Wall clock time and date at job start Wed Apr 1 2020 05:40:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50702 * 109.47281 * 2 1
4 4 O 1.33499 * 126.82524 * 270.00291 * 3 2 1
5 5 N 1.20662 * 113.15138 * 179.97438 * 4 3 2
6 6 C 1.30014 * 112.30502 * 359.73178 * 5 4 3
7 7 C 1.37356 * 126.83292 * 90.00385 * 3 2 1
8 8 C 1.47402 * 128.56033 * 359.96084 * 7 3 2
9 9 O 1.21608 * 120.00066 * 0.02562 * 8 7 3
10 10 N 1.34775 * 119.99514 * 180.02562 * 8 7 3
11 11 C 1.46503 * 119.99775 * 180.02562 * 10 8 7
12 12 H 1.09000 * 113.22304 * 22.19772 * 11 10 8
13 13 C 1.49998 * 114.12702 * 249.14165 * 11 10 8
14 14 H 1.09004 * 112.50499 * 322.39585 * 13 11 10
15 15 C 1.51207 * 126.17298 * 104.78687 * 13 11 10
16 16 C 1.54092 * 106.19423 * 161.43282 * 15 13 11
17 17 C 1.52500 * 112.66663 * 304.55962 * 16 15 13
18 18 N 1.48405 * 111.87276 * 46.78955 * 17 16 15
19 19 C 1.36937 * 123.16653 * 128.13513 * 18 17 16
20 20 H 1.07993 * 120.00597 * 223.94435 * 19 18 17
21 21 C 1.38813 * 119.99795 * 43.94168 * 19 18 17
22 22 N 1.31619 * 120.00272 * 207.35184 * 21 19 18
23 23 Si 1.86807 * 120.00136 * 27.35490 * 21 19 18
24 24 H 1.48494 * 109.47134 * 84.35206 * 23 21 19
25 25 H 1.48499 * 109.47207 * 204.35672 * 23 21 19
26 26 H 1.48500 * 109.46806 * 324.35004 * 23 21 19
27 27 C 1.45379 * 113.66911 * 308.16015 * 18 17 16
28 28 H 1.09002 * 112.08842 * 301.17107 * 27 18 17
29 29 C 1.49961 * 126.67299 * 155.94913 * 27 18 17
30 30 C 1.52998 * 114.08466 * 334.31735 * 29 27 18
31 31 C 1.52998 * 114.08362 * 106.56428 * 29 27 18
32 32 H 1.09005 * 109.46697 * 299.99970 * 1 2 3
33 33 H 1.08996 * 109.47304 * 60.00014 * 1 2 3
34 34 H 1.08999 * 109.47325 * 180.02562 * 1 2 3
35 35 H 1.08999 * 109.47091 * 240.00049 * 2 1 3
36 36 H 1.08998 * 109.47745 * 120.00265 * 2 1 3
37 37 H 1.07989 * 127.33706 * 180.27181 * 6 5 4
38 38 H 0.96997 * 120.00191 * 359.97438 * 10 8 7
39 39 H 1.08998 * 110.10177 * 42.25933 * 15 13 11
40 40 H 1.09004 * 110.10156 * 280.59871 * 15 13 11
41 41 H 1.09004 * 108.84302 * 183.74222 * 16 15 13
42 42 H 1.09000 * 108.84651 * 65.38169 * 16 15 13
43 43 H 1.09001 * 108.99997 * 167.40689 * 17 16 15
44 44 H 1.09001 * 109.00301 * 286.17365 * 17 16 15
45 45 H 0.97002 * 120.00485 * 179.97438 * 22 21 19
46 46 H 1.09006 * 109.47291 * 67.73130 * 30 29 27
47 47 H 1.08999 * 109.47477 * 187.73052 * 30 29 27
48 48 H 1.08998 * 109.47443 * 307.72866 * 30 29 27
49 49 H 1.08997 * 109.47476 * 60.00201 * 31 29 27
50 50 H 1.09000 * 109.47404 * 180.02562 * 31 29 27
51 51 H 1.08998 * 109.47190 * 300.00050 * 31 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 2.2990 2.1752 -1.0686
5 7 2.6894 3.2807 -0.7834
6 6 2.7488 3.4667 0.5020
7 6 2.3069 2.1971 1.0994
8 6 2.1823 1.8469 2.5258
9 8 1.7912 0.7416 2.8486
10 7 2.5019 2.7517 3.4721
11 6 2.3787 2.4035 4.8898
12 1 2.4003 1.3290 5.0719
13 6 1.2781 3.1287 5.6059
14 1 1.1747 4.1620 5.2745
15 6 -0.0548 2.5453 6.0175
16 6 -0.6203 3.4863 7.0988
17 6 0.3391 3.6815 8.2681
18 7 1.7212 3.9649 7.8078
19 6 2.4533 5.0346 8.2493
20 1 3.0204 5.6277 7.5472
21 6 2.4665 5.3568 9.5995
22 7 2.6779 6.5997 9.9776
23 14 2.1842 4.0263 10.8801
24 1 3.4663 3.3333 11.1647
25 1 1.6667 4.6423 12.1282
26 1 1.1950 3.0457 10.3651
27 6 2.2246 3.0003 6.8437
28 1 2.2280 1.9858 7.2424
29 6 3.3070 3.2276 5.8310
30 6 3.4767 4.6904 5.4161
31 6 4.6313 2.5391 6.1673
32 1 -0.3633 0.5139 0.8901
33 1 -0.3634 0.5138 -0.8899
34 1 -0.3634 -1.0276 0.0005
35 1 1.8933 -0.5138 -0.8900
36 1 1.8934 -0.5138 0.8899
37 1 3.0590 4.3616 1.0207
38 1 2.8142 3.6332 3.2146
39 1 0.0845 1.5449 6.4271
40 1 -0.7289 2.5105 5.1616
41 1 -1.5540 3.0688 7.4755
42 1 -0.8275 4.4567 6.6477
43 1 -0.0097 4.5149 8.8780
44 1 0.3461 2.7770 8.8763
45 1 2.6868 6.8249 10.9210
46 1 3.8583 5.2655 6.2598
47 1 4.1801 4.7534 4.5858
48 1 2.5128 5.0947 5.1071
49 1 4.4747 1.4625 6.2333
50 1 5.3608 2.7533 5.3863
51 1 5.0021 2.9115 7.1223
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087307160.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:40:06
Heat of formation + Delta-G solvation = 70.649153 kcal
Electronic energy + Delta-G solvation = -32333.261803 eV
Core-core repulsion = 28237.478600 eV
Total energy + Delta-G solvation = -4095.783203 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-45.94398 -42.43872 -40.10827 -37.05317 -35.62410 -34.98513 -34.82915 -34.12074
-32.67913 -31.28201 -30.84185 -28.58952 -27.53903 -26.94725 -25.42536 -24.93686
-23.79267 -22.94049 -21.76424 -21.41469 -21.01692 -19.82896 -18.99313 -18.75070
-18.48153 -17.42405 -17.08897 -16.86319 -16.05639 -15.91361 -15.69399 -15.42836
-15.37399 -15.10192 -14.95692 -14.86417 -14.47691 -14.42772 -14.20110 -14.07513
-13.64408 -13.52964 -13.32222 -13.12978 -12.84930 -12.73946 -12.67581 -12.64600
-12.46801 -12.44844 -11.98623 -11.94068 -11.84460 -11.71694 -11.48336 -11.44654
-11.40775 -11.18864 -11.03483 -10.60991 -10.52161 -10.22354 -9.83416 -8.35592
-8.15639 -5.53482 0.03485 0.77512 1.38042 1.45929 1.52736 1.74076
2.16389 2.22154 2.51075 3.05022 3.21920 3.25335 3.30371 3.45786
3.58698 3.69230 3.84625 3.98453 4.06241 4.18699 4.20832 4.29159
4.34795 4.39732 4.45701 4.54690 4.62393 4.65835 4.73245 4.74976
4.85219 4.88289 4.96139 4.99968 5.01739 5.08683 5.10898 5.13093
5.17012 5.20998 5.23840 5.30831 5.32976 5.36443 5.47326 5.50851
5.57906 5.76721 6.00170 6.44877 6.54021 7.03700 7.12709 7.18218
7.68694 8.33076 9.02915
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019089 B = 0.002936 C = 0.002775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1466.445442 B = 9534.944366 C =10086.368824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.049 4.049
3 C 0.059 3.941
4 O 0.086 5.914
5 N -0.376 5.376
6 C 0.034 3.966
7 C -0.281 4.281
8 C 0.600 3.400
9 O -0.561 6.561
10 N -0.693 5.693
11 C 0.163 3.837
12 H 0.113 0.887
13 C -0.155 4.155
14 H 0.088 0.912
15 C -0.085 4.085
16 C -0.122 4.122
17 C 0.137 3.863
18 N -0.591 5.591
19 C -0.244 4.244
20 H 0.071 0.929
21 C -0.007 4.007
22 N -0.941 5.941
23 Si 0.898 3.102
24 H -0.297 1.297
25 H -0.310 1.310
26 H -0.234 1.234
27 C 0.126 3.874
28 H 0.052 0.948
29 C -0.059 4.059
30 C -0.124 4.124
31 C -0.131 4.131
32 H 0.042 0.958
33 H 0.065 0.935
34 H 0.088 0.912
35 H 0.116 0.884
36 H 0.104 0.896
37 H 0.228 0.772
38 H 0.410 0.590
39 H 0.059 0.941
40 H 0.061 0.939
41 H 0.075 0.925
42 H 0.050 0.950
43 H 0.039 0.961
44 H 0.025 0.975
45 H 0.259 0.741
46 H 0.054 0.946
47 H 0.073 0.927
48 H 0.057 0.943
49 H 0.060 0.940
50 H 0.069 0.931
51 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.246 -12.413 -20.561 24.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.087 4.087
3 C -0.006 4.006
4 O 0.029 5.971
5 N -0.084 5.084
6 C -0.149 4.149
7 C -0.288 4.288
8 C 0.388 3.612
9 O -0.442 6.442
10 N -0.343 5.343
11 C 0.058 3.942
12 H 0.131 0.869
13 C -0.176 4.176
14 H 0.106 0.894
15 C -0.122 4.122
16 C -0.161 4.161
17 C 0.013 3.987
18 N -0.315 5.315
19 C -0.373 4.373
20 H 0.088 0.912
21 C -0.205 4.205
22 N -0.584 5.584
23 Si 0.726 3.274
24 H -0.224 1.224
25 H -0.238 1.238
26 H -0.158 1.158
27 C 0.019 3.981
28 H 0.070 0.930
29 C -0.061 4.061
30 C -0.181 4.181
31 C -0.188 4.188
32 H 0.061 0.939
33 H 0.084 0.916
34 H 0.107 0.893
35 H 0.134 0.866
36 H 0.122 0.878
37 H 0.244 0.756
38 H 0.247 0.753
39 H 0.078 0.922
40 H 0.079 0.921
41 H 0.094 0.906
42 H 0.069 0.931
43 H 0.058 0.942
44 H 0.043 0.957
45 H 0.068 0.932
46 H 0.072 0.928
47 H 0.092 0.908
48 H 0.076 0.924
49 H 0.079 0.921
50 H 0.088 0.912
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -2.240 -12.296 -21.251 24.654
hybrid contribution 0.140 0.347 2.309 2.339
sum -2.100 -11.948 -18.942 22.494
Atomic orbital electron populations
1.21690 0.92381 1.03958 1.01902 1.20508 0.97496 0.84337 1.06343
1.25346 0.93713 0.96689 0.84841 1.84572 1.61452 1.17615 1.33490
1.73658 1.17540 0.98913 1.18271 1.26844 0.99319 0.99618 0.89134
1.22090 1.15570 0.96216 0.94921 1.16930 0.76668 0.84117 0.83524
1.90763 1.48156 1.22606 1.82651 1.45629 1.66436 1.16778 1.05418
1.22098 0.95322 0.99125 0.77645 0.86873 1.23325 0.95281 1.00449
0.98536 0.89397 1.21077 0.95902 0.98023 0.97239 1.21838 0.98227
0.99487 0.96589 1.21432 0.84352 0.97830 0.95134 1.44111 1.09675
1.26745 1.50920 1.18898 1.25031 1.02989 0.90384 0.91220 1.26243
0.98337 0.96647 0.99254 1.70047 1.53823 1.18331 1.16225 0.86561
0.78659 0.82708 0.79447 1.22431 1.23750 1.15836 1.21734 0.95967
0.91991 0.88444 0.93028 1.21832 0.93952 0.96303 0.93964 1.21709
1.01748 0.93214 1.01399 1.21670 0.95977 0.99873 1.01273 0.93884
0.91632 0.89293 0.86572 0.87771 0.75606 0.75269 0.92182 0.92062
0.90649 0.93141 0.94248 0.95688 0.93243 0.92762 0.90808 0.92435
0.92056 0.91213 0.93852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16
2 C -0.05 -0.67 6.05 29.85 0.18 -0.49 16
3 C 0.06 1.07 6.80 25.48 0.17 1.24 16
4 O 0.09 1.66 11.06 76.93 0.85 2.51 16
5 N -0.38 -7.76 12.01 -54.19 -0.65 -8.41 16
6 C 0.03 0.58 11.95 87.29 1.04 1.63 16
7 C -0.28 -5.64 6.47 -18.74 -0.12 -5.76 16
8 C 0.60 14.16 7.81 86.66 0.68 14.83 16
9 O -0.56 -16.09 14.83 -4.06 -0.06 -16.15 16
10 N -0.69 -15.06 5.32 -458.05 -2.44 -17.50 16
11 C 0.16 4.27 3.52 42.46 0.15 4.42 16
12 H 0.11 3.16 7.39 -2.39 -0.02 3.14 16
13 C -0.15 -4.63 2.86 -14.17 -0.04 -4.67 16
14 H 0.09 2.84 5.88 -2.39 -0.01 2.83 16
15 C -0.08 -2.45 6.12 30.38 0.19 -2.27 16
16 C -0.12 -3.91 5.90 30.80 0.18 -3.73 16
17 C 0.14 5.50 4.48 85.85 0.38 5.88 16
18 N -0.59 -25.61 2.32 -689.93 -1.60 -27.20 16
19 C -0.24 -12.65 9.37 84.03 0.79 -11.87 16
20 H 0.07 3.84 5.04 -2.91 -0.01 3.82 16
21 C -0.01 -0.41 5.13 84.86 0.44 0.03 16
22 N -0.94 -56.81 13.97 21.65 0.30 -56.50 16
23 Si 0.90 44.00 27.32 68.60 1.87 45.88 16
24 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16
25 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16
26 H -0.23 -10.55 4.69 99.48 0.47 -10.08 16
27 C 0.13 4.45 3.05 42.87 0.13 4.58 16
28 H 0.05 1.87 7.97 -2.39 -0.02 1.85 16
29 C -0.06 -1.74 1.36 -55.19 -0.08 -1.81 16
30 C -0.12 -3.64 7.12 71.98 0.51 -3.13 16
31 C -0.13 -3.59 9.29 71.98 0.67 -2.92 16
32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16
33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.10 1.73 6.78 -2.39 -0.02 1.72 16
37 H 0.23 2.38 7.88 -2.92 -0.02 2.35 16
38 H 0.41 7.20 6.82 -92.71 -0.63 6.57 16
39 H 0.06 1.71 8.03 -2.39 -0.02 1.69 16
40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16
41 H 0.07 2.06 8.14 -2.38 -0.02 2.05 16
42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.04 1.75 7.23 -2.39 -0.02 1.73 16
44 H 0.03 1.01 6.39 -2.39 -0.02 1.00 16
45 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
46 H 0.05 2.03 5.50 -2.38 -0.01 2.02 16
47 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16
48 H 0.06 1.72 5.90 -2.39 -0.01 1.71 16
49 H 0.06 1.54 8.05 -2.39 -0.02 1.53 16
50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
51 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -66.60 391.24 4.35 -62.25
By element:
Atomic # 1 Polarization: 20.21 SS G_CDS: 0.08 Total: 20.29 kcal
Atomic # 6 Polarization: -11.15 SS G_CDS: 5.98 Total: -5.16 kcal
Atomic # 7 Polarization: -105.24 SS G_CDS: -4.38 Total: -109.62 kcal
Atomic # 8 Polarization: -14.42 SS G_CDS: 0.79 Total: -13.63 kcal
Atomic # 14 Polarization: 44.00 SS G_CDS: 1.87 Total: 45.88 kcal
Total: -66.60 4.35 -62.25 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087307160.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.903 kcal
(2) G-P(sol) polarization free energy of solvation -66.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.254 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds