Wall clock time and date at job start Wed Apr 1 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 O 1.33490 * 126.82499 * 269.99500 * 3 2 1 5 5 N 1.20660 * 113.15638 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.29928 * 359.73109 * 5 4 3 7 7 C 1.37357 * 126.83183 * 90.00045 * 3 2 1 8 8 C 1.47396 * 128.56531 * 359.95909 * 7 3 2 9 9 O 1.21611 * 119.99946 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00108 * 180.02562 * 8 7 3 11 11 C 1.46509 * 119.99981 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.86800 * 23.72913 * 11 10 8 13 13 C 1.54152 * 113.71500 * 252.38559 * 11 10 8 14 14 H 1.09005 * 114.24237 * 104.28513 * 13 11 10 15 15 C 1.53057 * 111.69304 * 333.50412 * 13 11 10 16 16 C 1.53018 * 109.41210 * 213.59479 * 15 13 11 17 17 C 1.52584 * 109.04880 * 64.50844 * 16 15 13 18 18 N 1.45888 * 110.08460 * 302.95655 * 17 16 15 19 19 C 1.36944 * 118.48296 * 219.21263 * 18 17 16 20 20 H 1.08004 * 119.99893 * 150.32411 * 19 18 17 21 21 C 1.38809 * 120.00024 * 330.32802 * 19 18 17 22 22 N 1.31617 * 119.99945 * 138.60229 * 21 19 18 23 23 Si 1.86799 * 119.99707 * 318.32078 * 21 19 18 24 24 H 1.48503 * 109.47415 * 270.28019 * 23 21 19 25 25 H 1.48501 * 109.47174 * 30.27854 * 23 21 19 26 26 H 1.48505 * 109.47079 * 150.27910 * 23 21 19 27 27 C 1.45094 * 123.03343 * 38.93328 * 18 17 16 28 28 H 1.09005 * 112.25322 * 204.49296 * 27 18 17 29 29 C 1.53385 * 114.62742 * 74.04978 * 27 18 17 30 30 C 1.52999 * 113.68566 * 331.11394 * 29 27 18 31 31 C 1.53001 * 113.68719 * 102.14786 * 29 27 18 32 32 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47421 * 300.00294 * 1 2 3 34 34 H 1.08994 * 109.46781 * 60.00477 * 1 2 3 35 35 H 1.08999 * 109.47421 * 239.99706 * 2 1 3 36 36 H 1.09003 * 109.46926 * 119.99802 * 2 1 3 37 37 H 1.08002 * 127.33592 * 180.27269 * 6 5 4 38 38 H 0.97000 * 120.00431 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.48078 * 333.58251 * 15 13 11 40 40 H 1.09006 * 109.48363 * 93.59873 * 15 13 11 41 41 H 1.09009 * 109.56062 * 184.48229 * 16 15 13 42 42 H 1.08994 * 109.56293 * 304.70203 * 16 15 13 43 43 H 1.08996 * 109.40782 * 182.70454 * 17 16 15 44 44 H 1.09001 * 109.20725 * 63.07933 * 17 16 15 45 45 H 0.97000 * 120.00468 * 358.01708 * 22 21 19 46 46 H 1.09004 * 109.47258 * 91.89890 * 30 29 27 47 47 H 1.08996 * 109.47230 * 211.89785 * 30 29 27 48 48 H 1.09005 * 109.47285 * 331.89841 * 30 29 27 49 49 H 1.09003 * 109.46802 * 60.00170 * 31 29 27 50 50 H 1.08997 * 109.46873 * 180.02562 * 31 29 27 51 51 H 1.08994 * 109.47523 * 300.00061 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2990 2.1752 -1.0685 5 7 2.6903 3.2804 -0.7834 6 6 2.7503 3.4661 0.5020 7 6 2.3067 2.1972 1.0994 8 6 2.1821 1.8471 2.5258 9 8 1.7910 0.7418 2.8486 10 7 2.5016 2.7519 3.4721 11 6 2.3782 2.4037 4.8899 12 1 2.4273 1.3294 5.0680 13 6 1.1954 3.0941 5.5972 14 1 0.3413 2.4422 5.7808 15 6 0.8252 4.4162 4.9206 16 6 0.3359 5.4088 5.9774 17 6 1.4851 5.7309 6.9280 18 7 1.9942 4.5045 7.5323 19 6 2.3558 4.5284 8.8529 20 1 2.2737 3.6332 9.4515 21 6 2.8278 5.7032 9.4221 22 7 2.4403 6.0507 10.6310 23 14 4.0190 6.7868 8.4755 24 1 5.4124 6.3683 8.7729 25 1 3.7616 6.6509 7.0193 26 1 3.8300 8.2027 8.8816 27 6 2.1296 3.2592 6.8002 28 1 2.1056 2.3895 7.4570 29 6 3.2997 3.2243 5.8091 30 6 3.6674 4.5975 5.2436 31 6 4.5142 2.4458 6.3191 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.0613 4.3609 1.0207 38 1 2.8132 3.6336 3.2147 39 1 1.7012 4.8243 4.4164 40 1 0.0342 4.2423 4.1911 41 1 -0.0032 6.3231 5.4901 42 1 -0.4875 4.9677 6.5389 43 1 1.1302 6.4003 7.7116 44 1 2.2849 6.2193 6.3713 45 1 1.8027 5.5009 11.1128 46 1 4.4394 5.0516 5.8649 47 1 4.0407 4.4833 4.2259 48 1 2.7840 5.2362 5.2370 49 1 4.2265 1.4134 6.5182 50 1 5.3010 2.4652 5.5650 51 1 4.8803 2.9045 7.2375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087307161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:11 Heat of formation + Delta-G solvation = 82.242311 kcal Electronic energy + Delta-G solvation = -32785.297240 eV Core-core repulsion = 28690.016755 eV Total energy + Delta-G solvation = -4095.280486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.18073 -41.18145 -39.01937 -35.51390 -34.88727 -34.08959 -33.13493 -32.96791 -30.92075 -30.48937 -30.19679 -27.18402 -26.09210 -25.29198 -24.29264 -24.06412 -22.32919 -22.10460 -20.88050 -20.27326 -19.66594 -18.35187 -17.97708 -17.59491 -17.40708 -16.61989 -15.97361 -15.33974 -15.17798 -15.07744 -14.74939 -14.32914 -14.10951 -13.91960 -13.81365 -13.60471 -13.41138 -12.92255 -12.90535 -12.69478 -12.57475 -12.16917 -12.06649 -11.91569 -11.84686 -11.80182 -11.68256 -11.31408 -11.21157 -10.93473 -10.71009 -10.65653 -10.41050 -10.29418 -10.15128 -9.95178 -9.74470 -9.70524 -9.68204 -9.43895 -9.21782 -8.72763 -8.12337 -6.98553 -6.39664 -3.27115 0.82998 1.52731 2.51805 3.09738 3.16307 3.45727 3.52506 3.65980 3.95895 4.02320 4.34697 4.60467 4.67404 4.77957 4.85599 4.86209 4.93521 4.96321 5.06595 5.10955 5.19265 5.35115 5.43443 5.47517 5.50560 5.53026 5.63035 5.71599 5.74197 5.82252 5.88003 5.89749 5.92673 6.04591 6.08061 6.14019 6.26867 6.34125 6.35557 6.38054 6.46892 6.51225 6.64721 6.69613 6.83416 6.86460 6.94194 7.07281 7.48724 7.88145 8.12538 8.15779 8.47371 9.02564 9.69777 10.20351 10.95799 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.003068 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.283003 B = 9124.258435 C = 9356.572456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.050 3.950 4 O 0.091 5.909 5 N -0.355 5.355 6 C 0.022 3.978 7 C -0.260 4.260 8 C 0.595 3.405 9 O -0.537 6.537 10 N -0.700 5.700 11 C 0.129 3.871 12 H 0.112 0.888 13 C -0.132 4.132 14 H 0.074 0.926 15 C -0.103 4.103 16 C -0.137 4.137 17 C 0.137 3.863 18 N -0.568 5.568 19 C -0.379 4.379 20 H 0.061 0.939 21 C 0.014 3.986 22 N -0.888 5.888 23 Si 1.009 2.991 24 H -0.298 1.298 25 H -0.262 1.262 26 H -0.297 1.297 27 C 0.188 3.812 28 H 0.079 0.921 29 C -0.115 4.115 30 C -0.147 4.147 31 C -0.128 4.128 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.199 0.801 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.269 0.731 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.041 0.959 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -7.880 -20.701 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.014 4.014 4 O 0.031 5.969 5 N -0.060 5.060 6 C -0.161 4.161 7 C -0.268 4.268 8 C 0.382 3.618 9 O -0.415 6.415 10 N -0.350 5.350 11 C 0.024 3.976 12 H 0.130 0.870 13 C -0.154 4.154 14 H 0.093 0.907 15 C -0.140 4.140 16 C -0.176 4.176 17 C 0.012 3.988 18 N -0.287 5.287 19 C -0.507 4.507 20 H 0.079 0.921 21 C -0.192 4.192 22 N -0.523 5.523 23 Si 0.838 3.162 24 H -0.226 1.226 25 H -0.188 1.188 26 H -0.224 1.224 27 C 0.078 3.922 28 H 0.097 0.903 29 C -0.120 4.120 30 C -0.203 4.203 31 C -0.185 4.185 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.216 0.784 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.467 -6.511 -21.398 22.372 hybrid contribution -0.517 -1.067 0.581 1.320 sum -0.984 -7.578 -20.817 22.175 Atomic orbital electron populations 1.21709 0.92809 1.03091 1.02669 1.20397 0.97276 0.85434 1.05570 1.24930 0.95234 0.96143 0.85130 1.84573 1.61265 1.17639 1.33424 1.73661 1.16326 0.98494 1.17515 1.26394 1.00837 0.99272 0.89620 1.22203 1.13749 0.95140 0.95678 1.16814 0.77429 0.84627 0.82962 1.90771 1.47047 1.21569 1.82163 1.45876 1.66400 1.16258 1.06435 1.22873 0.97639 0.99888 0.77159 0.87009 1.23270 0.97443 0.96695 0.97948 0.90726 1.21486 1.00450 0.94715 0.97386 1.21851 0.99996 0.98086 0.97640 1.21178 0.93230 0.89197 0.95209 1.43350 1.71293 1.05104 1.08911 1.19926 1.46154 0.99825 0.84802 0.92092 1.26042 0.99133 0.96968 0.97076 1.70917 1.30577 1.35054 1.15786 0.84803 0.78292 0.75923 0.77158 1.22608 1.18825 1.22419 1.21120 0.90493 0.91013 0.89598 0.90335 1.23032 0.96688 0.94799 0.97449 1.22170 1.03491 0.96432 0.98219 1.21630 0.96800 0.99130 1.00944 0.90923 0.91671 0.92396 0.89268 0.86688 0.78381 0.76409 0.90971 0.93366 0.92603 0.92103 0.91929 0.94871 0.92089 0.91815 0.94641 0.89066 0.93193 0.93973 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.39 6.05 -27.88 -0.17 -0.56 16 3 C 0.05 0.51 6.80 -34.63 -0.24 0.27 16 4 O 0.09 0.97 11.06 18.66 0.21 1.17 16 5 N -0.35 -4.02 12.01 31.80 0.38 -3.63 16 6 C 0.02 0.22 11.95 -14.73 -0.18 0.04 16 7 C -0.26 -2.92 6.47 -102.90 -0.67 -3.58 16 8 C 0.60 7.75 7.81 -12.54 -0.10 7.66 16 9 O -0.54 -8.25 14.84 5.27 0.08 -8.18 16 10 N -0.70 -8.64 4.35 -53.87 -0.23 -8.88 16 11 C 0.13 1.85 3.62 -66.88 -0.24 1.61 16 12 H 0.11 1.70 7.30 -51.93 -0.38 1.32 16 13 C -0.13 -2.08 4.29 -89.88 -0.39 -2.47 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.10 -1.50 4.66 -26.69 -0.12 -1.62 16 16 C -0.14 -2.25 6.02 -26.94 -0.16 -2.41 16 17 C 0.14 2.74 3.73 -4.59 -0.02 2.72 16 18 N -0.57 -12.32 2.36 -167.08 -0.40 -12.72 16 19 C -0.38 -9.90 9.45 -15.06 -0.14 -10.05 16 20 H 0.06 1.74 8.04 -52.48 -0.42 1.32 16 21 C 0.01 0.38 4.56 -17.43 -0.08 0.30 16 22 N -0.89 -26.09 13.71 55.49 0.76 -25.33 16 23 Si 1.01 23.79 27.24 -169.99 -4.63 19.16 16 24 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.26 -5.45 3.72 56.52 0.21 -5.24 16 26 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.19 3.48 3.51 -68.39 -0.24 3.24 16 28 H 0.08 1.54 7.98 -51.93 -0.41 1.13 16 29 C -0.12 -1.82 1.35 -153.86 -0.21 -2.03 16 30 C -0.15 -2.24 6.54 37.16 0.24 -2.00 16 31 C -0.13 -1.97 9.16 37.16 0.34 -1.63 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 1.06 6.78 -51.93 -0.35 0.71 16 37 H 0.20 1.40 7.88 -52.49 -0.41 0.98 16 38 H 0.40 4.28 5.02 -40.82 -0.20 4.08 16 39 H 0.07 0.98 3.65 -51.93 -0.19 0.79 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.41 6.97 -51.93 -0.36 1.05 16 44 H 0.03 0.66 3.54 -51.93 -0.18 0.48 16 45 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 46 H 0.06 1.10 6.80 -51.93 -0.35 0.74 16 47 H 0.03 0.43 6.52 -51.93 -0.34 0.09 16 48 H 0.09 1.44 1.99 -51.93 -0.10 1.34 16 49 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -29.94 379.94 -7.80 -37.74 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.70 Total: 6.17 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.99 Total: -11.23 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.51 Total: -50.56 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.28 Total: -7.00 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.63 Total: 19.16 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.94 -7.80 -37.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087307161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.979 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds