Wall clock time and date at job start Wed Apr 1 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47397 * 2 1 4 4 O 1.33490 * 126.83036 * 270.02831 * 3 2 1 5 5 N 1.20662 * 113.15481 * 179.97438 * 4 3 2 6 6 C 1.30010 * 112.30295 * 359.71742 * 5 4 3 7 7 C 1.37363 * 126.82673 * 90.00310 * 3 2 1 8 8 C 1.47395 * 128.56640 * 359.97438 * 7 3 2 9 9 O 1.21612 * 119.99799 * 0.02562 * 8 7 3 10 10 N 1.34776 * 120.00127 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99964 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.93088 * 26.82184 * 11 10 8 13 13 C 1.54160 * 113.63727 * 255.49726 * 11 10 8 14 14 H 1.09005 * 114.24786 * 26.68568 * 13 11 10 15 15 C 1.53059 * 111.68927 * 157.46841 * 13 11 10 16 16 C 1.51262 * 110.33082 * 145.18170 * 15 13 11 17 17 C 1.52945 * 109.35978 * 296.33877 * 16 15 13 18 18 N 1.45888 * 109.88998 * 56.84631 * 17 16 15 19 19 C 1.36944 * 118.48041 * 140.65980 * 18 17 16 20 20 H 1.07999 * 119.99428 * 206.63197 * 19 18 17 21 21 C 1.38810 * 120.00287 * 26.63495 * 19 18 17 22 22 N 1.31625 * 120.00004 * 16.21926 * 21 19 18 23 23 Si 1.86793 * 120.00066 * 196.22007 * 21 19 18 24 24 H 1.48502 * 109.47178 * 84.95577 * 23 21 19 25 25 H 1.48500 * 109.47355 * 204.95584 * 23 21 19 26 26 H 1.48494 * 109.47410 * 324.95653 * 23 21 19 27 27 C 1.45085 * 123.03430 * 320.68233 * 18 17 16 28 28 H 1.09000 * 112.25752 * 157.07502 * 27 18 17 29 29 C 1.53389 * 113.74459 * 286.71438 * 27 18 17 30 30 C 1.53000 * 113.68588 * 257.59779 * 29 27 18 31 31 C 1.52997 * 113.68661 * 28.73003 * 29 27 18 32 32 H 1.08996 * 109.47422 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46698 * 299.99626 * 1 2 3 34 34 H 1.08997 * 109.47408 * 59.99218 * 1 2 3 35 35 H 1.08997 * 109.46788 * 239.99953 * 2 1 3 36 36 H 1.08998 * 109.47085 * 120.00346 * 2 1 3 37 37 H 1.08003 * 127.33630 * 180.30322 * 6 5 4 38 38 H 0.96996 * 119.99904 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.48274 * 266.38784 * 15 13 11 40 40 H 1.09008 * 109.47613 * 26.42077 * 15 13 11 41 41 H 1.08999 * 109.75176 * 176.12464 * 16 15 13 42 42 H 1.08993 * 109.03215 * 56.11448 * 16 15 13 43 43 H 1.09003 * 109.40205 * 296.71981 * 17 16 15 44 44 H 1.08997 * 109.33274 * 176.93587 * 17 16 15 45 45 H 0.96993 * 120.00143 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47020 * 59.99971 * 30 29 27 47 47 H 1.09000 * 109.47023 * 179.97438 * 30 29 27 48 48 H 1.09001 * 109.47100 * 299.99717 * 30 29 27 49 49 H 1.09000 * 109.47277 * 28.54456 * 31 29 27 50 50 H 1.09002 * 109.46973 * 148.54012 * 31 29 27 51 51 H 1.08997 * 109.47401 * 268.54053 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6892 3.2808 -0.7832 6 6 2.7488 3.4666 0.5022 7 6 2.3070 2.1970 1.0995 8 6 2.1826 1.8467 2.5258 9 8 1.7917 0.7413 2.8486 10 7 2.5031 2.7511 3.4723 11 6 2.3801 2.4027 4.8900 12 1 2.4819 1.3334 5.0749 13 6 1.1536 3.0347 5.5776 14 1 0.3247 3.2513 4.9036 15 6 0.7414 2.2542 6.8280 16 6 0.2178 3.1980 7.8878 17 6 1.3397 4.1403 8.3266 18 7 1.8648 4.8589 7.1707 19 6 2.1940 6.1801 7.3174 20 1 2.1674 6.8412 6.4638 21 6 2.5620 6.6695 8.5632 22 7 2.9045 5.8362 9.5227 23 14 2.5709 8.5107 8.8779 24 1 1.2070 8.9536 9.2637 25 1 3.5212 8.8206 9.9761 26 1 2.9916 9.2218 7.6440 27 6 2.0540 4.2387 5.8728 28 1 2.0627 4.9689 5.0636 29 6 3.2454 3.2743 5.8169 30 6 4.4804 3.8623 5.1313 31 6 3.5654 2.6141 7.1595 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.0588 4.3617 1.0210 38 1 2.8153 3.6326 3.2148 39 1 -0.0257 1.5257 6.5654 40 1 1.6097 1.7369 7.2362 41 1 -0.1365 2.6276 8.7464 42 1 -0.6048 3.7791 7.4711 43 1 2.1400 3.5608 8.7869 44 1 0.9481 4.8552 9.0502 45 1 3.1613 6.1781 10.3933 46 1 4.8072 4.7510 5.6713 47 1 5.2817 3.1233 5.1300 48 1 4.2324 4.1316 4.1046 49 1 2.6541 2.5366 7.7526 50 1 3.9722 1.6177 6.9866 51 1 4.2977 3.2175 7.6958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087307162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:14 Heat of formation + Delta-G solvation = 80.418513 kcal Electronic energy + Delta-G solvation = -32489.672775 eV Core-core repulsion = 28394.313204 eV Total energy + Delta-G solvation = -4095.359572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.12310 -40.98509 -38.96627 -35.49210 -34.82752 -34.00426 -33.17791 -32.60144 -30.59972 -30.32897 -29.86423 -26.89525 -25.91391 -25.28280 -24.24323 -24.05488 -22.47894 -21.89385 -20.98675 -20.41668 -19.29184 -18.19570 -17.90238 -17.47610 -16.87457 -16.50358 -15.90293 -15.11134 -14.96608 -14.79750 -14.63612 -14.37456 -13.93081 -13.84586 -13.78457 -13.56833 -13.12950 -12.86042 -12.71280 -12.53632 -12.17867 -12.13125 -12.09780 -11.79417 -11.65015 -11.37251 -11.21169 -11.15812 -11.04575 -10.87417 -10.78990 -10.62449 -10.52397 -10.22761 -10.10842 -10.02224 -9.73827 -9.67110 -9.55043 -9.36821 -9.10107 -8.64866 -8.36500 -6.66336 -5.80267 -3.23971 0.88281 1.59045 2.56802 3.15081 3.18511 3.34901 3.42314 3.42796 4.02641 4.08142 4.40020 4.46727 4.72805 4.90257 4.91865 4.97727 5.04737 5.12899 5.29146 5.33391 5.40669 5.45833 5.56080 5.57814 5.60645 5.67832 5.77730 5.79957 5.91333 5.93190 6.00446 6.10035 6.16704 6.22807 6.29303 6.42639 6.44228 6.54135 6.56835 6.61080 6.72951 6.78096 6.81439 6.95764 7.10340 7.19964 7.41631 7.55064 7.71906 7.81123 7.94123 8.19196 8.43372 9.22753 9.88128 10.31942 11.25674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003008 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.788192 B = 9305.372363 C =10127.022585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.049 3.951 4 O 0.090 5.910 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.260 4.260 8 C 0.597 3.403 9 O -0.535 6.535 10 N -0.695 5.695 11 C 0.125 3.875 12 H 0.096 0.904 13 C -0.127 4.127 14 H 0.069 0.931 15 C -0.107 4.107 16 C -0.145 4.145 17 C 0.177 3.823 18 N -0.569 5.569 19 C -0.263 4.263 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.187 3.813 28 H 0.069 0.931 29 C -0.111 4.111 30 C -0.126 4.126 31 C -0.134 4.134 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.201 0.799 38 H 0.400 0.600 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.253 0.747 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.095 0.905 50 H 0.032 0.968 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -10.492 -14.853 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.015 4.015 4 O 0.031 5.969 5 N -0.061 5.061 6 C -0.160 4.160 7 C -0.267 4.267 8 C 0.383 3.617 9 O -0.414 6.414 10 N -0.344 5.344 11 C 0.019 3.981 12 H 0.114 0.886 13 C -0.148 4.148 14 H 0.087 0.913 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.053 3.947 18 N -0.287 5.287 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.076 3.924 28 H 0.087 0.913 29 C -0.116 4.116 30 C -0.184 4.184 31 C -0.191 4.191 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.218 0.782 38 H 0.237 0.763 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.113 0.887 50 H 0.051 0.949 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.759 -10.474 -15.491 18.783 hybrid contribution 0.257 1.469 0.793 1.689 sum -1.502 -9.006 -14.698 17.303 Atomic orbital electron populations 1.21712 0.92827 1.03063 1.02692 1.20392 0.97264 0.85451 1.05551 1.24918 0.95286 0.96138 0.85143 1.84573 1.61308 1.17629 1.33406 1.73658 1.16405 0.98456 1.17544 1.26427 1.00691 0.99285 0.89583 1.22171 1.13783 0.95170 0.95568 1.16754 0.77447 0.84560 0.82896 1.90772 1.46929 1.21520 1.82141 1.45593 1.66423 1.16381 1.06048 1.22370 0.98069 0.99532 0.78086 0.88568 1.23191 0.96533 0.98338 0.96734 0.91291 1.21224 1.01012 0.97561 0.94644 1.21751 1.00546 0.98584 0.97464 1.20665 0.91948 0.93281 0.88855 1.43226 1.71608 1.08591 1.05274 1.19199 1.40301 0.84753 0.94998 0.91863 1.24964 0.98983 0.97398 0.97660 1.70053 1.47607 1.32815 1.03854 0.86374 0.77391 0.85788 0.77550 1.21500 1.21828 1.20639 1.21277 0.90895 0.90660 0.89535 0.91260 1.23007 0.96257 0.97644 0.94651 1.21583 0.97129 1.01021 0.98631 1.22036 1.03961 0.97537 0.95543 0.90943 0.91642 0.92406 0.89287 0.86690 0.78236 0.76347 0.93360 0.90403 0.92784 0.93051 0.94127 0.91444 0.93682 0.91536 0.93831 0.94224 0.88715 0.94908 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.05 -0.41 6.05 -27.88 -0.17 -0.57 16 3 C 0.05 0.53 6.80 -34.63 -0.24 0.29 16 4 O 0.09 1.01 11.06 18.66 0.21 1.21 16 5 N -0.36 -4.22 12.01 31.81 0.38 -3.84 16 6 C 0.02 0.24 11.95 -14.73 -0.18 0.07 16 7 C -0.26 -3.06 6.47 -102.89 -0.67 -3.73 16 8 C 0.60 8.20 7.81 -12.53 -0.10 8.10 16 9 O -0.54 -8.57 14.88 5.27 0.08 -8.49 16 10 N -0.69 -9.24 4.74 -53.87 -0.26 -9.50 16 11 C 0.12 1.92 3.30 -66.88 -0.22 1.70 16 12 H 0.10 1.58 7.42 -51.93 -0.39 1.19 16 13 C -0.13 -2.13 4.15 -89.87 -0.37 -2.50 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.11 -1.77 5.12 -27.58 -0.14 -1.91 16 16 C -0.14 -2.64 5.96 -27.64 -0.16 -2.80 16 17 C 0.18 3.93 3.99 -4.40 -0.02 3.91 16 18 N -0.57 -12.92 2.64 -166.87 -0.44 -13.36 16 19 C -0.26 -6.71 9.46 -15.06 -0.14 -6.85 16 20 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 21 C 0.01 0.24 4.85 -17.43 -0.08 0.15 16 22 N -0.90 -24.46 11.07 55.49 0.61 -23.85 16 23 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.19 3.53 3.43 -68.39 -0.23 3.30 16 28 H 0.07 1.31 7.95 -51.93 -0.41 0.89 16 29 C -0.11 -1.88 1.33 -153.85 -0.20 -2.09 16 30 C -0.13 -1.97 8.99 37.16 0.33 -1.64 16 31 C -0.13 -2.42 7.23 37.16 0.27 -2.16 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.10 6.78 -51.93 -0.35 0.75 16 37 H 0.20 1.55 7.88 -52.48 -0.41 1.14 16 38 H 0.40 4.65 6.14 -40.82 -0.25 4.40 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.29 4.64 -51.92 -0.24 1.05 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.96 5.55 -51.93 -0.29 0.67 16 44 H 0.07 1.70 6.57 -51.93 -0.34 1.36 16 45 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.52 5.85 -51.93 -0.30 0.21 16 49 H 0.09 1.79 1.91 -51.93 -0.10 1.69 16 50 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -28.85 388.58 -8.25 -37.10 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.70 Total: 6.44 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.96 Total: -7.49 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.30 Total: -50.54 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.28 Total: -7.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.85 -8.25 -37.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087307162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.515 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds