Wall clock time and date at job start Wed Apr 1 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46843 * 2 1 4 4 C 1.35321 * 126.67085 * 89.99827 * 3 2 1 5 5 C 1.42271 * 103.92421 * 180.02562 * 4 3 2 6 6 C 1.48326 * 126.93890 * 180.02562 * 5 4 3 7 7 O 1.21498 * 120.00073 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00275 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99990 * 180.02562 * 8 6 5 10 10 H 1.08996 * 113.22792 * 22.18796 * 9 8 6 11 11 C 1.50009 * 114.12329 * 249.14084 * 9 8 6 12 12 H 1.09005 * 112.50059 * 322.39261 * 11 9 8 13 13 C 1.51199 * 126.17757 * 104.78603 * 11 9 8 14 14 C 1.54090 * 106.19402 * 161.43396 * 13 11 9 15 15 C 1.52500 * 112.67126 * 304.56687 * 14 13 11 16 16 N 1.47782 * 111.33605 * 47.08486 * 15 14 13 17 17 C 1.36939 * 122.79014 * 127.54901 * 16 15 14 18 18 H 1.07995 * 119.99813 * 206.43214 * 17 16 15 19 19 C 1.38815 * 120.00178 * 26.44043 * 17 16 15 20 20 N 1.31619 * 119.99896 * 14.25202 * 19 17 16 21 21 Si 1.86794 * 120.00125 * 194.25136 * 19 17 16 22 22 H 1.48504 * 109.47216 * 89.99724 * 21 19 17 23 23 H 1.48501 * 109.47261 * 210.00086 * 21 19 17 24 24 H 1.48501 * 109.46948 * 330.00035 * 21 19 17 25 25 C 1.45383 * 114.03838 * 307.12389 * 16 15 14 26 26 H 1.08998 * 112.09596 * 301.58339 * 25 16 15 27 27 C 1.49976 * 126.65937 * 156.37868 * 25 16 15 28 28 C 1.52998 * 114.08431 * 107.57076 * 27 25 16 29 29 C 1.52999 * 114.24359 * 335.15653 * 27 25 16 30 30 N 1.30985 * 106.12391 * 359.97438 * 5 4 3 31 31 O 1.20905 * 111.43974 * 0.02562 * 30 5 4 32 32 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47341 * 299.99868 * 1 2 3 34 34 H 1.08996 * 109.47425 * 60.00316 * 1 2 3 35 35 H 1.08995 * 109.47476 * 239.99833 * 2 1 3 36 36 H 1.08999 * 109.46840 * 119.99231 * 2 1 3 37 37 H 1.08000 * 128.03345 * 0.04031 * 4 3 2 38 38 H 0.97004 * 119.99746 * 359.97438 * 8 6 5 39 39 H 1.08995 * 110.10341 * 280.60581 * 13 11 9 40 40 H 1.08999 * 110.09584 * 42.15215 * 13 11 9 41 41 H 1.08998 * 108.84391 * 65.38735 * 14 13 11 42 42 H 1.09003 * 108.84402 * 183.74296 * 14 13 11 43 43 H 1.09003 * 109.00062 * 167.40118 * 15 14 13 44 44 H 1.08997 * 109.00067 * 286.24827 * 15 14 13 45 45 H 0.96998 * 120.00096 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.47020 * 173.91794 * 28 27 25 47 47 H 1.09004 * 109.46700 * 293.91970 * 28 27 25 48 48 H 1.08999 * 109.47305 * 53.91612 * 28 27 25 49 49 H 1.09006 * 109.47127 * 332.43837 * 29 27 25 50 50 H 1.09001 * 109.47083 * 92.43590 * 29 27 25 51 51 H 1.08996 * 109.46817 * 212.43643 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3016 2.1828 1.0854 5 6 2.7383 3.4200 0.5353 6 6 3.1653 4.6272 1.2840 7 8 3.1643 4.6205 2.4989 8 7 3.5544 5.7315 0.6165 9 6 3.9767 6.9236 1.3560 10 1 4.3024 6.7056 2.3731 11 6 3.0285 8.0809 1.2465 12 1 2.5893 8.1677 0.2527 13 6 2.0706 8.5542 2.3163 14 6 1.6817 9.9963 1.9375 15 6 2.8935 10.9065 1.7679 16 7 3.9348 10.2664 0.9373 17 6 4.4868 10.8743 -0.1586 18 1 4.8937 10.2759 -0.9603 19 6 4.5235 12.2596 -0.2391 20 7 4.2940 12.9873 0.8333 21 14 4.8986 13.0909 -1.8692 22 1 3.6317 13.3297 -2.6062 23 1 5.5776 14.3876 -1.6189 24 1 5.7847 12.2162 -2.6785 25 6 4.3250 8.9422 1.3933 26 1 4.7006 8.9552 2.4165 27 6 4.9419 7.8554 0.5642 28 6 6.4239 7.6121 0.8564 29 6 4.6303 7.9519 -0.9306 30 7 2.6882 3.2775 -0.7658 31 8 2.2988 2.1754 -1.0750 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 2.2071 1.9140 2.1271 38 1 3.5556 5.7368 -0.3535 39 1 1.1847 7.9195 2.3333 40 1 2.5599 8.5398 3.2902 41 1 1.1230 9.9760 1.0018 42 1 1.0410 10.4050 2.7189 43 1 2.5769 11.8333 1.2893 44 1 3.3043 11.1373 2.7508 45 1 4.3193 13.9554 0.7771 46 1 6.7668 6.7426 0.2957 47 1 7.0013 8.4874 0.5586 48 1 6.5594 7.4332 1.9230 49 1 3.6743 8.4565 -1.0706 50 1 5.4165 8.5182 -1.4298 51 1 4.5780 6.9498 -1.3562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087313973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:31 Heat of formation + Delta-G solvation = 84.610860 kcal Electronic energy + Delta-G solvation = -31779.940712 eV Core-core repulsion = 27684.762934 eV Total energy + Delta-G solvation = -4095.177778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.30635 -41.04366 -38.96797 -35.43982 -35.26967 -34.13729 -33.19403 -32.95174 -30.50947 -30.16635 -29.39597 -27.29366 -26.09806 -25.45299 -24.54964 -23.83052 -22.72541 -22.06291 -20.57918 -20.05077 -19.29406 -18.48570 -18.02530 -17.62121 -16.95939 -16.57172 -15.76348 -15.04140 -14.94901 -14.87672 -14.57424 -14.13693 -14.04906 -13.94368 -13.77570 -13.49496 -13.15998 -13.07525 -12.73925 -12.64156 -12.48793 -12.28148 -11.93048 -11.90045 -11.77967 -11.44432 -11.35479 -11.18236 -11.04105 -10.86681 -10.78927 -10.64392 -10.46715 -10.38425 -10.16381 -10.07671 -9.97862 -9.87806 -9.74317 -9.38165 -8.89185 -8.69116 -8.40350 -6.58329 -5.75198 -3.18946 0.92884 1.44430 2.64321 2.99620 3.12701 3.37024 3.43863 3.44878 3.81030 4.19134 4.49228 4.53579 4.66480 4.67877 4.75214 4.85659 4.94410 5.05746 5.14277 5.21430 5.25320 5.32638 5.43157 5.48222 5.58915 5.60865 5.70886 5.77807 5.85063 5.89001 5.99689 6.00793 6.08494 6.16991 6.27998 6.36686 6.39002 6.46332 6.56711 6.61145 6.66453 6.72505 6.76678 6.85861 7.03278 7.12408 7.41832 7.49353 7.70128 7.81534 7.82915 8.12356 8.43113 9.19689 9.85055 10.49533 11.32278 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002576 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.616911 B =10869.007425 C =11268.089096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.035 4.035 4 C -0.181 4.181 5 C -0.021 4.021 6 C 0.595 3.405 7 O -0.527 6.527 8 N -0.694 5.694 9 C 0.139 3.861 10 H 0.117 0.883 11 C -0.170 4.170 12 H 0.094 0.906 13 C -0.088 4.088 14 C -0.136 4.136 15 C 0.167 3.833 16 N -0.568 5.568 17 C -0.243 4.243 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.906 5.906 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.153 3.847 26 H 0.052 0.948 27 C -0.064 4.064 28 C -0.133 4.133 29 C -0.122 4.122 30 N -0.332 5.332 31 O 0.121 5.879 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.180 0.820 38 H 0.405 0.595 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -24.081 -1.176 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.204 4.204 5 C -0.180 4.180 6 C 0.378 3.622 7 O -0.402 6.402 8 N -0.344 5.344 9 C 0.035 3.965 10 H 0.135 0.865 11 C -0.191 4.191 12 H 0.112 0.888 13 C -0.126 4.126 14 C -0.175 4.175 15 C 0.042 3.958 16 N -0.289 5.289 17 C -0.372 4.372 18 H 0.094 0.906 19 C -0.199 4.199 20 N -0.551 5.551 21 Si 0.730 3.270 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.044 3.956 26 H 0.070 0.930 27 C -0.066 4.066 28 C -0.190 4.190 29 C -0.179 4.179 30 N -0.033 5.033 31 O 0.046 5.954 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.197 0.803 38 H 0.241 0.759 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.830 -22.943 -1.314 23.482 hybrid contribution 0.042 0.319 -0.441 0.546 sum -4.788 -22.623 -1.754 23.191 Atomic orbital electron populations 1.21818 0.93317 1.02859 1.03078 1.20148 0.96764 0.86061 1.04978 1.24531 1.02512 0.97212 0.85528 1.22436 1.04827 0.91633 1.01490 1.23656 1.06104 0.98170 0.90094 1.16919 0.77740 0.81087 0.86460 1.90788 1.54127 1.82786 1.12451 1.46000 1.64900 1.12689 1.10827 1.22612 0.96558 0.80889 0.96481 0.86532 1.23417 0.98708 0.96509 1.00497 0.88812 1.21113 0.97775 0.96133 0.97587 1.22117 1.00178 0.95438 0.99762 1.20753 0.85931 0.95058 0.94022 1.43770 1.40238 1.14460 1.30436 1.19316 1.34022 0.88981 0.94909 0.90597 1.25096 1.00954 0.97085 0.96770 1.69984 1.53945 1.04737 1.26389 0.86323 0.77910 0.79030 0.83717 1.21580 1.21856 1.20488 1.21377 0.92531 0.86613 0.95050 0.93032 1.21856 0.93802 0.94867 0.96041 1.21710 0.95164 1.01296 1.00864 1.21668 1.03730 0.99650 0.92855 1.74189 1.14123 0.99289 1.15703 1.84776 1.59956 1.17226 1.33470 0.91120 0.91920 0.91927 0.89097 0.88263 0.80290 0.75854 0.94078 0.92746 0.93314 0.93358 0.89052 0.96665 0.93728 0.93416 0.91678 0.92888 0.90532 0.91434 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.16 0.37 -0.26 16 2 C -0.04 -0.18 6.50 -27.88 -0.18 -0.36 16 3 C -0.03 -0.29 6.73 -35.35 -0.24 -0.53 16 4 C -0.18 -1.88 10.92 -39.07 -0.43 -2.31 16 5 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 6 C 0.59 9.25 7.85 -12.11 -0.10 9.15 16 7 O -0.53 -9.49 16.55 5.37 0.09 -9.40 16 8 N -0.69 -10.38 5.32 -58.45 -0.31 -10.69 16 9 C 0.14 2.27 3.54 -71.82 -0.25 2.01 16 10 H 0.12 2.01 7.42 -51.93 -0.39 1.62 16 11 C -0.17 -3.07 2.82 -95.81 -0.27 -3.34 16 12 H 0.09 1.80 6.08 -51.93 -0.32 1.48 16 13 C -0.09 -1.60 6.12 -27.07 -0.17 -1.77 16 14 C -0.14 -2.65 5.89 -26.42 -0.16 -2.81 16 15 C 0.17 3.95 5.31 -3.59 -0.02 3.93 16 16 N -0.57 -13.57 2.83 -169.92 -0.48 -14.05 16 17 C -0.24 -6.30 9.07 -15.06 -0.14 -6.44 16 18 H 0.08 1.90 5.17 -52.49 -0.27 1.62 16 19 C 0.00 -0.02 5.08 -17.43 -0.09 -0.11 16 20 N -0.91 -25.89 11.06 55.49 0.61 -25.27 16 21 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 3.10 3.05 -72.12 -0.22 2.88 16 26 H 0.05 1.10 8.01 -51.93 -0.42 0.68 16 27 C -0.06 -1.09 1.37 -159.13 -0.22 -1.31 16 28 C -0.13 -2.08 9.21 37.16 0.34 -1.74 16 29 C -0.12 -2.02 6.90 37.16 0.26 -1.76 16 30 N -0.33 -4.23 11.84 33.29 0.39 -3.84 16 31 O 0.12 1.28 11.18 17.23 0.19 1.47 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.41 5.64 6.54 -40.82 -0.27 5.38 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 49 H 0.08 1.41 5.74 -51.93 -0.30 1.11 16 50 H 0.07 1.17 7.02 -51.93 -0.36 0.80 16 51 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -30.52 397.85 -8.65 -39.17 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.02 Total: 5.83 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.10 Total: -5.63 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.22 Total: -53.85 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.28 Total: -7.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.52 -8.65 -39.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.784 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds