Wall clock time and date at job start Wed Apr 1 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46899 * 2 1 4 4 C 1.35313 * 126.66511 * 89.99720 * 3 2 1 5 5 C 1.42269 * 103.92033 * 180.02562 * 4 3 2 6 6 C 1.48331 * 126.93710 * 180.02562 * 5 4 3 7 7 O 1.21495 * 120.00166 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99979 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99974 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.92895 * 23.67283 * 9 8 6 11 11 C 1.54151 * 113.63652 * 252.34853 * 9 8 6 12 12 H 1.09000 * 114.25045 * 104.29512 * 11 9 8 13 13 C 1.53064 * 111.68866 * 333.51131 * 11 9 8 14 14 C 1.53021 * 109.40997 * 213.59947 * 13 11 9 15 15 C 1.52946 * 108.93193 * 64.64559 * 14 13 11 16 16 N 1.44111 * 109.36720 * 302.76372 * 15 14 13 17 17 C 1.36930 * 117.16220 * 218.92940 * 16 15 14 18 18 H 1.08005 * 119.99946 * 151.88455 * 17 16 15 19 19 C 1.38815 * 120.00253 * 331.88351 * 17 16 15 20 20 N 1.31616 * 119.99872 * 343.51928 * 19 17 16 21 21 Si 1.86801 * 119.99893 * 163.51949 * 19 17 16 22 22 H 1.48497 * 109.47182 * 89.99878 * 21 19 17 23 23 H 1.48501 * 109.46770 * 210.00058 * 21 19 17 24 24 H 1.48506 * 109.47158 * 329.99859 * 21 19 17 25 25 C 1.45094 * 124.34151 * 39.77774 * 16 15 14 26 26 H 1.08999 * 112.24757 * 203.32661 * 25 16 15 27 27 C 1.53383 * 114.62964 * 72.88737 * 25 16 15 28 28 C 1.52994 * 113.69140 * 103.21052 * 27 25 16 29 29 C 1.53007 * 113.68410 * 332.07397 * 27 25 16 30 30 N 1.30984 * 106.12548 * 0.26189 * 5 4 3 31 31 O 1.20905 * 111.43471 * 359.54226 * 30 5 4 32 32 H 1.08995 * 109.47142 * 299.99310 * 1 2 3 33 33 H 1.08993 * 109.47287 * 60.00130 * 1 2 3 34 34 H 1.09008 * 109.46593 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.46545 * 240.00367 * 2 1 3 36 36 H 1.08993 * 109.47287 * 119.99870 * 2 1 3 37 37 H 1.08001 * 128.03713 * 0.02562 * 4 3 2 38 38 H 0.96999 * 119.99861 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.48072 * 333.57469 * 13 11 9 40 40 H 1.08993 * 109.47977 * 93.60706 * 13 11 9 41 41 H 1.08994 * 109.56286 * 184.48283 * 14 13 11 42 42 H 1.08998 * 109.56101 * 304.70170 * 14 13 11 43 43 H 1.08999 * 109.39778 * 62.78392 * 15 14 13 44 44 H 1.09001 * 109.39918 * 182.61039 * 15 14 13 45 45 H 0.97000 * 119.99765 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47375 * 176.53381 * 28 27 25 47 47 H 1.09001 * 109.47372 * 296.53299 * 28 27 25 48 48 H 1.09006 * 109.47038 * 56.53316 * 28 27 25 49 49 H 1.08993 * 109.47001 * 335.07252 * 29 27 25 50 50 H 1.09000 * 109.46590 * 95.07631 * 29 27 25 51 51 H 1.09001 * 109.46820 * 215.07041 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3016 2.1827 1.0854 5 6 2.7384 3.4199 0.5353 6 6 3.1653 4.6271 1.2841 7 8 3.1643 4.6203 2.4990 8 7 3.5545 5.7314 0.6167 9 6 3.9768 6.9235 1.3563 10 1 4.3257 6.6968 2.3637 11 6 2.9576 8.0787 1.3005 12 1 2.3812 8.2117 2.2160 13 6 2.0971 8.0133 0.0363 14 6 1.7579 9.4333 -0.4220 15 6 3.0489 10.1448 -0.8298 16 7 3.9684 10.1396 0.2798 17 6 4.7128 11.2713 0.4801 18 1 5.0524 11.5257 1.4733 19 6 5.0311 12.0918 -0.5935 20 7 4.9115 11.6411 -1.8243 21 14 5.6292 13.8355 -0.2913 22 1 7.1093 13.8373 -0.1711 23 1 5.2237 14.7016 -1.4273 24 1 5.0299 14.3536 0.9648 25 6 4.1636 9.0153 1.1759 26 1 4.5623 9.3225 2.1428 27 6 4.9297 7.8357 0.5640 28 6 6.3873 7.7462 1.0204 29 6 4.7709 7.7205 -0.9534 30 7 2.6824 3.2796 -0.7657 31 8 2.2985 2.1756 -1.0749 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0278 0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 2.2069 1.9139 2.1271 38 1 3.5550 5.7369 -0.3533 39 1 2.6471 7.4987 -0.7516 40 1 1.1764 7.4708 0.2510 41 1 1.0804 9.3896 -1.2746 42 1 1.2823 9.9765 0.3946 43 1 3.4963 9.6254 -1.6773 44 1 2.8219 11.1723 -1.1137 45 1 5.1336 12.2145 -2.5745 46 1 6.8470 6.8540 0.5954 47 1 6.9287 8.6299 0.6825 48 1 6.4246 7.6911 2.1084 49 1 3.8361 8.1911 -1.2576 50 1 5.6059 8.2198 -1.4449 51 1 4.7578 6.6685 -1.2385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087313971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:24 Heat of formation + Delta-G solvation = 65.362914 kcal Electronic energy + Delta-G solvation = -32174.751383 eV Core-core repulsion = 28078.738952 eV Total energy + Delta-G solvation = -4096.012431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.17505 -42.49736 -40.24148 -37.07030 -35.84072 -35.15397 -34.52074 -34.28976 -32.16959 -31.52679 -31.10126 -28.41962 -27.31199 -27.06064 -25.39558 -24.90386 -24.04964 -23.51135 -22.40968 -21.22652 -20.74833 -19.27263 -18.89360 -18.76137 -18.39032 -17.97658 -17.16249 -16.61947 -16.45786 -16.13781 -15.90766 -15.40772 -15.38458 -15.16454 -14.94300 -14.81697 -14.36469 -14.30323 -14.05495 -13.86419 -13.56255 -13.48282 -13.15337 -12.99119 -12.89903 -12.87733 -12.78550 -12.56192 -12.47978 -12.39045 -12.12049 -12.03152 -11.83698 -11.67495 -11.62708 -11.56959 -11.26893 -11.25478 -11.02613 -10.75267 -10.46587 -10.33362 -9.99150 -8.54649 -7.79649 -5.28640 0.01538 0.65048 1.45482 1.48290 1.56372 1.79153 1.99324 2.04986 2.53462 2.85085 3.30817 3.44539 3.48836 3.60216 3.76273 3.87554 3.91020 3.98025 4.09701 4.18771 4.21828 4.36188 4.37336 4.43248 4.46536 4.54622 4.60863 4.64865 4.73411 4.74797 4.80795 4.89319 4.98625 4.99181 5.06282 5.07772 5.08824 5.11439 5.16126 5.20817 5.24266 5.33888 5.42380 5.45025 5.53909 5.55240 5.63924 5.73677 5.96430 6.28166 6.45437 6.86143 7.02601 7.25940 8.04460 8.35453 9.20767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.002548 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.609557 B =10988.444226 C =11244.165024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.014 4.014 4 C -0.193 4.193 5 C -0.046 4.046 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.687 5.687 9 C 0.140 3.860 10 H 0.113 0.887 11 C -0.125 4.125 12 H 0.079 0.921 13 C -0.095 4.095 14 C -0.136 4.136 15 C 0.192 3.808 16 N -0.576 5.576 17 C -0.271 4.271 18 H 0.060 0.940 19 C -0.039 4.039 20 N -0.924 5.924 21 Si 0.956 3.044 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.174 3.826 26 H 0.074 0.926 27 C -0.107 4.107 28 C -0.121 4.121 29 C -0.130 4.130 30 N -0.350 5.350 31 O 0.126 5.874 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.193 0.807 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.030 0.970 45 H 0.247 0.753 46 H 0.053 0.947 47 H 0.040 0.960 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.033 0.967 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 -24.505 2.761 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.077 4.077 4 C -0.215 4.215 5 C -0.204 4.204 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.338 5.338 9 C 0.035 3.965 10 H 0.131 0.869 11 C -0.146 4.146 12 H 0.097 0.903 13 C -0.133 4.133 14 C -0.175 4.175 15 C 0.067 3.933 16 N -0.294 5.294 17 C -0.402 4.402 18 H 0.078 0.922 19 C -0.235 4.235 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.065 3.935 26 H 0.092 0.908 27 C -0.111 4.111 28 C -0.179 4.179 29 C -0.187 4.187 30 N -0.049 5.049 31 O 0.049 5.951 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.210 0.790 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.655 -23.514 2.476 24.852 hybrid contribution 0.632 1.311 0.174 1.466 sum -7.024 -22.203 2.650 23.437 Atomic orbital electron populations 1.21830 0.92931 1.03966 1.02302 1.20438 0.96857 0.83464 1.07000 1.25236 1.00176 0.98193 0.84080 1.22658 1.05345 0.90833 1.02713 1.23507 1.07925 0.98363 0.90619 1.17175 0.76919 0.81569 0.86245 1.90754 1.55449 1.83437 1.13587 1.45919 1.64679 1.12194 1.11003 1.22677 0.95687 0.81680 0.96433 0.86935 1.23222 0.96600 0.95784 0.99001 0.90258 1.21405 0.98669 0.96768 0.96424 1.21974 0.98578 0.96344 1.00568 1.20072 0.87070 0.97415 0.88783 1.42936 1.42650 1.11575 1.32232 1.19482 1.28094 1.00161 0.92433 0.92222 1.25638 1.00243 1.02277 0.95333 1.70204 1.53262 1.35622 0.97827 0.85459 0.77792 0.81338 0.76892 1.21508 1.22074 1.20013 1.21278 0.93585 0.85433 0.93232 0.90783 1.22882 0.95125 0.97263 0.95839 1.21566 0.94939 1.00607 1.00771 1.21901 1.03595 0.99383 0.93774 1.74202 1.14839 1.00336 1.15571 1.84750 1.59429 1.16665 1.34254 0.92632 0.92801 0.89099 0.87253 0.86055 0.78960 0.75161 0.90778 0.92098 0.91277 0.93058 0.96244 0.95166 0.94331 0.92783 0.94134 0.91921 0.89526 0.94739 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 71.98 0.71 -0.12 16 2 C -0.04 -0.22 6.50 29.85 0.19 -0.02 16 3 C -0.01 -0.20 6.73 25.01 0.17 -0.03 16 4 C -0.19 -3.71 10.92 22.60 0.25 -3.46 16 5 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 6 C 0.60 18.25 7.85 86.93 0.68 18.93 16 7 O -0.55 -19.53 16.55 -3.70 -0.06 -19.59 16 8 N -0.69 -20.53 4.34 -441.71 -1.92 -22.44 16 9 C 0.14 4.52 3.63 45.67 0.17 4.68 16 10 H 0.11 3.68 7.34 -2.39 -0.02 3.66 16 11 C -0.13 -4.31 4.29 -10.31 -0.04 -4.35 16 12 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.10 -3.17 4.66 30.62 0.14 -3.03 16 14 C -0.14 -5.07 6.03 30.58 0.18 -4.89 16 15 C 0.19 8.99 3.93 86.81 0.34 9.33 16 16 N -0.58 -27.53 2.61 -686.16 -1.79 -29.32 16 17 C -0.27 -14.53 9.40 84.04 0.79 -13.74 16 18 H 0.06 3.18 7.87 -2.91 -0.02 3.16 16 19 C -0.04 -2.11 4.77 84.86 0.41 -1.70 16 20 N -0.92 -52.84 11.08 21.65 0.24 -52.60 16 21 Si 0.96 44.79 29.58 68.60 2.03 46.82 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.17 7.00 3.57 45.45 0.16 7.17 16 26 H 0.07 3.01 7.97 -2.39 -0.02 2.99 16 27 C -0.11 -3.83 1.35 -51.76 -0.07 -3.90 16 28 C -0.12 -4.16 9.11 71.98 0.66 -3.50 16 29 C -0.13 -4.87 7.02 71.98 0.51 -4.36 16 30 N -0.35 -8.79 11.84 -49.53 -0.59 -9.37 16 31 O 0.13 2.52 11.18 71.93 0.80 3.33 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 38 H 0.41 11.87 5.34 -92.71 -0.50 11.37 16 39 H 0.07 2.46 3.70 -2.39 -0.01 2.45 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.02 1.00 5.52 -2.39 -0.01 0.98 16 44 H 0.03 1.61 6.58 -2.39 -0.02 1.59 16 45 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.92 8.02 -2.38 -0.02 1.91 16 49 H 0.09 3.44 1.93 -2.39 0.00 3.44 16 50 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 51 H 0.05 1.66 6.33 -2.39 -0.02 1.64 16 Total: -1.00 -65.49 389.89 4.73 -60.75 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.46 Total: 26.35 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.55 Total: -3.90 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.05 Total: -113.74 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.74 Total: -16.27 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.49 4.73 -60.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.117 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds