Wall clock time and date at job start Wed Apr 1 2020 05:40:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50702 * 109.47281 * 2 1
4 4 O 1.33499 * 126.82524 * 270.00291 * 3 2 1
5 5 N 1.20662 * 113.15138 * 179.97438 * 4 3 2
6 6 C 1.30014 * 112.30502 * 359.73178 * 5 4 3
7 7 C 1.37356 * 126.83292 * 90.00385 * 3 2 1
8 8 C 1.47402 * 128.56033 * 359.96084 * 7 3 2
9 9 O 1.21608 * 120.00066 * 0.02562 * 8 7 3
10 10 N 1.34775 * 119.99514 * 180.02562 * 8 7 3
11 11 C 1.46503 * 119.99775 * 180.02562 * 10 8 7
12 12 H 1.09000 * 113.22304 * 22.19772 * 11 10 8
13 13 C 1.49998 * 114.12702 * 249.14165 * 11 10 8
14 14 H 1.09004 * 112.50499 * 322.39585 * 13 11 10
15 15 C 1.51207 * 126.17298 * 104.78687 * 13 11 10
16 16 C 1.54092 * 106.19423 * 161.43282 * 15 13 11
17 17 C 1.52500 * 112.66663 * 304.55962 * 16 15 13
18 18 N 1.48405 * 111.87276 * 46.78955 * 17 16 15
19 19 C 1.36937 * 123.16653 * 128.13513 * 18 17 16
20 20 H 1.07993 * 120.00597 * 223.94435 * 19 18 17
21 21 C 1.38813 * 119.99795 * 43.94168 * 19 18 17
22 22 N 1.31619 * 120.00272 * 207.35184 * 21 19 18
23 23 Si 1.86807 * 120.00136 * 27.35490 * 21 19 18
24 24 H 1.48494 * 109.47134 * 84.35206 * 23 21 19
25 25 H 1.48499 * 109.47207 * 204.35672 * 23 21 19
26 26 H 1.48500 * 109.46806 * 324.35004 * 23 21 19
27 27 C 1.45379 * 113.66911 * 308.16015 * 18 17 16
28 28 H 1.09002 * 112.08842 * 301.17107 * 27 18 17
29 29 C 1.49961 * 126.67299 * 155.94913 * 27 18 17
30 30 C 1.52998 * 114.08466 * 334.31735 * 29 27 18
31 31 C 1.52998 * 114.08362 * 106.56428 * 29 27 18
32 32 H 1.09005 * 109.46697 * 299.99970 * 1 2 3
33 33 H 1.08996 * 109.47304 * 60.00014 * 1 2 3
34 34 H 1.08999 * 109.47325 * 180.02562 * 1 2 3
35 35 H 1.08999 * 109.47091 * 240.00049 * 2 1 3
36 36 H 1.08998 * 109.47745 * 120.00265 * 2 1 3
37 37 H 1.07989 * 127.33706 * 180.27181 * 6 5 4
38 38 H 0.96997 * 120.00191 * 359.97438 * 10 8 7
39 39 H 1.08998 * 110.10177 * 42.25933 * 15 13 11
40 40 H 1.09004 * 110.10156 * 280.59871 * 15 13 11
41 41 H 1.09004 * 108.84302 * 183.74222 * 16 15 13
42 42 H 1.09000 * 108.84651 * 65.38169 * 16 15 13
43 43 H 1.09001 * 108.99997 * 167.40689 * 17 16 15
44 44 H 1.09001 * 109.00301 * 286.17365 * 17 16 15
45 45 H 0.97002 * 120.00485 * 179.97438 * 22 21 19
46 46 H 1.09006 * 109.47291 * 67.73130 * 30 29 27
47 47 H 1.08999 * 109.47477 * 187.73052 * 30 29 27
48 48 H 1.08998 * 109.47443 * 307.72866 * 30 29 27
49 49 H 1.08997 * 109.47476 * 60.00201 * 31 29 27
50 50 H 1.09000 * 109.47404 * 180.02562 * 31 29 27
51 51 H 1.08998 * 109.47190 * 300.00050 * 31 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 2.2990 2.1752 -1.0686
5 7 2.6894 3.2807 -0.7834
6 6 2.7488 3.4667 0.5020
7 6 2.3069 2.1971 1.0994
8 6 2.1823 1.8469 2.5258
9 8 1.7912 0.7416 2.8486
10 7 2.5019 2.7517 3.4721
11 6 2.3787 2.4035 4.8898
12 1 2.4003 1.3290 5.0719
13 6 1.2781 3.1287 5.6059
14 1 1.1747 4.1620 5.2745
15 6 -0.0548 2.5453 6.0175
16 6 -0.6203 3.4863 7.0988
17 6 0.3391 3.6815 8.2681
18 7 1.7212 3.9649 7.8078
19 6 2.4533 5.0346 8.2493
20 1 3.0204 5.6277 7.5472
21 6 2.4665 5.3568 9.5995
22 7 2.6779 6.5997 9.9776
23 14 2.1842 4.0263 10.8801
24 1 3.4663 3.3333 11.1647
25 1 1.6667 4.6423 12.1282
26 1 1.1950 3.0457 10.3651
27 6 2.2246 3.0003 6.8437
28 1 2.2280 1.9858 7.2424
29 6 3.3070 3.2276 5.8310
30 6 3.4767 4.6904 5.4161
31 6 4.6313 2.5391 6.1673
32 1 -0.3633 0.5139 0.8901
33 1 -0.3634 0.5138 -0.8899
34 1 -0.3634 -1.0276 0.0005
35 1 1.8933 -0.5138 -0.8900
36 1 1.8934 -0.5138 0.8899
37 1 3.0590 4.3616 1.0207
38 1 2.8142 3.6332 3.2146
39 1 0.0845 1.5449 6.4271
40 1 -0.7289 2.5105 5.1616
41 1 -1.5540 3.0688 7.4755
42 1 -0.8275 4.4567 6.6477
43 1 -0.0097 4.5149 8.8780
44 1 0.3461 2.7770 8.8763
45 1 2.6868 6.8249 10.9210
46 1 3.8583 5.2655 6.2598
47 1 4.1801 4.7534 4.5858
48 1 2.5128 5.0947 5.1071
49 1 4.4747 1.4625 6.2333
50 1 5.3608 2.7533 5.3863
51 1 5.0021 2.9115 7.1223
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087307160.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:40:07
Heat of formation + Delta-G solvation = 87.878926 kcal
Electronic energy + Delta-G solvation = -32332.514664 eV
Core-core repulsion = 28237.478600 eV
Total energy + Delta-G solvation = -4095.036064 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-45.14473 -41.13241 -39.01254 -35.59452 -34.88798 -34.06487 -33.22046 -32.94100
-30.91508 -30.49022 -29.51313 -27.30334 -26.21852 -25.52228 -24.26516 -24.14158
-22.40339 -21.84088 -20.61284 -20.27830 -19.63816 -18.60629 -17.98294 -17.80109
-16.82929 -16.55771 -15.84972 -15.16454 -15.08760 -14.78208 -14.63841 -14.25558
-14.01095 -13.94447 -13.80338 -13.45533 -13.40185 -13.03433 -12.87842 -12.76920
-12.55524 -12.15648 -12.09355 -11.81627 -11.74796 -11.66386 -11.47359 -11.23174
-11.19751 -11.07921 -10.71681 -10.65291 -10.52116 -10.48762 -10.36336 -10.05316
-9.95901 -9.69377 -9.63809 -9.57795 -8.99369 -8.70732 -8.33836 -6.55985
-6.06671 -3.49959 0.86282 1.56482 2.55080 3.13435 3.19448 3.37688
3.48234 3.52539 4.00184 4.05815 4.38050 4.53167 4.58350 4.69907
4.78609 4.88505 4.94654 4.99019 5.07634 5.11259 5.23844 5.38325
5.49014 5.54125 5.55766 5.56644 5.69016 5.75713 5.78485 5.86296
5.91921 5.95447 5.98155 6.06800 6.11679 6.23483 6.34701 6.35698
6.42445 6.45599 6.53096 6.58010 6.63377 6.78486 6.84051 6.88469
6.92283 7.11052 7.53103 7.91624 7.99986 8.16453 8.44382 8.92632
9.67397 10.26263 11.07995
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019089 B = 0.002936 C = 0.002775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1466.445442 B = 9534.944366 C =10086.368824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.049 4.049
3 C 0.049 3.951
4 O 0.090 5.910
5 N -0.356 5.356
6 C 0.023 3.977
7 C -0.260 4.260
8 C 0.596 3.404
9 O -0.537 6.537
10 N -0.701 5.701
11 C 0.141 3.859
12 H 0.116 0.884
13 C -0.170 4.170
14 H 0.097 0.903
15 C -0.088 4.088
16 C -0.131 4.131
17 C 0.140 3.860
18 N -0.579 5.579
19 C -0.270 4.270
20 H 0.086 0.914
21 C 0.047 3.953
22 N -0.892 5.892
23 Si 0.850 3.150
24 H -0.288 1.288
25 H -0.299 1.299
26 H -0.254 1.254
27 C 0.148 3.852
28 H 0.052 0.948
29 C -0.060 4.060
30 C -0.131 4.131
31 C -0.134 4.134
32 H 0.064 0.936
33 H 0.057 0.943
34 H 0.072 0.928
35 H 0.088 0.912
36 H 0.115 0.885
37 H 0.200 0.800
38 H 0.400 0.600
39 H 0.055 0.945
40 H 0.045 0.955
41 H 0.051 0.949
42 H 0.055 0.945
43 H 0.063 0.937
44 H 0.026 0.974
45 H 0.263 0.737
46 H 0.091 0.909
47 H 0.039 0.961
48 H 0.061 0.939
49 H 0.050 0.950
50 H 0.048 0.952
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.736 -10.473 -18.032 20.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.087 4.087
3 C -0.015 4.015
4 O 0.031 5.969
5 N -0.061 5.061
6 C -0.160 4.160
7 C -0.267 4.267
8 C 0.382 3.618
9 O -0.415 6.415
10 N -0.349 5.349
11 C 0.037 3.963
12 H 0.134 0.866
13 C -0.191 4.191
14 H 0.115 0.885
15 C -0.126 4.126
16 C -0.170 4.170
17 C 0.015 3.985
18 N -0.302 5.302
19 C -0.398 4.398
20 H 0.104 0.896
21 C -0.155 4.155
22 N -0.531 5.531
23 Si 0.678 3.322
24 H -0.215 1.215
25 H -0.226 1.226
26 H -0.179 1.179
27 C 0.040 3.960
28 H 0.069 0.931
29 C -0.062 4.062
30 C -0.188 4.188
31 C -0.191 4.191
32 H 0.084 0.916
33 H 0.076 0.924
34 H 0.091 0.909
35 H 0.107 0.893
36 H 0.133 0.867
37 H 0.217 0.783
38 H 0.234 0.766
39 H 0.073 0.927
40 H 0.064 0.936
41 H 0.070 0.930
42 H 0.074 0.926
43 H 0.081 0.919
44 H 0.044 0.956
45 H 0.073 0.927
46 H 0.109 0.891
47 H 0.058 0.942
48 H 0.079 0.921
49 H 0.069 0.931
50 H 0.067 0.933
51 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -1.713 -10.316 -18.677 21.406
hybrid contribution -0.014 -0.227 1.642 1.658
sum -1.727 -10.543 -17.035 20.108
Atomic orbital electron populations
1.21709 0.92833 1.03067 1.02681 1.20390 0.97259 0.85461 1.05544
1.24927 0.95287 0.96151 0.85155 1.84575 1.61318 1.17628 1.33429
1.73658 1.16401 0.98474 1.17564 1.26411 1.00756 0.99280 0.89584
1.22215 1.13711 0.95129 0.95690 1.16799 0.77437 0.84609 0.82927
1.90770 1.47039 1.21568 1.82158 1.45813 1.66465 1.16228 1.06441
1.22529 0.97223 0.99812 0.76722 0.86615 1.23427 0.95228 1.00515
0.99952 0.88498 1.21095 0.95969 0.98285 0.97234 1.21959 0.98291
0.99132 0.97661 1.21424 0.84313 0.99008 0.93754 1.44003 1.09010
1.26609 1.50593 1.18816 1.26980 1.03039 0.90925 0.89641 1.25746
0.96806 0.95517 0.97470 1.69951 1.50081 1.16708 1.16402 0.87340
0.78887 0.84380 0.81567 1.21507 1.22636 1.17932 1.21451 0.93024
0.93052 0.88459 0.93052 1.21810 0.93817 0.95880 0.94648 1.21834
1.01270 0.93978 1.01723 1.21700 0.96121 0.99477 1.01801 0.91649
0.92411 0.90949 0.89304 0.86690 0.78271 0.76563 0.92665 0.93585
0.93038 0.92578 0.91883 0.95598 0.92726 0.89091 0.94233 0.92050
0.93066 0.93284 0.91535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 9.89 37.15 0.37 -0.74 16
2 C -0.05 -0.39 6.05 -27.88 -0.17 -0.56 16
3 C 0.05 0.50 6.80 -34.63 -0.24 0.27 16
4 O 0.09 0.97 11.06 18.64 0.21 1.18 16
5 N -0.36 -4.06 12.01 31.81 0.38 -3.68 16
6 C 0.02 0.23 11.95 -14.73 -0.18 0.05 16
7 C -0.26 -2.92 6.47 -102.89 -0.67 -3.59 16
8 C 0.60 7.76 7.81 -12.53 -0.10 7.66 16
9 O -0.54 -8.25 14.83 5.27 0.08 -8.17 16
10 N -0.70 -8.60 5.32 -58.75 -0.31 -8.91 16
11 C 0.14 2.02 3.52 -71.84 -0.25 1.77 16
12 H 0.12 1.77 7.39 -51.93 -0.38 1.39 16
13 C -0.17 -2.71 2.86 -95.83 -0.27 -2.99 16
14 H 0.10 1.66 5.88 -51.93 -0.31 1.35 16
15 C -0.09 -1.39 6.12 -27.06 -0.17 -1.56 16
16 C -0.13 -2.23 5.90 -26.42 -0.16 -2.38 16
17 C 0.14 2.86 4.48 -3.25 -0.01 2.85 16
18 N -0.58 -12.61 2.32 -169.42 -0.39 -13.01 16
19 C -0.27 -6.86 9.37 -15.06 -0.14 -7.01 16
20 H 0.09 2.27 5.04 -52.49 -0.26 2.01 16
21 C 0.05 1.27 5.13 -17.43 -0.09 1.19 16
22 N -0.89 -25.92 13.97 55.49 0.78 -25.15 16
23 Si 0.85 20.85 27.32 -169.99 -4.64 16.20 16
24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
25 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16
26 H -0.25 -5.90 4.69 56.52 0.26 -5.63 16
27 C 0.15 2.71 3.05 -72.14 -0.22 2.49 16
28 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16
29 C -0.06 -0.93 1.36 -159.16 -0.22 -1.15 16
30 C -0.13 -2.01 7.12 37.16 0.26 -1.75 16
31 C -0.13 -1.95 9.29 37.16 0.35 -1.60 16
32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
36 H 0.11 1.06 6.78 -51.93 -0.35 0.71 16
37 H 0.20 1.40 7.88 -52.49 -0.41 0.98 16
38 H 0.40 4.16 6.82 -40.82 -0.28 3.88 16
39 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16
40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.06 1.40 7.23 -51.93 -0.38 1.02 16
44 H 0.03 0.54 6.39 -51.93 -0.33 0.21 16
45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
46 H 0.09 1.69 5.50 -51.93 -0.29 1.41 16
47 H 0.04 0.49 7.89 -51.93 -0.41 0.08 16
48 H 0.06 0.96 5.90 -51.93 -0.31 0.65 16
49 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16
50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 391.24 15.07 5.90 5.90
Total: -1.00 -30.05 391.24 -7.94 -37.99
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: -8.03 Total: 4.70 kcal
Atomic # 6 Polarization: -5.15 SS G_CDS: -1.90 Total: -7.05 kcal
Atomic # 7 Polarization: -51.19 SS G_CDS: 0.45 Total: -50.74 kcal
Atomic # 8 Polarization: -7.28 SS G_CDS: 0.28 Total: -7.00 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -4.64 Total: 16.20 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -30.05 -7.94 -37.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087307160.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.866 kcal
(2) G-P(sol) polarization free energy of solvation -30.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds