Wall clock time and date at job start Wed Apr 1 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46769 * 2 1 4 4 O 1.33494 * 126.82779 * 270.10459 * 3 2 1 5 5 N 1.20653 * 113.15517 * 180.30565 * 4 3 2 6 6 C 1.30020 * 112.30455 * 359.75468 * 5 4 3 7 7 C 1.37357 * 126.82858 * 90.00484 * 3 2 1 8 8 C 1.47405 * 128.56288 * 359.97438 * 7 3 2 9 9 O 1.21604 * 120.00144 * 359.70062 * 8 7 3 10 10 N 1.34779 * 119.99697 * 179.70149 * 8 7 3 11 11 C 1.46491 * 120.00024 * 180.02562 * 10 8 7 12 12 H 1.09003 * 113.34772 * 22.06518 * 11 10 8 13 13 C 1.50006 * 114.12368 * 249.14577 * 11 10 8 14 14 H 1.09005 * 112.50171 * 170.16751 * 13 11 10 15 15 C 1.51200 * 126.17976 * 27.77047 * 13 11 10 16 16 C 1.54091 * 106.19280 * 198.56778 * 15 13 11 17 17 C 1.52506 * 112.67056 * 55.43788 * 16 15 13 18 18 N 1.47782 * 111.33497 * 312.91140 * 17 16 15 19 19 C 1.36935 * 122.77717 * 231.52806 * 18 17 16 20 20 H 1.07995 * 119.99955 * 210.56472 * 19 18 17 21 21 C 1.38808 * 119.99830 * 30.56050 * 19 18 17 22 22 N 1.31618 * 120.00637 * 17.08960 * 21 19 18 23 23 Si 1.86809 * 119.99993 * 197.09323 * 21 19 18 24 24 H 1.48498 * 109.47218 * 89.99939 * 23 21 19 25 25 H 1.48497 * 109.47187 * 210.00026 * 23 21 19 26 26 H 1.48497 * 109.46762 * 329.99911 * 23 21 19 27 27 C 1.45383 * 114.04255 * 52.87358 * 18 17 16 28 28 H 1.08998 * 112.09529 * 58.42065 * 27 18 17 29 29 C 1.49972 * 126.66602 * 203.62824 * 27 18 17 30 30 C 1.52998 * 114.08321 * 252.43486 * 29 27 18 31 31 C 1.52998 * 114.08426 * 24.85682 * 29 27 18 32 32 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46901 * 299.99646 * 1 2 3 34 34 H 1.08997 * 109.47751 * 59.99701 * 1 2 3 35 35 H 1.09000 * 109.46901 * 240.00354 * 2 1 3 36 36 H 1.09002 * 109.47194 * 119.99858 * 2 1 3 37 37 H 1.07990 * 127.33867 * 179.97438 * 6 5 4 38 38 H 0.97006 * 119.99811 * 0.02562 * 10 8 7 39 39 H 1.08999 * 110.10108 * 317.73744 * 15 13 11 40 40 H 1.08993 * 110.09983 * 79.28372 * 15 13 11 41 41 H 1.08998 * 108.84206 * 176.26053 * 16 15 13 42 42 H 1.09000 * 108.84390 * 294.61588 * 16 15 13 43 43 H 1.08997 * 108.99460 * 73.82658 * 17 16 15 44 44 H 1.09000 * 108.99712 * 192.67316 * 17 16 15 45 45 H 0.96997 * 120.00735 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.47582 * 60.00241 * 30 29 27 47 47 H 1.09000 * 109.47116 * 179.97438 * 30 29 27 48 48 H 1.09003 * 109.47287 * 300.00031 * 30 29 27 49 49 H 1.09001 * 109.47106 * 54.38596 * 31 29 27 50 50 H 1.08994 * 109.47054 * 174.38506 * 31 29 27 51 51 H 1.09000 * 109.47325 * 294.39162 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2971 2.1760 -1.0685 5 7 2.6939 3.2791 -0.7834 6 6 2.7609 3.4624 0.5021 7 6 2.3068 2.1972 1.0995 8 6 2.1825 1.8468 2.5258 9 8 1.7861 0.7434 2.8486 10 7 2.5082 2.7494 3.4723 11 6 2.3852 2.4011 4.8899 12 1 2.3991 1.3267 5.0735 13 6 1.2893 3.1316 5.6079 14 1 1.1077 2.7342 6.6065 15 6 0.0187 3.6677 4.9879 16 6 -0.5342 4.7123 5.9765 17 6 0.4801 5.8014 6.3093 18 7 1.8016 5.2245 6.6331 19 6 2.4920 5.5457 7.7712 20 1 3.5719 5.5347 7.7689 21 6 1.8038 5.8854 8.9278 22 7 0.5283 5.5835 9.0475 23 14 2.6879 6.7712 10.3147 24 1 2.5771 8.2385 10.1149 25 1 2.0692 6.4003 11.6127 26 1 4.1201 6.3789 10.3189 27 6 2.3135 4.3129 5.6229 28 1 2.4081 4.7919 4.6484 29 6 3.3192 3.2197 5.8301 30 6 4.6971 3.5182 5.2359 31 6 3.3800 2.6911 7.2646 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0821 4.3535 1.0208 38 1 2.8240 3.6297 3.2147 39 1 0.2391 4.1384 4.0298 40 1 -0.7010 2.8606 4.8516 41 1 -1.4186 5.1764 5.5401 42 1 -0.8230 4.2067 6.8980 43 1 0.5747 6.4712 5.4547 44 1 0.1217 6.3698 7.1675 45 1 0.0474 5.8205 9.8558 46 1 5.1036 4.4193 5.6953 47 1 5.3656 2.6792 5.4291 48 1 4.6041 3.6689 4.1604 49 1 2.3839 2.3806 7.5799 50 1 4.0574 1.8384 7.3091 51 1 3.7419 3.4777 7.9267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087307163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:18 Heat of formation + Delta-G solvation = 90.854632 kcal Electronic energy + Delta-G solvation = -32702.381054 eV Core-core repulsion = 28607.474027 eV Total energy + Delta-G solvation = -4094.907028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.10634 -41.17904 -38.85050 -35.39078 -34.83299 -34.01493 -33.13581 -32.74193 -30.56058 -30.20950 -29.30297 -27.01370 -26.01008 -25.39607 -24.22703 -24.15139 -22.39583 -21.88279 -20.52571 -20.44465 -19.12802 -18.25612 -17.98823 -17.84116 -16.69375 -16.54853 -15.56985 -15.01152 -14.91785 -14.66757 -14.59652 -14.09542 -13.87982 -13.81522 -13.71814 -13.66826 -13.27982 -12.83525 -12.74859 -12.56496 -12.43213 -12.09495 -11.97843 -11.76694 -11.55736 -11.32045 -11.16071 -11.15085 -10.99933 -10.92201 -10.68481 -10.60637 -10.46701 -10.25621 -10.20320 -10.01810 -9.87302 -9.65002 -9.51831 -9.27841 -8.91433 -8.65350 -8.41525 -6.55690 -5.79636 -3.22554 0.90594 1.60676 2.58505 3.18173 3.19102 3.34959 3.42669 3.43611 4.03987 4.09918 4.42162 4.45807 4.74448 4.75356 4.93148 4.97319 4.99302 5.13173 5.21025 5.29543 5.42589 5.43925 5.57487 5.59859 5.60306 5.80169 5.84745 5.89851 5.92222 5.96446 6.00869 6.09689 6.10310 6.32556 6.33839 6.38356 6.48613 6.53870 6.60282 6.65640 6.73230 6.80085 6.95315 7.03734 7.07791 7.26287 7.46884 7.55661 7.67336 7.76402 7.95768 8.21910 8.43744 9.14742 9.80896 10.46239 11.27631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003006 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.722203 B = 9311.295909 C = 9529.438471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.049 3.951 4 O 0.090 5.910 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.258 4.258 8 C 0.599 3.401 9 O -0.534 6.534 10 N -0.691 5.691 11 C 0.137 3.863 12 H 0.099 0.901 13 C -0.166 4.166 14 H 0.108 0.892 15 C -0.084 4.084 16 C -0.122 4.122 17 C 0.157 3.843 18 N -0.569 5.569 19 C -0.238 4.238 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.145 3.855 28 H 0.044 0.956 29 C -0.063 4.063 30 C -0.134 4.134 31 C -0.116 4.116 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.200 0.800 38 H 0.399 0.601 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.067 0.933 43 H -0.007 1.007 44 H 0.097 0.903 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.037 0.963 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -8.462 -15.626 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.015 4.015 4 O 0.031 5.969 5 N -0.061 5.061 6 C -0.160 4.160 7 C -0.266 4.266 8 C 0.385 3.615 9 O -0.412 6.412 10 N -0.341 5.341 11 C 0.031 3.969 12 H 0.117 0.883 13 C -0.187 4.187 14 H 0.125 0.875 15 C -0.122 4.122 16 C -0.161 4.161 17 C 0.032 3.968 18 N -0.290 5.290 19 C -0.367 4.367 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.037 3.963 28 H 0.061 0.939 29 C -0.064 4.064 30 C -0.191 4.191 31 C -0.173 4.173 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.217 0.783 38 H 0.235 0.765 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.010 0.990 44 H 0.115 0.885 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.593 -8.433 -16.263 18.502 hybrid contribution 0.412 1.016 1.416 1.790 sum 3.005 -7.418 -14.847 16.867 Atomic orbital electron populations 1.21714 0.92811 1.03065 1.02739 1.20394 0.97293 0.85426 1.05511 1.24918 0.95315 0.96124 0.85128 1.84569 1.61213 1.17727 1.33411 1.73655 1.16273 0.98616 1.17536 1.26411 1.00706 0.99306 0.89587 1.22163 1.13640 0.95222 0.95564 1.16709 0.77458 0.84460 0.82836 1.90772 1.46724 1.21648 1.82095 1.45480 1.66375 1.16359 1.05842 1.21637 0.97759 0.99221 0.78243 0.88335 1.23347 0.95247 0.99819 1.00268 0.87463 1.21034 0.96224 0.97399 0.97558 1.21819 0.97922 0.97792 0.98585 1.20779 0.84746 0.92989 0.98258 1.43648 1.17515 1.49302 1.18584 1.18946 0.90031 1.40678 0.87087 0.91741 1.24964 0.96258 1.01424 0.96815 1.69947 1.08699 1.48052 1.27141 0.86403 0.79119 0.79973 0.81945 1.21669 1.21884 1.20517 1.21745 0.93661 0.88577 0.92315 0.93922 1.21870 0.92977 0.95742 0.95846 1.21685 0.96401 1.01541 0.99519 1.21594 1.02039 1.00285 0.93392 0.90956 0.91585 0.92410 0.89313 0.86697 0.78314 0.76470 0.93861 0.94147 0.94367 0.91403 0.98963 0.88508 0.93771 0.92095 0.93030 0.93510 0.91632 0.94406 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.41 6.05 -27.88 -0.17 -0.58 16 3 C 0.05 0.53 6.80 -34.63 -0.24 0.30 16 4 O 0.09 1.02 11.06 18.65 0.21 1.22 16 5 N -0.36 -4.25 12.01 31.81 0.38 -3.87 16 6 C 0.02 0.24 11.95 -14.72 -0.18 0.07 16 7 C -0.26 -3.08 6.47 -102.89 -0.67 -3.75 16 8 C 0.60 8.32 7.81 -12.53 -0.10 8.22 16 9 O -0.53 -8.67 14.84 5.27 0.08 -8.60 16 10 N -0.69 -9.27 4.18 -58.75 -0.25 -9.52 16 11 C 0.14 2.13 3.98 -71.84 -0.29 1.85 16 12 H 0.10 1.62 7.46 -51.93 -0.39 1.24 16 13 C -0.17 -3.00 2.96 -95.82 -0.28 -3.28 16 14 H 0.11 2.24 5.88 -51.93 -0.31 1.93 16 15 C -0.08 -1.52 5.94 -27.07 -0.16 -1.68 16 16 C -0.12 -2.47 5.89 -26.41 -0.16 -2.62 16 17 C 0.16 3.55 5.75 -3.59 -0.02 3.53 16 18 N -0.57 -12.93 2.85 -169.93 -0.48 -13.41 16 19 C -0.24 -5.93 7.75 -15.06 -0.12 -6.05 16 20 H 0.06 1.61 7.30 -52.49 -0.38 1.22 16 21 C 0.00 0.11 5.05 -17.43 -0.09 0.02 16 22 N -0.89 -24.16 11.21 55.49 0.62 -23.54 16 23 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.15 2.70 2.97 -72.13 -0.21 2.49 16 28 H 0.04 0.77 6.51 -51.93 -0.34 0.43 16 29 C -0.06 -1.03 1.39 -159.14 -0.22 -1.25 16 30 C -0.13 -1.88 9.22 37.16 0.34 -1.53 16 31 C -0.12 -2.03 8.41 37.16 0.31 -1.72 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.11 1.12 6.78 -51.93 -0.35 0.77 16 37 H 0.20 1.58 7.88 -52.49 -0.41 1.17 16 38 H 0.40 4.74 5.72 -40.82 -0.23 4.51 16 39 H 0.04 0.74 7.97 -51.93 -0.41 0.33 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H -0.01 -0.16 8.14 -51.93 -0.42 -0.59 16 44 H 0.10 2.48 5.68 -51.93 -0.30 2.19 16 45 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.57 6.46 -51.93 -0.34 0.23 16 49 H 0.06 1.26 5.92 -51.93 -0.31 0.95 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.08 1.64 6.14 -51.93 -0.32 1.33 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -28.42 392.91 -8.29 -36.71 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.87 Total: 6.19 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.87 Total: -6.83 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.28 Total: -50.34 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.28 Total: -7.37 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.42 -8.29 -36.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087307163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.562 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds