Wall clock time and date at job start Wed Apr 1 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46769 * 2 1 4 4 O 1.33494 * 126.82779 * 270.10459 * 3 2 1 5 5 N 1.20653 * 113.15517 * 180.30565 * 4 3 2 6 6 C 1.30020 * 112.30455 * 359.75468 * 5 4 3 7 7 C 1.37357 * 126.82858 * 90.00484 * 3 2 1 8 8 C 1.47405 * 128.56288 * 359.97438 * 7 3 2 9 9 O 1.21604 * 120.00144 * 359.70062 * 8 7 3 10 10 N 1.34779 * 119.99697 * 179.70149 * 8 7 3 11 11 C 1.46491 * 120.00024 * 180.02562 * 10 8 7 12 12 H 1.09003 * 113.34772 * 22.06518 * 11 10 8 13 13 C 1.50006 * 114.12368 * 249.14577 * 11 10 8 14 14 H 1.09005 * 112.50171 * 170.16751 * 13 11 10 15 15 C 1.51200 * 126.17976 * 27.77047 * 13 11 10 16 16 C 1.54091 * 106.19280 * 198.56778 * 15 13 11 17 17 C 1.52506 * 112.67056 * 55.43788 * 16 15 13 18 18 N 1.47782 * 111.33497 * 312.91140 * 17 16 15 19 19 C 1.36935 * 122.77717 * 231.52806 * 18 17 16 20 20 H 1.07995 * 119.99955 * 210.56472 * 19 18 17 21 21 C 1.38808 * 119.99830 * 30.56050 * 19 18 17 22 22 N 1.31618 * 120.00637 * 17.08960 * 21 19 18 23 23 Si 1.86809 * 119.99993 * 197.09323 * 21 19 18 24 24 H 1.48498 * 109.47218 * 89.99939 * 23 21 19 25 25 H 1.48497 * 109.47187 * 210.00026 * 23 21 19 26 26 H 1.48497 * 109.46762 * 329.99911 * 23 21 19 27 27 C 1.45383 * 114.04255 * 52.87358 * 18 17 16 28 28 H 1.08998 * 112.09529 * 58.42065 * 27 18 17 29 29 C 1.49972 * 126.66602 * 203.62824 * 27 18 17 30 30 C 1.52998 * 114.08321 * 252.43486 * 29 27 18 31 31 C 1.52998 * 114.08426 * 24.85682 * 29 27 18 32 32 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46901 * 299.99646 * 1 2 3 34 34 H 1.08997 * 109.47751 * 59.99701 * 1 2 3 35 35 H 1.09000 * 109.46901 * 240.00354 * 2 1 3 36 36 H 1.09002 * 109.47194 * 119.99858 * 2 1 3 37 37 H 1.07990 * 127.33867 * 179.97438 * 6 5 4 38 38 H 0.97006 * 119.99811 * 0.02562 * 10 8 7 39 39 H 1.08999 * 110.10108 * 317.73744 * 15 13 11 40 40 H 1.08993 * 110.09983 * 79.28372 * 15 13 11 41 41 H 1.08998 * 108.84206 * 176.26053 * 16 15 13 42 42 H 1.09000 * 108.84390 * 294.61588 * 16 15 13 43 43 H 1.08997 * 108.99460 * 73.82658 * 17 16 15 44 44 H 1.09000 * 108.99712 * 192.67316 * 17 16 15 45 45 H 0.96997 * 120.00735 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.47582 * 60.00241 * 30 29 27 47 47 H 1.09000 * 109.47116 * 179.97438 * 30 29 27 48 48 H 1.09003 * 109.47287 * 300.00031 * 30 29 27 49 49 H 1.09001 * 109.47106 * 54.38596 * 31 29 27 50 50 H 1.08994 * 109.47054 * 174.38506 * 31 29 27 51 51 H 1.09000 * 109.47325 * 294.39162 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2971 2.1760 -1.0685 5 7 2.6939 3.2791 -0.7834 6 6 2.7609 3.4624 0.5021 7 6 2.3068 2.1972 1.0995 8 6 2.1825 1.8468 2.5258 9 8 1.7861 0.7434 2.8486 10 7 2.5082 2.7494 3.4723 11 6 2.3852 2.4011 4.8899 12 1 2.3991 1.3267 5.0735 13 6 1.2893 3.1316 5.6079 14 1 1.1077 2.7342 6.6065 15 6 0.0187 3.6677 4.9879 16 6 -0.5342 4.7123 5.9765 17 6 0.4801 5.8014 6.3093 18 7 1.8016 5.2245 6.6331 19 6 2.4920 5.5457 7.7712 20 1 3.5719 5.5347 7.7689 21 6 1.8038 5.8854 8.9278 22 7 0.5283 5.5835 9.0475 23 14 2.6879 6.7712 10.3147 24 1 2.5771 8.2385 10.1149 25 1 2.0692 6.4003 11.6127 26 1 4.1201 6.3789 10.3189 27 6 2.3135 4.3129 5.6229 28 1 2.4081 4.7919 4.6484 29 6 3.3192 3.2197 5.8301 30 6 4.6971 3.5182 5.2359 31 6 3.3800 2.6911 7.2646 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.0821 4.3535 1.0208 38 1 2.8240 3.6297 3.2147 39 1 0.2391 4.1384 4.0298 40 1 -0.7010 2.8606 4.8516 41 1 -1.4186 5.1764 5.5401 42 1 -0.8230 4.2067 6.8980 43 1 0.5747 6.4712 5.4547 44 1 0.1217 6.3698 7.1675 45 1 0.0474 5.8205 9.8558 46 1 5.1036 4.4193 5.6953 47 1 5.3656 2.6792 5.4291 48 1 4.6041 3.6689 4.1604 49 1 2.3839 2.3806 7.5799 50 1 4.0574 1.8384 7.3091 51 1 3.7419 3.4777 7.9267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087307163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:17 Heat of formation + Delta-G solvation = 76.234794 kcal Electronic energy + Delta-G solvation = -32703.015018 eV Core-core repulsion = 28607.474027 eV Total energy + Delta-G solvation = -4095.540991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.95205 -42.56979 -40.03457 -36.97728 -35.62652 -34.99438 -34.65891 -34.07561 -32.10935 -31.28440 -30.69260 -28.37480 -27.53846 -26.82670 -25.43693 -24.93923 -23.96209 -22.88670 -22.08922 -21.46229 -20.60291 -19.62857 -19.00069 -18.73184 -18.45994 -17.43548 -16.97344 -16.45231 -16.02824 -15.95607 -15.67839 -15.50736 -15.28749 -15.24872 -14.89709 -14.66969 -14.46149 -14.25141 -14.07509 -13.93633 -13.53243 -13.46859 -13.13811 -12.92098 -12.83332 -12.77432 -12.68868 -12.53095 -12.45843 -12.24663 -12.08033 -12.04325 -11.84917 -11.68490 -11.47913 -11.45468 -11.24722 -11.11240 -10.81197 -10.61878 -10.52445 -10.21290 -9.89816 -8.40551 -7.76020 -5.18599 0.02474 0.76778 1.47738 1.51344 1.56901 1.70331 2.14272 2.14509 2.56370 3.22414 3.28448 3.29469 3.42639 3.52695 3.57130 3.78807 3.94915 3.98551 4.16952 4.19434 4.28878 4.32869 4.38917 4.41898 4.53475 4.62081 4.67088 4.74294 4.77840 4.80862 4.85329 4.91489 4.99649 5.00572 5.08562 5.13078 5.13847 5.19799 5.20634 5.25808 5.33090 5.34396 5.42076 5.54864 5.61697 5.67929 5.72968 5.81250 5.91911 6.47330 6.51621 7.11425 7.15735 7.21422 7.93650 8.56783 9.29500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003006 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.722203 B = 9311.295909 C = 9529.438471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.061 3.939 4 O 0.087 5.913 5 N -0.375 5.375 6 C 0.034 3.966 7 C -0.279 4.279 8 C 0.604 3.396 9 O -0.560 6.560 10 N -0.683 5.683 11 C 0.159 3.841 12 H 0.094 0.906 13 C -0.162 4.162 14 H 0.074 0.926 15 C -0.075 4.075 16 C -0.113 4.113 17 C 0.158 3.842 18 N -0.583 5.583 19 C -0.228 4.228 20 H 0.065 0.935 21 C -0.046 4.046 22 N -0.922 5.922 23 Si 0.947 3.053 24 H -0.293 1.293 25 H -0.302 1.302 26 H -0.270 1.270 27 C 0.136 3.864 28 H 0.062 0.938 29 C -0.060 4.060 30 C -0.129 4.129 31 C -0.111 4.111 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.410 0.590 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.004 0.996 44 H 0.063 0.937 45 H 0.244 0.756 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.063 0.937 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 -9.000 -18.225 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.004 4.004 4 O 0.030 5.970 5 N -0.082 5.082 6 C -0.149 4.149 7 C -0.287 4.287 8 C 0.392 3.608 9 O -0.440 6.440 10 N -0.334 5.334 11 C 0.053 3.947 12 H 0.112 0.888 13 C -0.183 4.183 14 H 0.092 0.908 15 C -0.113 4.113 16 C -0.152 4.152 17 C 0.033 3.967 18 N -0.305 5.305 19 C -0.358 4.358 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.568 5.568 23 Si 0.777 3.223 24 H -0.221 1.221 25 H -0.230 1.230 26 H -0.194 1.194 27 C 0.029 3.971 28 H 0.080 0.920 29 C -0.061 4.061 30 C -0.186 4.186 31 C -0.168 4.168 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.248 0.752 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.022 0.978 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.076 -8.974 -18.904 21.319 hybrid contribution -0.059 1.143 2.168 2.451 sum 4.017 -7.832 -16.736 18.909 Atomic orbital electron populations 1.21695 0.92477 1.03958 1.01874 1.20514 0.97421 0.84328 1.06399 1.25329 0.93616 0.96638 0.84797 1.84571 1.61296 1.17690 1.33398 1.73655 1.17327 0.99039 1.18163 1.26822 0.99330 0.99557 0.89155 1.21999 1.15660 0.96409 0.94627 1.16875 0.76557 0.83913 0.83488 1.90768 1.47819 1.22775 1.82628 1.45312 1.66473 1.16926 1.04661 1.21245 0.95673 0.98544 0.79259 0.88829 1.23192 0.95714 1.00080 0.99358 0.90758 1.20938 0.96155 0.96803 0.97399 1.21670 0.98069 0.97595 0.97830 1.20680 0.85290 0.93615 0.97131 1.43811 1.17615 1.50236 1.18850 1.19127 0.90142 1.38883 0.87620 0.91726 1.25528 0.96863 1.02930 0.98803 1.70097 1.09828 1.49723 1.27187 0.85564 0.78630 0.78619 0.79438 1.22097 1.22960 1.19449 1.22053 0.95036 0.88189 0.91796 0.92047 1.21818 0.94379 0.94492 0.95400 1.21649 0.94644 1.01723 1.00576 1.21483 1.01050 1.00409 0.93883 0.89278 0.94074 0.91537 0.86371 0.87813 0.75705 0.75233 0.92153 0.93748 0.92683 0.94778 0.97805 0.91925 0.94712 0.92935 0.91578 0.91317 0.94096 0.91788 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.05 -0.72 6.05 29.85 0.18 -0.54 16 3 C 0.06 1.17 6.80 25.48 0.17 1.34 16 4 O 0.09 1.76 11.06 76.99 0.85 2.61 16 5 N -0.37 -8.00 12.01 -54.19 -0.65 -8.65 16 6 C 0.03 0.63 11.95 87.29 1.04 1.67 16 7 C -0.28 -5.96 6.47 -18.74 -0.12 -6.08 16 8 C 0.60 15.37 7.81 86.66 0.68 16.05 16 9 O -0.56 -17.32 14.84 -4.04 -0.06 -17.38 16 10 N -0.68 -16.45 4.18 -458.05 -1.92 -18.37 16 11 C 0.16 4.69 3.98 42.47 0.17 4.86 16 12 H 0.09 2.95 7.46 -2.39 -0.02 2.93 16 13 C -0.16 -5.79 2.96 -14.16 -0.04 -5.83 16 14 H 0.07 3.20 5.88 -2.38 -0.01 3.19 16 15 C -0.08 -2.64 5.94 30.38 0.18 -2.46 16 16 C -0.11 -4.58 5.89 30.80 0.18 -4.40 16 17 C 0.16 7.20 5.75 85.97 0.49 7.69 16 18 N -0.58 -26.59 2.85 -691.53 -1.97 -28.55 16 19 C -0.23 -11.46 7.75 84.03 0.65 -10.80 16 20 H 0.07 3.22 7.30 -2.91 -0.02 3.20 16 21 C -0.05 -2.41 5.05 84.86 0.43 -1.99 16 22 N -0.92 -51.85 11.21 21.65 0.24 -51.61 16 23 Si 0.95 43.56 29.59 68.60 2.03 45.59 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.14 4.90 2.97 42.87 0.13 5.03 16 28 H 0.06 2.02 6.51 -2.39 -0.02 2.01 16 29 C -0.06 -1.85 1.39 -55.18 -0.08 -1.92 16 30 C -0.13 -3.21 9.22 71.98 0.66 -2.54 16 31 C -0.11 -3.86 8.41 71.98 0.61 -3.26 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.84 6.78 -2.39 -0.02 1.83 16 37 H 0.23 2.66 7.88 -2.92 -0.02 2.64 16 38 H 0.41 8.21 5.72 -92.70 -0.53 7.68 16 39 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.06 3.32 5.68 -2.39 -0.01 3.30 16 45 H 0.24 13.60 8.31 -92.71 -0.77 12.83 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.40 6.46 -2.39 -0.02 1.39 16 49 H 0.04 1.61 5.92 -2.39 -0.01 1.60 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.06 2.32 6.14 -2.39 -0.01 2.30 16 Total: -1.00 -63.13 392.91 5.00 -58.13 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.42 Total: 22.76 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 6.05 Total: -4.53 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.29 Total: -107.18 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.79 Total: -14.77 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.13 5.00 -58.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087307163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.369 kcal (2) G-P(sol) polarization free energy of solvation -63.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds