Wall clock time and date at job start Wed Apr 1 2020 06:03:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50701 * 109.47084 * 2 1
4 4 N 1.33698 * 126.27766 * 90.02128 * 3 2 1
5 5 C 1.30614 * 108.99644 * 179.97438 * 4 3 2
6 6 O 1.33666 * 109.15459 * 359.97438 * 5 4 3
7 7 C 1.35341 * 107.68391 * 359.76200 * 6 5 4
8 8 C 1.46727 * 126.64132 * 180.26356 * 7 6 5
9 9 O 1.21689 * 119.99601 * 180.13801 * 8 7 6
10 10 N 1.34771 * 120.00310 * 0.14247 * 8 7 6
11 11 C 1.46497 * 120.00490 * 180.02562 * 10 8 7
12 12 H 1.09009 * 113.22141 * 28.29590 * 11 10 8
13 13 C 1.50006 * 114.12511 * 255.49637 * 11 10 8
14 14 H 1.09002 * 112.50666 * 322.39696 * 13 11 10
15 15 C 1.51207 * 126.16487 * 104.79942 * 13 11 10
16 16 C 1.55140 * 105.66976 * 161.77215 * 15 13 11
17 17 C 1.52495 * 112.60054 * 304.24698 * 16 15 13
18 18 N 1.48408 * 111.86605 * 46.99146 * 17 16 15
19 19 C 1.36938 * 123.16965 * 128.16009 * 18 17 16
20 20 H 1.08002 * 119.99862 * 207.36604 * 19 18 17
21 21 C 1.38807 * 119.99868 * 27.35946 * 19 18 17
22 22 N 1.31625 * 120.00082 * 11.20443 * 21 19 18
23 23 Si 1.86798 * 120.00128 * 191.19647 * 21 19 18
24 24 H 1.48498 * 109.47322 * 0.02562 * 23 21 19
25 25 H 1.48506 * 109.46905 * 120.00479 * 23 21 19
26 26 H 1.48501 * 109.47560 * 240.00354 * 23 21 19
27 27 C 1.45383 * 113.66433 * 308.16615 * 18 17 16
28 28 H 1.09004 * 112.08435 * 300.24998 * 27 18 17
29 29 C 1.49962 * 126.22636 * 155.82208 * 27 18 17
30 30 C 1.53005 * 114.07824 * 106.76083 * 29 27 18
31 31 C 1.52995 * 114.08744 * 334.33993 * 29 27 18
32 32 H 1.09001 * 109.47009 * 60.00596 * 1 2 3
33 33 H 1.09000 * 109.47060 * 179.97438 * 1 2 3
34 34 H 1.08994 * 109.47341 * 300.00294 * 1 2 3
35 35 H 1.09001 * 109.47009 * 119.99404 * 2 1 3
36 36 H 1.08995 * 109.47805 * 239.99953 * 2 1 3
37 37 H 1.07998 * 125.42100 * 180.02562 * 5 4 3
38 38 H 0.97003 * 119.99775 * 359.97438 * 10 8 7
39 39 H 1.08998 * 110.10121 * 280.57730 * 15 13 11
40 40 H 1.09003 * 110.09735 * 42.23245 * 15 13 11
41 41 H 1.09003 * 108.71957 * 183.55810 * 16 15 13
42 42 H 1.08999 * 108.96221 * 65.10572 * 16 15 13
43 43 H 1.09002 * 109.00174 * 286.37789 * 17 16 15
44 44 H 1.08996 * 109.00742 * 167.60731 * 17 16 15
45 45 H 0.96997 * 120.00367 * 179.97438 * 22 21 19
46 46 H 1.09001 * 109.46825 * 173.92708 * 30 29 27
47 47 H 1.09006 * 109.47229 * 293.92245 * 30 29 27
48 48 H 1.08997 * 109.47489 * 53.91925 * 30 29 27
49 49 H 1.09003 * 109.46914 * 332.80657 * 31 29 27
50 50 H 1.09007 * 109.47140 * 92.80220 * 31 29 27
51 51 H 1.08996 * 109.46911 * 212.80634 * 31 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2964 2.1665 1.0778
5 6 2.7125 3.3423 0.6898
6 8 2.7274 3.3833 -0.6461
7 6 2.3073 2.1792 -1.0992
8 6 2.1709 1.7702 -2.5017
9 8 1.7770 0.6514 -2.7736
10 7 2.4819 2.6336 -3.4887
11 6 2.3452 2.2255 -4.8890
12 1 1.5749 1.4698 -5.0433
13 6 3.6473 1.9213 -5.5689
14 1 4.4467 2.5948 -5.2599
15 6 4.1813 0.5458 -5.8994
16 6 5.2756 0.7688 -6.9764
17 6 4.7539 1.5236 -8.1944
18 7 3.9628 2.7181 -7.8074
19 6 4.2035 3.9702 -8.3069
20 1 3.9473 4.8426 -7.7240
21 6 4.7770 4.1182 -9.5623
22 7 4.8871 3.0787 -10.3622
23 14 5.3924 5.7925 -10.1166
24 1 5.1545 6.7883 -9.0410
25 1 6.8470 5.7145 -10.4054
26 1 4.6656 6.2057 -11.3439
27 6 2.9082 2.4338 -6.8479
28 1 2.1907 1.7080 -7.2307
29 6 2.2888 3.4129 -5.8958
30 6 0.8703 3.8418 -6.2764
31 6 3.1982 4.5870 -5.5280
32 1 -0.3633 0.5137 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 1.8933 -0.5137 0.8900
36 1 1.8934 -0.5138 -0.8899
37 1 2.9996 4.1520 1.3442
38 1 2.7956 3.5255 -3.2719
39 1 4.6187 0.0903 -5.0110
40 1 3.3808 -0.0832 -6.2888
41 1 5.6523 -0.2019 -7.2986
42 1 6.0958 1.3356 -6.5358
43 1 4.1240 0.8561 -8.7826
44 1 5.5995 1.8405 -8.8047
45 1 5.2874 3.1821 -11.2396
46 1 0.4540 4.4641 -5.4842
47 1 0.8996 4.4093 -7.2066
48 1 0.2468 2.9578 -6.4097
49 1 4.2406 4.2804 -5.6156
50 1 3.0067 5.4205 -6.2039
51 1 2.9953 4.8965 -4.5028
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087302994.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:03:47
Heat of formation + Delta-G solvation = 27.259600 kcal
Electronic energy + Delta-G solvation = -32350.432061 eV
Core-core repulsion = 28252.767346 eV
Total energy + Delta-G solvation = -4097.664715 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-44.46703 -42.43988 -40.12256 -37.09038 -36.64429 -34.74212 -34.55870 -33.92835
-32.09226 -30.95311 -30.58783 -28.63733 -27.50285 -26.65833 -25.30824 -24.56716
-23.78357 -22.73508 -21.83494 -21.49582 -20.91852 -20.05931 -19.09629 -18.41225
-17.90343 -17.44670 -17.25624 -16.53842 -16.04629 -15.92385 -15.69450 -15.50860
-15.50168 -14.99093 -14.93345 -14.70206 -14.39044 -14.32387 -14.19806 -14.03648
-13.70343 -13.42440 -13.12456 -12.93808 -12.75927 -12.74469 -12.55372 -12.50273
-12.37012 -12.16990 -12.07488 -12.03583 -11.93115 -11.89613 -11.68308 -11.64312
-11.57489 -11.19480 -11.01305 -10.59504 -10.29285 -10.19249 -9.83919 -8.50333
-7.76886 -5.23934 -0.22129 1.41749 1.43614 1.46917 1.49306 1.57886
1.98184 2.15118 2.55345 3.12305 3.24270 3.39074 3.42888 3.63184
3.68274 3.71166 3.84995 4.10528 4.25387 4.28860 4.33317 4.35028
4.41517 4.46710 4.49473 4.58857 4.64518 4.65669 4.75060 4.80345
4.80995 4.96822 5.00498 5.02761 5.08382 5.10012 5.12365 5.15713
5.22387 5.22999 5.27083 5.33497 5.35281 5.42702 5.53533 5.57945
5.71868 5.77652 5.82153 6.31566 6.44689 6.58300 6.98637 7.18143
7.90052 8.54640 9.29278
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017923 B = 0.002914 C = 0.002753
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1561.855819 B = 9605.011459 C =10169.511410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.054 4.054
3 C 0.077 3.923
4 N -0.522 5.522
5 C 0.226 3.774
6 O -0.193 6.193
7 C -0.133 4.133
8 C 0.606 3.394
9 O -0.540 6.540
10 N -0.691 5.691
11 C 0.160 3.840
12 H 0.110 0.890
13 C -0.155 4.155
14 H 0.088 0.912
15 C -0.084 4.084
16 C -0.124 4.124
17 C 0.173 3.827
18 N -0.584 5.584
19 C -0.234 4.234
20 H 0.089 0.911
21 C -0.060 4.060
22 N -0.944 5.944
23 Si 0.958 3.042
24 H -0.260 1.260
25 H -0.298 1.298
26 H -0.299 1.299
27 C 0.133 3.867
28 H 0.038 0.962
29 C -0.058 4.058
30 C -0.130 4.130
31 C -0.117 4.117
32 H 0.042 0.958
33 H 0.078 0.922
34 H 0.057 0.943
35 H 0.091 0.909
36 H 0.086 0.914
37 H 0.308 0.692
38 H 0.412 0.588
39 H 0.057 0.943
40 H 0.054 0.946
41 H 0.064 0.936
42 H 0.047 0.953
43 H -0.011 1.011
44 H 0.058 0.942
45 H 0.244 0.756
46 H 0.073 0.927
47 H 0.048 0.952
48 H 0.056 0.944
49 H 0.056 0.944
50 H 0.058 0.942
51 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.966 0.762 22.703 23.486
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.092 4.092
3 C -0.046 4.046
4 N -0.250 5.250
5 C 0.002 3.998
6 O -0.079 6.079
7 C -0.188 4.188
8 C 0.393 3.607
9 O -0.420 6.420
10 N -0.341 5.341
11 C 0.055 3.945
12 H 0.128 0.872
13 C -0.176 4.176
14 H 0.106 0.894
15 C -0.122 4.122
16 C -0.163 4.163
17 C 0.048 3.952
18 N -0.305 5.305
19 C -0.364 4.364
20 H 0.106 0.894
21 C -0.254 4.254
22 N -0.592 5.592
23 Si 0.788 3.212
24 H -0.184 1.184
25 H -0.225 1.225
26 H -0.226 1.226
27 C 0.025 3.975
28 H 0.056 0.944
29 C -0.059 4.059
30 C -0.187 4.187
31 C -0.174 4.174
32 H 0.061 0.939
33 H 0.097 0.903
34 H 0.077 0.923
35 H 0.109 0.891
36 H 0.105 0.895
37 H 0.323 0.677
38 H 0.250 0.750
39 H 0.076 0.924
40 H 0.073 0.927
41 H 0.083 0.917
42 H 0.066 0.934
43 H 0.007 0.993
44 H 0.076 0.924
45 H 0.054 0.946
46 H 0.092 0.908
47 H 0.067 0.933
48 H 0.075 0.925
49 H 0.075 0.925
50 H 0.077 0.923
51 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.204 -0.082 22.889 23.715
hybrid contribution 0.868 1.215 -1.747 2.298
sum -5.336 1.133 21.142 21.835
Atomic orbital electron populations
1.21576 0.93069 1.03064 1.01314 1.20188 0.97268 0.87542 1.04211
1.22274 0.97037 0.98622 0.86712 1.70376 1.18814 1.04508 1.31318
1.29587 0.93596 0.97677 0.78961 1.84505 1.64927 1.32978 1.25480
1.22720 1.14070 0.86243 0.95811 1.16492 0.77595 0.84723 0.81916
1.90842 1.48305 1.20435 1.82374 1.45824 1.65786 1.17031 1.05422
1.22158 0.97557 0.97151 0.77608 0.87189 1.23310 0.97037 0.98261
0.98986 0.89436 1.21257 0.97722 0.95987 0.97247 1.22111 0.97910
0.99442 0.96856 1.20663 0.94867 0.86570 0.93091 1.44028 1.31354
1.04763 1.50394 1.19760 1.34706 0.85148 0.96770 0.89391 1.25836
1.03708 0.99749 0.96126 1.70140 1.49899 1.30570 1.08553 0.85316
0.76993 0.80971 0.77937 1.18409 1.22517 1.22645 1.21607 0.91048
0.96446 0.88440 0.94445 1.21838 0.96434 0.94096 0.93524 1.21680
0.94160 1.01473 1.01388 1.21594 0.98753 0.96173 1.00862 0.93888
0.90274 0.92347 0.89059 0.89510 0.67704 0.75003 0.92420 0.92736
0.91745 0.93375 0.99295 0.92370 0.94644 0.90837 0.93276 0.92535
0.92542 0.92325 0.90859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.47 9.89 71.98 0.71 -1.76 16
2 C -0.05 -1.14 5.93 29.85 0.18 -0.96 16
3 C 0.08 1.75 6.41 41.83 0.27 2.02 16
4 N -0.52 -10.15 11.26 -303.12 -3.41 -13.57 16
5 C 0.23 2.80 13.21 130.42 1.72 4.53 16
6 O -0.19 -3.40 10.57 -7.07 -0.07 -3.47 16
7 C -0.13 -3.10 7.18 24.05 0.17 -2.92 16
8 C 0.61 16.24 7.79 86.46 0.67 16.92 16
9 O -0.54 -17.10 14.46 -4.31 -0.06 -17.17 16
10 N -0.69 -17.02 5.33 -458.68 -2.44 -19.46 16
11 C 0.16 4.63 3.46 42.46 0.15 4.77 16
12 H 0.11 3.39 7.56 -2.38 -0.02 3.37 16
13 C -0.15 -5.18 2.82 -14.16 -0.04 -5.22 16
14 H 0.09 3.09 6.07 -2.39 -0.01 3.08 16
15 C -0.08 -2.89 6.19 30.74 0.19 -2.70 16
16 C -0.12 -4.74 5.93 31.16 0.18 -4.56 16
17 C 0.17 8.34 5.31 85.84 0.46 8.79 16
18 N -0.58 -27.84 2.87 -689.90 -1.98 -29.82 16
19 C -0.23 -12.02 9.08 84.03 0.76 -11.26 16
20 H 0.09 4.24 5.13 -2.91 -0.01 4.22 16
21 C -0.06 -3.28 5.15 84.86 0.44 -2.84 16
22 N -0.94 -55.53 10.98 21.65 0.24 -55.30 16
23 Si 0.96 44.02 29.57 68.60 2.03 46.05 16
24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16
25 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16
26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16
27 C 0.13 5.17 3.01 42.87 0.13 5.30 16
28 H 0.04 1.58 8.01 -2.38 -0.02 1.56 16
29 C -0.06 -1.76 1.36 -55.19 -0.08 -1.84 16
30 C -0.13 -3.60 9.21 71.98 0.66 -2.94 16
31 C -0.12 -3.37 6.94 71.98 0.50 -2.87 16
32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
36 H 0.09 2.08 6.45 -2.39 -0.02 2.07 16
37 H 0.31 -0.18 8.06 -2.91 -0.02 -0.20 16
38 H 0.41 8.60 6.51 -92.71 -0.60 8.00 16
39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16
41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16
44 H 0.06 3.19 6.09 -2.39 -0.01 3.18 16
45 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16
46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16
48 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16
49 H 0.06 1.88 5.75 -2.39 -0.01 1.87 16
50 H 0.06 1.80 6.98 -2.38 -0.02 1.79 16
51 H 0.07 1.57 6.50 -2.39 -0.02 1.55 16
Total: -1.00 -68.53 394.25 1.72 -66.81
By element:
Atomic # 1 Polarization: 23.12 SS G_CDS: 0.35 Total: 23.47 kcal
Atomic # 6 Polarization: -4.63 SS G_CDS: 7.08 Total: 2.45 kcal
Atomic # 7 Polarization: -110.54 SS G_CDS: -7.60 Total: -118.14 kcal
Atomic # 8 Polarization: -20.50 SS G_CDS: -0.14 Total: -20.64 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal
Total: -68.53 1.72 -66.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087302994.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.069 kcal
(2) G-P(sol) polarization free energy of solvation -68.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.538 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds