3.5255 -3.2719
39 1 4.6187 0.0903 -5.0110
40 1 3.3808 -0.0832 -6.2888
41 1 5.6523 -0.2019 -7.2986
42 1 6.0958 1.3356 -6.5358
43 1 4.1240 0.8561 -8.7826
44 1 5.5995 1.8405 -8.8047
45 1 5.2874 3.1821 -11.2396
46 1 0.4540 4.4641 -5.4842
47 1 0.8996 4.4093 -7.2066
48 1 0.2468 2.9578 -6.4097
49 1 4.2406 4.2804 -5.6156
50 1 3.0067 5.4205 -6.2039
51 1 2.9953 4.8965 -4.5028
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087302994.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:03:48
Heat of formation + Delta-G solvation = 47.419309 kcal
Electronic energy + Delta-G solvation = -32349.557870 eV
Core-core repulsion = 28252.767346 eV
Total energy + Delta-G solvation = -4096.790524 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-43.67641 -41.05998 -38.95582 -36.02050 -35.28462 -33.36699 -33.12207 -32.97268
-30.35879 -29.79071 -29.34625 -27.34165 -25.92592 -25.29580 -24.13826 -23.65792
-22.36669 -21.54274 -20.73298 -20.24836 -19.35898 -18.83880 -17.89049 -17.08197
-16.80146 -16.58431 -15.88061 -15.08014 -14.88084 -14.80471 -14.37582 -14.15976
-14.07125 -13.94731 -13.57675 -13.50639 -13.15432 -12.88856 -12.77065 -12.67485
-12.50002 -11.95307 -11.82938 -11.72749 -11.38498 -11.36456 -11.26421 -11.18095
-11.07442 -11.06280 -10.89366 -10.79852 -10.46685 -10.33042 -10.15623 -10.09549
-9.98006 -9.90174 -9.41905 -9.22834 -8.90756 -8.70902 -8.45147 -6.59143
-5.77321 -3.22342 0.63210 2.19663 2.26103 3.00619 3.17696 3.34077
3.41539 3.43104 3.76810 4.45200 4.46080 4.57773 4.62684 4.91764
5.08072 5.10741 5.16102 5.19855 5.23867 5.29559 5.41237 5.50427
5.54302 5.76008 5.78166 5.79728 5.84031 5.88132 5.94218 5.97833
6.01415 6.04816 6.11589 6.15941 6.25520 6.32706 6.35533 6.42400
6.53353 6.57758 6.63069 6.69146 6.73727 6.82969 7.00738 7.08991
7.24629 7.41250 7.51864 7.69683 7.79810 8.04244 8.40784 9.16807
9.82115 10.47791 11.30593
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017923 B = 0.002914 C = 0.002753
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1561.855819 B = 9605.011459 C =10169.511410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.052 4.052
3 C 0.078 3.922
4 N -0.492 5.492
5 C 0.196 3.804
6 O -0.191 6.191
7 C -0.107 4.107
8 C 0.605 3.395
9 O -0.513 6.513
10 N -0.698 5.698
11 C 0.140 3.860
12 H 0.115 0.885
13 C -0.169 4.169
14 H 0.093 0.907
15 C -0.089 4.089
16 C -0.135 4.135
17 C 0.166 3.834
18 N -0.569 5.569
19 C -0.242 4.242
20 H 0.077 0.923
21 C 0.000 4.000
22 N -0.906 5.906
23 Si 0.900 3.100
24 H -0.278 1.278
25 H -0.291 1.291
26 H -0.291 1.291
27 C 0.154 3.846
28 H 0.052 0.948
29 C -0.065 4.065
30 C -0.133 4.133
31 C -0.121 4.121
32 H 0.058 0.942
33 H 0.064 0.936
34 H 0.052 0.948
35 H 0.080 0.920
36 H 0.102 0.898
37 H 0.255 0.745
38 H 0.403 0.597
39 H 0.041 0.959
40 H 0.055 0.945
41 H 0.048 0.952
42 H 0.048 0.952
43 H 0.015 0.985
44 H 0.092 0.908
45 H 0.252 0.748
46 H 0.047 0.953
47 H 0.064 0.936
48 H 0.052 0.948
49 H 0.076 0.924
50 H 0.067 0.933
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.501 -0.743 19.173 19.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.090 4.090
3 C -0.046 4.046
4 N -0.221 5.221
5 C -0.029 4.029
6 O -0.077 6.077
7 C -0.163 4.163
8 C 0.389 3.611
9 O -0.391 6.391
10 N -0.348 5.348
11 C 0.036 3.964
12 H 0.133 0.867
13 C -0.191 4.191
14 H 0.111 0.889
15 C -0.126 4.126
16 C -0.174 4.174
17 C 0.041 3.959
18 N -0.291 5.291
19 C -0.371 4.371
20 H 0.094 0.906
21 C -0.198 4.198
22 N -0.551 5.551
23 Si 0.730 3.270
24 H -0.203 1.203
25 H -0.217 1.217
26 H -0.218 1.218
27 C 0.045 3.955
28 H 0.069 0.931
29 C -0.066 4.066
30 C -0.190 4.190
31 C -0.178 4.178
32 H 0.077 0.923
33 H 0.083 0.917
34 H 0.072 0.928
35 H 0.098 0.902
36 H 0.120 0.880
37 H 0.271 0.729
38 H 0.239 0.761
39 H 0.060 0.940
40 H 0.074 0.926
41 H 0.067 0.933
42 H 0.067 0.933
43 H 0.034 0.966
44 H 0.110 0.890
45 H 0.062 0.938
46 H 0.066 0.934
47 H 0.083 0.917
48 H 0.071 0.929
49 H 0.095 0.905
50 H 0.086 0.914
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -5.725 -1.603 19.307 20.202
hybrid contribution 0.744 1.690 -0.793 2.009
sum -4.981 0.087 18.515 19.173
Atomic orbital electron populations
1.21629 0.93819 1.02284 1.01939 1.20166 0.96646 0.87741 1.04439
1.22058 0.97953 0.98266 0.86327 1.70330 1.16981 1.03264 1.31528
1.28307 0.97514 0.97617 0.79487 1.84503 1.64776 1.33975 1.24428
1.23161 1.11425 0.85024 0.96661 1.16360 0.78349 0.85167 0.81212
1.90856 1.47216 1.19358 1.81694 1.46042 1.65668 1.16609 1.06454
1.22587 0.99242 0.97939 0.76616 0.86691 1.23409 0.96505 0.98886
1.00300 0.88883 1.21306 0.98266 0.95653 0.97422 1.22289 0.97612
0.99378 0.98161 1.20864 0.96530 0.86613 0.91859 1.43846 1.29861
1.05352 1.50043 1.19336 1.36770 0.83875 0.97152 0.90596 1.25124
1.02238 0.96884 0.95568 1.69962 1.48005 1.28727 1.08445 0.86260
0.78335 0.83993 0.78418 1.20313 1.21740 1.21791 1.21375 0.91186
0.94472 0.88509 0.93069 1.21848 0.95782 0.94094 0.94887 1.21713
0.94933 1.01086 1.01311 1.21665 1.00285 0.97004 0.98850 0.92318
0.91674 0.92847 0.90188 0.88020 0.72920 0.76099 0.93996 0.92630
0.93315 0.93316 0.96638 0.89003 0.93759 0.93423 0.91658 0.92859
0.90510 0.91422 0.94458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 9.89 37.16 0.37 -1.02 16
2 C -0.05 -0.58 5.93 -27.88 -0.17 -0.74 16
3 C 0.08 0.95 6.41 -82.46 -0.53 0.43 16
4 N -0.49 -5.52 11.26 -10.88 -0.12 -5.64 16
5 C 0.20 1.62 13.21 52.24 0.69 2.31 16
6 O -0.19 -2.01 10.57 4.43 0.05 -1.97 16
7 C -0.11 -1.36 7.18 -36.84 -0.26 -1.62 16
8 C 0.60 8.58 7.79 -12.83 -0.10 8.48 16
9 O -0.51 -8.34 14.46 5.20 0.08 -8.27 16
10 N -0.70 -9.37 5.33 -58.96 -0.31 -9.68 16
11 C 0.14 2.12 3.46 -71.84 -0.25 1.88 16
12 H 0.12 1.84 7.56 -51.92 -0.39 1.44 16
13 C -0.17 -2.91 2.82 -95.82 -0.27 -3.18 16
14 H 0.09 1.70 6.07 -51.93 -0.32 1.39 16
15 C -0.09 -1.55 6.19 -26.50 -0.16 -1.71 16
16 C -0.14 -2.57 5.93 -25.86 -0.15 -2.72 16
17 C 0.17 3.84 5.31 -3.25 -0.02 3.82 16
18 N -0.57 -13.27 2.87 -169.41 -0.49 -13.76 16
19 C -0.24 -6.14 9.08 -15.06 -0.14 -6.28 16
20 H 0.08 1.85 5.13 -52.49 -0.27 1.58 16
21 C 0.00 0.00 5.15 -17.43 -0.09 -0.09 16
22 N -0.91 -25.54 10.98 55.49 0.61 -24.93 16
23 Si 0.90 21.03 29.57 -169.99 -5.03 16.00 16
24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
27 C 0.15 2.98 3.01 -72.13 -0.22 2.76 16
28 H 0.05 1.05 8.01 -51.93 -0.42 0.64 16
29 C -0.06 -1.03 1.36 -159.15 -0.22 -1.25 16
30 C -0.13 -1.96 9.21 37.16 0.34 -1.61 16
31 C -0.12 -1.87 6.94 37.15 0.26 -1.61 16
32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.10 1.24 6.45 -51.93 -0.33 0.90 16
37 H 0.26 0.67 8.06 -52.49 -0.42 0.25 16
38 H 0.40 4.82 6.51 -40.82 -0.27 4.56 16
39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16
41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
44 H 0.09 2.39 6.09 -51.93 -0.32 2.08 16
45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16
46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16
49 H 0.08 1.34 5.75 -51.93 -0.30 1.04 16
50 H 0.07 1.11 6.98 -51.93 -0.36 0.75 16
51 H 0.04 0.46 6.50 -51.93 -0.34 0.12 16
LS Contribution 394.25 15.07 5.94 5.94
Total: -1.00 -30.26 394.25 -8.12 -38.38
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: -7.93 Total: 6.08 kcal
Atomic # 6 Polarization: -1.25 SS G_CDS: -0.91 Total: -2.17 kcal
Atomic # 7 Polarization: -53.70 SS G_CDS: -0.31 Total: -54.01 kcal
Atomic # 8 Polarization: -10.35 SS G_CDS: 0.12 Total: -10.23 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -30.26 -8.12 -38.38 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087302994.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.803 kcal
(2) G-P(sol) polarization free energy of solvation -30.259 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds