Wall clock time and date at job start Wed Apr 1 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 O 1.33490 * 126.82499 * 269.99500 * 3 2 1 5 5 N 1.20660 * 113.15638 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.29928 * 359.73109 * 5 4 3 7 7 C 1.37357 * 126.83183 * 90.00045 * 3 2 1 8 8 C 1.47396 * 128.56531 * 359.95909 * 7 3 2 9 9 O 1.21611 * 119.99946 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00108 * 180.02562 * 8 7 3 11 11 C 1.46509 * 119.99981 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.86800 * 23.72913 * 11 10 8 13 13 C 1.54152 * 113.71500 * 252.38559 * 11 10 8 14 14 H 1.09005 * 114.24237 * 104.28513 * 13 11 10 15 15 C 1.53057 * 111.69304 * 333.50412 * 13 11 10 16 16 C 1.53018 * 109.41210 * 213.59479 * 15 13 11 17 17 C 1.52584 * 109.04880 * 64.50844 * 16 15 13 18 18 N 1.45888 * 110.08460 * 302.95655 * 17 16 15 19 19 C 1.36944 * 118.48296 * 219.21263 * 18 17 16 20 20 H 1.08004 * 119.99893 * 150.32411 * 19 18 17 21 21 C 1.38809 * 120.00024 * 330.32802 * 19 18 17 22 22 N 1.31617 * 119.99945 * 138.60229 * 21 19 18 23 23 Si 1.86799 * 119.99707 * 318.32078 * 21 19 18 24 24 H 1.48503 * 109.47415 * 270.28019 * 23 21 19 25 25 H 1.48501 * 109.47174 * 30.27854 * 23 21 19 26 26 H 1.48505 * 109.47079 * 150.27910 * 23 21 19 27 27 C 1.45094 * 123.03343 * 38.93328 * 18 17 16 28 28 H 1.09005 * 112.25322 * 204.49296 * 27 18 17 29 29 C 1.53385 * 114.62742 * 74.04978 * 27 18 17 30 30 C 1.52999 * 113.68566 * 331.11394 * 29 27 18 31 31 C 1.53001 * 113.68719 * 102.14786 * 29 27 18 32 32 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47421 * 300.00294 * 1 2 3 34 34 H 1.08994 * 109.46781 * 60.00477 * 1 2 3 35 35 H 1.08999 * 109.47421 * 239.99706 * 2 1 3 36 36 H 1.09003 * 109.46926 * 119.99802 * 2 1 3 37 37 H 1.08002 * 127.33592 * 180.27269 * 6 5 4 38 38 H 0.97000 * 120.00431 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.48078 * 333.58251 * 15 13 11 40 40 H 1.09006 * 109.48363 * 93.59873 * 15 13 11 41 41 H 1.09009 * 109.56062 * 184.48229 * 16 15 13 42 42 H 1.08994 * 109.56293 * 304.70203 * 16 15 13 43 43 H 1.08996 * 109.40782 * 182.70454 * 17 16 15 44 44 H 1.09001 * 109.20725 * 63.07933 * 17 16 15 45 45 H 0.97000 * 120.00468 * 358.01708 * 22 21 19 46 46 H 1.09004 * 109.47258 * 91.89890 * 30 29 27 47 47 H 1.08996 * 109.47230 * 211.89785 * 30 29 27 48 48 H 1.09005 * 109.47285 * 331.89841 * 30 29 27 49 49 H 1.09003 * 109.46802 * 60.00170 * 31 29 27 50 50 H 1.08997 * 109.46873 * 180.02562 * 31 29 27 51 51 H 1.08994 * 109.47523 * 300.00061 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2990 2.1752 -1.0685 5 7 2.6903 3.2804 -0.7834 6 6 2.7503 3.4661 0.5020 7 6 2.3067 2.1972 1.0994 8 6 2.1821 1.8471 2.5258 9 8 1.7910 0.7418 2.8486 10 7 2.5016 2.7519 3.4721 11 6 2.3782 2.4037 4.8899 12 1 2.4273 1.3294 5.0680 13 6 1.1954 3.0941 5.5972 14 1 0.3413 2.4422 5.7808 15 6 0.8252 4.4162 4.9206 16 6 0.3359 5.4088 5.9774 17 6 1.4851 5.7309 6.9280 18 7 1.9942 4.5045 7.5323 19 6 2.3558 4.5284 8.8529 20 1 2.2737 3.6332 9.4515 21 6 2.8278 5.7032 9.4221 22 7 2.4403 6.0507 10.6310 23 14 4.0190 6.7868 8.4755 24 1 5.4124 6.3683 8.7729 25 1 3.7616 6.6509 7.0193 26 1 3.8300 8.2027 8.8816 27 6 2.1296 3.2592 6.8002 28 1 2.1056 2.3895 7.4570 29 6 3.2997 3.2243 5.8091 30 6 3.6674 4.5975 5.2436 31 6 4.5142 2.4458 6.3191 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.0613 4.3609 1.0207 38 1 2.8132 3.6336 3.2147 39 1 1.7012 4.8243 4.4164 40 1 0.0342 4.2423 4.1911 41 1 -0.0032 6.3231 5.4901 42 1 -0.4875 4.9677 6.5389 43 1 1.1302 6.4003 7.7116 44 1 2.2849 6.2193 6.3713 45 1 1.8027 5.5009 11.1128 46 1 4.4394 5.0516 5.8649 47 1 4.0407 4.4833 4.2259 48 1 2.7840 5.2362 5.2370 49 1 4.2265 1.4134 6.5182 50 1 5.3010 2.4652 5.5650 51 1 4.8803 2.9045 7.2375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087307161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:10 Heat of formation + Delta-G solvation = 64.802821 kcal Electronic energy + Delta-G solvation = -32786.053473 eV Core-core repulsion = 28690.016755 eV Total energy + Delta-G solvation = -4096.036719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.94840 -42.48533 -40.11990 -37.01581 -35.63028 -35.00498 -34.68629 -34.14387 -32.62935 -31.58135 -31.23843 -28.43251 -27.25763 -26.79230 -25.37396 -24.94567 -23.84738 -23.21787 -21.94679 -21.42744 -20.94912 -19.57264 -19.18455 -18.82442 -18.69395 -17.45192 -17.24759 -16.71156 -16.32064 -16.13809 -15.84103 -15.58615 -15.36239 -15.20858 -15.11260 -14.75027 -14.48821 -14.30849 -14.09900 -13.94908 -13.67327 -13.54250 -13.41537 -13.13143 -12.95510 -12.83481 -12.74870 -12.51026 -12.46968 -12.20498 -11.86096 -11.84020 -11.70667 -11.69897 -11.46576 -11.40206 -11.14488 -11.07681 -10.89296 -10.84856 -10.53383 -10.17253 -9.86218 -8.90490 -8.46430 -5.35223 0.02066 0.77306 1.52897 1.59060 1.72184 1.77268 2.14329 2.20033 2.62314 2.98369 3.23177 3.29307 3.47572 3.56211 3.59177 3.64794 3.84300 3.95518 4.01373 4.17900 4.18703 4.27487 4.34866 4.37912 4.43597 4.46919 4.61946 4.65271 4.73866 4.76666 4.79237 4.83654 4.85399 4.96369 4.98364 4.99546 5.07552 5.07925 5.12208 5.21081 5.26709 5.29096 5.32095 5.33229 5.42889 5.53211 5.58771 5.73233 5.96849 6.35542 6.50239 7.01892 7.11585 7.16108 7.82730 8.20072 8.79658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.003068 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.283003 B = 9124.258435 C = 9356.572456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.059 3.941 4 O 0.085 5.915 5 N -0.375 5.375 6 C 0.035 3.965 7 C -0.281 4.281 8 C 0.600 3.400 9 O -0.564 6.564 10 N -0.690 5.690 11 C 0.151 3.849 12 H 0.104 0.896 13 C -0.127 4.127 14 H 0.067 0.933 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.134 3.866 18 N -0.577 5.577 19 C -0.362 4.362 20 H 0.019 0.981 21 C -0.038 4.038 22 N -0.930 5.930 23 Si 1.053 2.947 24 H -0.301 1.301 25 H -0.216 1.216 26 H -0.307 1.307 27 C 0.168 3.832 28 H 0.053 0.947 29 C -0.106 4.106 30 C -0.150 4.150 31 C -0.127 4.127 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.411 0.589 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.252 0.748 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -7.497 -25.254 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.005 4.005 4 O 0.029 5.971 5 N -0.083 5.083 6 C -0.148 4.148 7 C -0.288 4.288 8 C 0.387 3.613 9 O -0.444 6.444 10 N -0.341 5.341 11 C 0.045 3.955 12 H 0.122 0.878 13 C -0.148 4.148 14 H 0.085 0.915 15 C -0.133 4.133 16 C -0.169 4.169 17 C 0.010 3.990 18 N -0.297 5.297 19 C -0.491 4.491 20 H 0.036 0.964 21 C -0.237 4.237 22 N -0.569 5.569 23 Si 0.879 3.121 24 H -0.229 1.229 25 H -0.140 1.140 26 H -0.235 1.235 27 C 0.059 3.941 28 H 0.071 0.929 29 C -0.109 4.109 30 C -0.206 4.206 31 C -0.184 4.184 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.246 0.754 38 H 0.250 0.750 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.126 -6.156 -26.027 26.746 hybrid contribution -0.787 -1.354 2.032 2.565 sum -0.661 -7.510 -23.995 25.152 Atomic orbital electron populations 1.21687 0.92365 1.03925 1.01939 1.20502 0.97520 0.84463 1.06271 1.25318 0.93688 0.96631 0.84907 1.84575 1.61445 1.17664 1.33445 1.73662 1.17453 0.98870 1.18274 1.26856 0.99246 0.99554 0.89106 1.22053 1.15657 0.96341 0.94744 1.16964 0.76594 0.84087 0.83619 1.90770 1.48200 1.22776 1.82699 1.45655 1.66438 1.16803 1.05209 1.22408 0.95807 0.99042 0.78233 0.87824 1.23231 0.97257 0.97828 0.96526 0.91454 1.21484 1.01900 0.93037 0.96920 1.21775 0.97822 0.99993 0.97308 1.21228 0.94872 0.87876 0.95005 1.43331 1.71837 1.06771 1.07751 1.19733 1.44545 0.98087 0.86734 0.96359 1.27090 1.00306 0.99057 0.97272 1.71048 1.32445 1.35921 1.17459 0.84251 0.75616 0.73494 0.78707 1.22910 1.14018 1.23486 1.21240 0.93962 0.88601 0.90339 0.92920 1.22859 0.95730 0.95963 0.96384 1.22199 1.02967 0.95259 1.00186 1.21609 0.97321 0.99068 1.00402 0.89404 0.93893 0.91511 0.86581 0.87932 0.75386 0.75015 0.89006 0.91299 0.89519 0.93819 0.95193 0.93393 0.93855 0.93417 0.90652 0.89303 0.92845 0.91690 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.05 -0.67 6.05 29.85 0.18 -0.49 16 3 C 0.06 1.04 6.80 25.48 0.17 1.22 16 4 O 0.09 1.58 11.06 77.01 0.85 2.44 16 5 N -0.38 -7.28 12.01 -54.20 -0.65 -7.93 16 6 C 0.04 0.56 11.95 87.29 1.04 1.60 16 7 C -0.28 -5.37 6.47 -18.75 -0.12 -5.50 16 8 C 0.60 13.80 7.81 86.66 0.68 14.48 16 9 O -0.56 -16.27 14.84 -4.07 -0.06 -16.33 16 10 N -0.69 -14.36 4.35 -442.60 -1.93 -16.29 16 11 C 0.15 3.96 3.62 45.67 0.17 4.12 16 12 H 0.10 2.99 7.30 -2.39 -0.02 2.97 16 13 C -0.13 -3.78 4.29 -10.32 -0.04 -3.82 16 14 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 15 C -0.10 -2.44 4.66 30.62 0.14 -2.30 16 16 C -0.13 -3.95 6.02 30.46 0.18 -3.76 16 17 C 0.13 5.21 3.73 86.36 0.32 5.53 16 18 N -0.58 -25.25 2.36 -682.53 -1.61 -26.86 16 19 C -0.36 -19.77 9.45 84.03 0.79 -18.98 16 20 H 0.02 1.14 8.04 -2.91 -0.02 1.12 16 21 C -0.04 -2.13 4.56 84.86 0.39 -1.74 16 22 N -0.93 -57.54 13.71 21.65 0.30 -57.24 16 23 Si 1.05 48.59 27.24 68.60 1.87 50.46 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.22 -8.24 3.72 99.48 0.37 -7.87 16 26 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 27 C 0.17 6.18 3.51 45.45 0.16 6.34 16 28 H 0.05 2.17 7.98 -2.38 -0.02 2.16 16 29 C -0.11 -3.10 1.35 -51.76 -0.07 -3.17 16 30 C -0.15 -3.96 6.54 71.98 0.47 -3.49 16 31 C -0.13 -3.74 9.16 71.98 0.66 -3.08 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.72 6.78 -2.39 -0.02 1.70 16 37 H 0.23 1.94 7.88 -2.91 -0.02 1.91 16 38 H 0.41 6.60 5.02 -92.71 -0.47 6.13 16 39 H 0.09 2.00 3.65 -2.39 -0.01 1.99 16 40 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.03 1.35 6.97 -2.39 -0.02 1.33 16 44 H 0.05 1.73 3.54 -2.39 -0.01 1.72 16 45 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 46 H 0.05 1.45 6.80 -2.38 -0.02 1.43 16 47 H 0.07 1.40 6.52 -2.39 -0.02 1.39 16 48 H 0.09 2.39 1.99 -2.38 0.00 2.39 16 49 H 0.05 1.51 7.95 -2.39 -0.02 1.49 16 50 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.64 379.94 4.73 -64.91 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.13 Total: 20.97 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 5.84 Total: -14.15 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.89 Total: -108.31 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.79 Total: -13.89 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.87 Total: 50.46 kcal Total: -69.64 4.73 -64.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087307161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.714 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds