Wall clock time and date at job start Wed Apr 1 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46843 * 2 1 4 4 C 1.35321 * 126.67085 * 89.99827 * 3 2 1 5 5 C 1.42271 * 103.92421 * 180.02562 * 4 3 2 6 6 C 1.48326 * 126.93890 * 180.02562 * 5 4 3 7 7 O 1.21498 * 120.00073 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00275 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99990 * 180.02562 * 8 6 5 10 10 H 1.08996 * 113.22792 * 22.18796 * 9 8 6 11 11 C 1.50009 * 114.12329 * 249.14084 * 9 8 6 12 12 H 1.09005 * 112.50059 * 322.39261 * 11 9 8 13 13 C 1.51199 * 126.17757 * 104.78603 * 11 9 8 14 14 C 1.54090 * 106.19402 * 161.43396 * 13 11 9 15 15 C 1.52500 * 112.67126 * 304.56687 * 14 13 11 16 16 N 1.47782 * 111.33605 * 47.08486 * 15 14 13 17 17 C 1.36939 * 122.79014 * 127.54901 * 16 15 14 18 18 H 1.07995 * 119.99813 * 206.43214 * 17 16 15 19 19 C 1.38815 * 120.00178 * 26.44043 * 17 16 15 20 20 N 1.31619 * 119.99896 * 14.25202 * 19 17 16 21 21 Si 1.86794 * 120.00125 * 194.25136 * 19 17 16 22 22 H 1.48504 * 109.47216 * 89.99724 * 21 19 17 23 23 H 1.48501 * 109.47261 * 210.00086 * 21 19 17 24 24 H 1.48501 * 109.46948 * 330.00035 * 21 19 17 25 25 C 1.45383 * 114.03838 * 307.12389 * 16 15 14 26 26 H 1.08998 * 112.09596 * 301.58339 * 25 16 15 27 27 C 1.49976 * 126.65937 * 156.37868 * 25 16 15 28 28 C 1.52998 * 114.08431 * 107.57076 * 27 25 16 29 29 C 1.52999 * 114.24359 * 335.15653 * 27 25 16 30 30 N 1.30985 * 106.12391 * 359.97438 * 5 4 3 31 31 O 1.20905 * 111.43974 * 0.02562 * 30 5 4 32 32 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47341 * 299.99868 * 1 2 3 34 34 H 1.08996 * 109.47425 * 60.00316 * 1 2 3 35 35 H 1.08995 * 109.47476 * 239.99833 * 2 1 3 36 36 H 1.08999 * 109.46840 * 119.99231 * 2 1 3 37 37 H 1.08000 * 128.03345 * 0.04031 * 4 3 2 38 38 H 0.97004 * 119.99746 * 359.97438 * 8 6 5 39 39 H 1.08995 * 110.10341 * 280.60581 * 13 11 9 40 40 H 1.08999 * 110.09584 * 42.15215 * 13 11 9 41 41 H 1.08998 * 108.84391 * 65.38735 * 14 13 11 42 42 H 1.09003 * 108.84402 * 183.74296 * 14 13 11 43 43 H 1.09003 * 109.00062 * 167.40118 * 15 14 13 44 44 H 1.08997 * 109.00067 * 286.24827 * 15 14 13 45 45 H 0.96998 * 120.00096 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.47020 * 173.91794 * 28 27 25 47 47 H 1.09004 * 109.46700 * 293.91970 * 28 27 25 48 48 H 1.08999 * 109.47305 * 53.91612 * 28 27 25 49 49 H 1.09006 * 109.47127 * 332.43837 * 29 27 25 50 50 H 1.09001 * 109.47083 * 92.43590 * 29 27 25 51 51 H 1.08996 * 109.46817 * 212.43643 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3016 2.1828 1.0854 5 6 2.7383 3.4200 0.5353 6 6 3.1653 4.6272 1.2840 7 8 3.1643 4.6205 2.4989 8 7 3.5544 5.7315 0.6165 9 6 3.9767 6.9236 1.3560 10 1 4.3024 6.7056 2.3731 11 6 3.0285 8.0809 1.2465 12 1 2.5893 8.1677 0.2527 13 6 2.0706 8.5542 2.3163 14 6 1.6817 9.9963 1.9375 15 6 2.8935 10.9065 1.7679 16 7 3.9348 10.2664 0.9373 17 6 4.4868 10.8743 -0.1586 18 1 4.8937 10.2759 -0.9603 19 6 4.5235 12.2596 -0.2391 20 7 4.2940 12.9873 0.8333 21 14 4.8986 13.0909 -1.8692 22 1 3.6317 13.3297 -2.6062 23 1 5.5776 14.3876 -1.6189 24 1 5.7847 12.2162 -2.6785 25 6 4.3250 8.9422 1.3933 26 1 4.7006 8.9552 2.4165 27 6 4.9419 7.8554 0.5642 28 6 6.4239 7.6121 0.8564 29 6 4.6303 7.9519 -0.9306 30 7 2.6882 3.2775 -0.7658 31 8 2.2988 2.1754 -1.0750 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 2.2071 1.9140 2.1271 38 1 3.5556 5.7368 -0.3535 39 1 1.1847 7.9195 2.3333 40 1 2.5599 8.5398 3.2902 41 1 1.1230 9.9760 1.0018 42 1 1.0410 10.4050 2.7189 43 1 2.5769 11.8333 1.2893 44 1 3.3043 11.1373 2.7508 45 1 4.3193 13.9554 0.7771 46 1 6.7668 6.7426 0.2957 47 1 7.0013 8.4874 0.5586 48 1 6.5594 7.4332 1.9230 49 1 3.6743 8.4565 -1.0706 50 1 5.4165 8.5182 -1.4298 51 1 4.5780 6.9498 -1.3562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087313973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:30 Heat of formation + Delta-G solvation = 67.237119 kcal Electronic energy + Delta-G solvation = -31780.694094 eV Core-core repulsion = 27684.762934 eV Total energy + Delta-G solvation = -4095.931160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.16757 -42.51385 -40.26477 -37.07228 -35.84089 -35.16555 -34.79179 -34.33205 -32.08749 -31.11871 -30.89091 -28.68553 -27.60391 -27.00915 -25.40728 -24.90725 -23.89580 -23.35365 -22.11404 -21.27293 -20.86320 -19.88139 -18.90691 -18.54188 -18.47972 -17.86904 -17.22616 -16.56532 -16.16746 -15.82866 -15.65927 -15.62031 -15.38211 -15.09459 -14.98130 -14.74307 -14.40148 -14.35711 -14.21902 -14.09499 -13.48571 -13.46330 -13.16377 -12.95877 -12.88415 -12.81281 -12.79722 -12.53172 -12.41227 -12.38942 -12.10225 -11.96465 -11.83553 -11.78917 -11.69768 -11.65299 -11.56715 -11.38490 -11.08177 -10.62695 -10.46214 -10.30676 -10.03658 -8.54298 -7.78922 -5.24993 0.01487 0.65093 1.46443 1.47927 1.55436 1.77431 1.99499 2.04213 2.53444 2.84760 3.19996 3.35925 3.38250 3.48414 3.64353 3.79806 3.91251 4.04185 4.11738 4.18903 4.21945 4.31308 4.37322 4.44385 4.46404 4.54457 4.59279 4.61960 4.71632 4.74619 4.76059 4.92451 4.98747 4.99899 5.04801 5.07945 5.08800 5.09942 5.16089 5.18407 5.22877 5.29052 5.36901 5.42239 5.49191 5.54186 5.67590 5.74370 5.79737 6.28575 6.42365 6.87403 7.02207 7.16554 7.88563 8.51497 9.26488 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002576 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.616911 B =10869.007425 C =11268.089096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.013 4.013 4 C -0.194 4.194 5 C -0.045 4.045 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.688 5.688 9 C 0.156 3.844 10 H 0.112 0.888 11 C -0.155 4.155 12 H 0.087 0.913 13 C -0.085 4.085 14 C -0.124 4.124 15 C 0.173 3.827 16 N -0.581 5.581 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.059 4.059 20 N -0.942 5.942 21 Si 0.959 3.041 22 H -0.290 1.290 23 H -0.301 1.301 24 H -0.266 1.266 25 C 0.134 3.866 26 H 0.040 0.960 27 C -0.058 4.058 28 C -0.130 4.130 29 C -0.117 4.117 30 N -0.348 5.348 31 O 0.126 5.874 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.192 0.808 38 H 0.411 0.589 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.059 0.941 44 H -0.009 1.009 45 H 0.245 0.755 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -27.763 -2.332 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.217 4.217 5 C -0.203 4.203 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.338 5.338 9 C 0.051 3.949 10 H 0.130 0.870 11 C -0.177 4.177 12 H 0.105 0.895 13 C -0.122 4.122 14 C -0.163 4.163 15 C 0.048 3.952 16 N -0.303 5.303 17 C -0.367 4.367 18 H 0.104 0.896 19 C -0.254 4.254 20 N -0.589 5.589 21 Si 0.788 3.212 22 H -0.217 1.217 23 H -0.228 1.228 24 H -0.190 1.190 25 C 0.026 3.974 26 H 0.058 0.942 27 C -0.059 4.059 28 C -0.187 4.187 29 C -0.174 4.174 30 N -0.048 5.048 31 O 0.049 5.951 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.209 0.791 38 H 0.249 0.751 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.009 0.991 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.254 -26.656 -2.492 27.282 hybrid contribution 0.134 1.326 -0.067 1.334 sum -5.119 -25.330 -2.559 25.968 Atomic orbital electron populations 1.21831 0.93004 1.03953 1.02282 1.20434 0.96800 0.83499 1.07026 1.25219 1.00196 0.98128 0.84062 1.22663 1.05434 0.90881 1.02709 1.23484 1.07895 0.98270 0.90641 1.17169 0.76904 0.81570 0.86233 1.90768 1.55321 1.83416 1.13719 1.45850 1.64806 1.12179 1.11000 1.22231 0.95292 0.81048 0.96302 0.87016 1.23307 0.97599 0.96626 1.00120 0.89496 1.21074 0.98465 0.95175 0.97522 1.21937 0.98265 0.95736 1.00387 1.20572 0.87341 0.95011 0.92266 1.43951 1.40635 1.15521 1.30192 1.19706 1.32225 0.89159 0.95590 0.89616 1.25805 1.02183 0.97937 0.99449 1.70152 1.56259 1.04299 1.28203 0.85376 0.77588 0.77719 0.80505 1.21699 1.22840 1.19006 1.21593 0.95085 0.85498 0.95242 0.94206 1.21851 0.94876 0.93151 0.96067 1.21676 0.93798 1.01621 1.01584 1.21588 1.02280 1.01090 0.92430 1.74182 1.14770 1.00368 1.15446 1.84748 1.59304 1.16840 1.34208 0.89120 0.92703 0.92780 0.87172 0.86082 0.79081 0.75087 0.92402 0.92711 0.93475 0.91568 0.92305 0.99092 0.94557 0.91126 0.93069 0.92437 0.92429 0.92187 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 71.98 0.71 -0.07 16 2 C -0.04 -0.20 6.50 29.85 0.19 0.00 16 3 C -0.01 -0.18 6.73 25.01 0.17 -0.01 16 4 C -0.19 -3.62 10.92 22.60 0.25 -3.38 16 5 C -0.05 -1.13 7.19 42.96 0.31 -0.82 16 6 C 0.60 17.80 7.85 86.93 0.68 18.48 16 7 O -0.56 -19.49 16.55 -3.71 -0.06 -19.56 16 8 N -0.69 -19.52 5.32 -457.12 -2.43 -21.95 16 9 C 0.16 4.94 3.54 42.47 0.15 5.09 16 10 H 0.11 3.75 7.42 -2.39 -0.02 3.73 16 11 C -0.16 -5.51 2.82 -14.16 -0.04 -5.55 16 12 H 0.09 3.26 6.08 -2.38 -0.01 3.25 16 13 C -0.08 -3.00 6.12 30.38 0.19 -2.82 16 14 C -0.12 -4.86 5.89 30.80 0.18 -4.68 16 15 C 0.17 8.49 5.31 85.97 0.46 8.95 16 16 N -0.58 -28.42 2.83 -691.51 -1.96 -30.38 16 17 C -0.24 -12.47 9.07 84.03 0.76 -11.70 16 18 H 0.09 4.27 5.17 -2.91 -0.02 4.26 16 19 C -0.06 -3.30 5.08 84.86 0.43 -2.87 16 20 N -0.94 -56.00 11.06 21.65 0.24 -55.76 16 21 Si 0.96 44.89 29.58 68.60 2.03 46.92 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.13 5.44 3.05 42.87 0.13 5.57 16 26 H 0.04 1.73 8.01 -2.39 -0.02 1.71 16 27 C -0.06 -1.92 1.37 -55.17 -0.08 -1.99 16 28 C -0.13 -3.89 9.21 71.98 0.66 -3.22 16 29 C -0.12 -3.70 6.90 71.98 0.50 -3.20 16 30 N -0.35 -8.24 11.84 -49.52 -0.59 -8.83 16 31 O 0.13 2.37 11.18 71.84 0.80 3.18 16 32 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.41 10.67 6.54 -92.70 -0.61 10.06 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.94 8.06 -2.39 -0.02 1.93 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 44 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 49 H 0.06 2.06 5.74 -2.38 -0.01 2.04 16 50 H 0.06 1.99 7.02 -2.39 -0.02 1.97 16 51 H 0.07 1.74 6.60 -2.39 -0.02 1.72 16 Total: -1.00 -68.01 397.85 4.03 -63.98 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.34 Total: 24.63 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.66 Total: -2.23 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.74 Total: -116.92 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.74 Total: -16.38 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.01 4.03 -63.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.219 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds