Wall clock time and date at job start Wed Apr 1 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46952 * 2 1 4 4 C 1.38357 * 120.27159 * 271.19809 * 3 2 1 5 5 N 1.31882 * 121.18529 * 179.75066 * 4 3 2 6 6 C 1.32244 * 121.79596 * 0.56421 * 5 4 3 7 7 O 1.35425 * 119.79581 * 179.71486 * 6 5 4 8 8 C 1.40281 * 120.40074 * 359.44165 * 6 5 4 9 9 C 1.47525 * 120.59373 * 180.29047 * 8 6 5 10 10 O 1.21588 * 120.00142 * 33.37554 * 9 8 6 11 11 N 1.34776 * 119.99935 * 213.37050 * 9 8 6 12 12 C 1.45333 * 120.36497 * 145.35905 * 11 9 8 13 13 C 1.53449 * 108.41354 * 136.65958 * 12 11 9 14 14 C 1.52873 * 109.38409 * 282.27554 * 13 12 11 15 15 C 1.53956 * 109.73124 * 72.89900 * 14 13 12 16 16 C 1.52442 * 110.73071 * 44.36317 * 15 14 13 17 17 C 1.53802 * 109.40448 * 246.27250 * 16 15 14 18 18 H 1.08997 * 109.52421 * 317.87061 * 17 16 15 19 19 N 1.46504 * 109.52282 * 197.74062 * 17 16 15 20 20 C 1.36941 * 119.99903 * 165.64288 * 19 17 16 21 21 H 1.07997 * 119.99719 * 327.79057 * 20 19 17 22 22 C 1.38805 * 120.00003 * 147.78924 * 20 19 17 23 23 N 1.31618 * 120.00053 * 194.24611 * 22 20 19 24 24 Si 1.86807 * 119.99979 * 14.25579 * 22 20 19 25 25 H 1.48496 * 109.47147 * 89.99727 * 24 22 20 26 26 H 1.48500 * 109.46677 * 209.99717 * 24 22 20 27 27 H 1.48504 * 109.46866 * 329.99266 * 24 22 20 28 28 C 1.46972 * 120.36560 * 325.07982 * 11 9 8 29 29 C 1.38332 * 120.27084 * 91.22776 * 3 2 1 30 30 H 1.08996 * 109.47242 * 187.25241 * 1 2 3 31 31 H 1.09008 * 109.46640 * 307.24979 * 1 2 3 32 32 H 1.08996 * 109.47561 * 67.25055 * 1 2 3 33 33 H 1.09005 * 109.46869 * 240.00543 * 2 1 3 34 34 H 1.08997 * 109.47525 * 120.00404 * 2 1 3 35 35 H 1.07996 * 119.40926 * 0.02783 * 4 3 2 36 36 H 0.96710 * 113.99776 * 269.72506 * 7 6 5 37 37 H 1.09006 * 109.67300 * 256.38545 * 12 11 9 38 38 H 1.08997 * 109.67720 * 16.89141 * 12 11 9 39 39 H 1.08993 * 109.48460 * 42.25092 * 13 12 11 40 40 H 1.08992 * 109.48236 * 162.28772 * 13 12 11 41 41 H 1.09003 * 109.42913 * 192.97792 * 14 13 12 42 42 H 1.09004 * 109.43238 * 312.82368 * 14 13 12 43 43 H 1.09001 * 109.22701 * 164.68679 * 15 14 13 44 44 H 1.09005 * 109.22138 * 284.08632 * 15 14 13 45 45 H 1.08992 * 109.48352 * 6.25491 * 16 15 14 46 46 H 1.09002 * 109.47868 * 126.29574 * 16 15 14 47 47 H 0.97000 * 119.99984 * 345.63676 * 19 17 16 48 48 H 0.97003 * 119.99837 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.52636 * 51.52707 * 28 11 9 50 50 H 1.08998 * 109.53197 * 171.75114 * 28 11 9 51 51 H 1.08003 * 120.82245 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2412 2.0867 -1.1947 5 7 2.6757 3.3318 -1.2156 6 6 2.9414 3.9958 -0.1033 7 8 3.3913 5.2713 -0.1721 8 6 2.7547 3.3889 1.1476 9 6 3.0437 4.1279 2.3913 10 8 2.8547 5.3279 2.4434 11 7 3.5173 3.4729 3.4698 12 6 4.4667 4.1168 4.3621 13 6 4.0530 3.8158 5.8088 14 6 2.8784 4.7136 6.1980 15 6 1.5994 4.2325 5.4888 16 6 1.4772 2.7151 5.5672 17 6 1.6093 2.1182 4.1558 18 1 1.0464 2.7274 3.4486 19 7 1.0833 0.7509 4.1513 20 6 0.8216 0.1219 2.9634 21 1 0.4939 0.6958 2.1092 22 6 0.9776 -1.2533 2.8571 23 7 1.0030 -1.8230 1.6709 24 14 1.1511 -2.2955 4.3977 25 1 -0.1928 -2.7329 4.8534 26 1 1.9843 -3.4875 4.0976 27 1 1.7999 -1.4944 5.4667 28 6 3.0746 2.1018 3.7599 29 6 2.2889 2.0697 1.1944 30 1 -0.3633 -1.0194 0.1297 31 1 -0.3633 0.6221 0.8181 32 1 -0.3634 0.3974 -0.9477 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0407 1.5794 -2.1267 36 1 4.3547 5.3470 -0.2108 37 1 5.4672 3.7256 4.1775 38 1 4.4567 5.1936 4.1934 39 1 3.7550 2.7707 5.8918 40 1 4.8941 4.0081 6.4748 41 1 2.7321 4.6717 7.2773 42 1 3.0930 5.7403 5.9014 43 1 0.7315 4.6877 5.9661 44 1 1.6336 4.5357 4.4423 45 1 2.2675 2.3191 6.2047 46 1 0.5058 2.4497 5.9846 47 1 0.9206 0.2910 4.9897 48 1 1.1124 -2.7840 1.5966 49 1 3.1983 1.4833 2.8709 50 1 3.6694 1.6918 4.5761 51 1 2.1336 1.5709 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088406101.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:20 Heat of formation + Delta-G solvation = 31.636177 kcal Electronic energy + Delta-G solvation = -34269.465799 eV Core-core repulsion = 30171.990867 eV Total energy + Delta-G solvation = -4097.474932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94743 -39.40813 -37.68734 -36.77906 -35.40470 -34.13514 -33.67080 -32.42712 -31.31140 -30.36342 -28.19358 -27.65731 -26.45233 -24.73272 -23.55379 -23.15929 -22.45114 -21.31265 -20.75747 -19.68589 -18.77359 -18.34603 -17.67619 -16.98238 -16.48934 -16.07063 -15.78628 -15.43552 -14.89786 -14.75935 -14.35812 -14.02173 -13.87548 -13.70381 -13.45331 -13.07139 -12.83931 -12.77904 -12.61393 -12.44605 -12.20957 -11.90651 -11.81563 -11.57715 -11.39618 -11.30731 -11.21299 -10.98794 -10.86656 -10.69616 -10.50602 -10.40451 -10.31279 -10.27178 -10.23546 -9.99206 -9.63120 -9.30061 -9.20311 -8.93445 -8.54896 -8.16939 -8.05030 -7.22589 -5.96946 -3.63345 1.10660 1.69887 2.96047 3.19355 3.26988 3.28731 3.32711 3.89849 4.23879 4.33025 4.64776 4.91970 4.98853 5.02579 5.07708 5.22412 5.25550 5.27787 5.36622 5.46347 5.60121 5.65069 5.67852 5.75785 5.81861 5.87304 5.89287 5.96059 5.99559 6.00945 6.06611 6.19596 6.38311 6.39687 6.39980 6.43394 6.55720 6.64485 6.72014 6.77335 6.79902 6.90964 7.00769 7.08246 7.32154 7.61193 7.66303 7.82075 7.88135 8.10887 8.27892 8.35759 8.40582 8.96634 9.61532 9.91933 10.89980 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.006939 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.352002 B = 4034.451832 C = 6718.975033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.122 4.122 4 C 0.120 3.880 5 N -0.512 5.512 6 C 0.329 3.671 7 O -0.468 6.468 8 C -0.209 4.209 9 C 0.581 3.419 10 O -0.514 6.514 11 N -0.623 5.623 12 C 0.120 3.880 13 C -0.149 4.149 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.159 3.841 18 H 0.049 0.951 19 N -0.745 5.745 20 C -0.290 4.290 21 H 0.112 0.888 22 C 0.025 3.975 23 N -0.886 5.886 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.069 3.931 29 C -0.070 4.070 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.005 0.995 33 H 0.040 0.960 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.390 0.610 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.359 0.641 48 H 0.262 0.738 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 5.265 4.303 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.135 4.135 3 C -0.124 4.124 4 C -0.037 4.037 5 N -0.230 5.230 6 C 0.148 3.852 7 O -0.273 6.273 8 C -0.216 4.216 9 C 0.371 3.629 10 O -0.389 6.389 11 N -0.359 5.359 12 C -0.003 4.003 13 C -0.186 4.186 14 C -0.148 4.148 15 C -0.159 4.159 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.067 0.933 19 N -0.388 5.388 20 C -0.418 4.418 21 H 0.129 0.871 22 C -0.173 4.173 23 N -0.531 5.531 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.199 1.199 28 C -0.055 4.055 29 C -0.094 4.094 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.185 0.815 35 H 0.172 0.828 36 H 0.246 0.754 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.192 0.808 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.098 0.902 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.087 6.463 3.312 9.476 hybrid contribution 0.345 -1.271 1.588 2.063 sum 6.432 5.192 4.900 9.609 Atomic orbital electron populations 1.21576 0.94959 1.03136 0.97056 1.21565 0.96910 0.87737 1.07265 1.21702 0.97624 1.00628 0.92483 1.22708 0.93983 0.88471 0.98516 1.67154 1.15206 1.09425 1.31236 1.19020 0.95224 0.84148 0.86782 1.84798 1.26660 1.20256 1.95582 1.21227 1.09799 0.96477 0.94126 1.17900 0.76147 0.86337 0.82562 1.90747 1.48569 1.15788 1.83834 1.47437 1.46627 1.16374 1.25430 1.21383 0.91016 0.98793 0.89065 1.22328 0.98413 1.02076 0.95831 1.21662 0.94895 0.98984 0.99264 1.21671 0.96723 0.95386 1.02097 1.21996 1.01803 0.95303 0.97406 1.20878 0.91393 0.87693 0.95103 0.93292 1.42715 1.77054 1.13392 1.05668 1.19729 1.39560 0.91771 0.90785 0.87070 1.25063 0.98614 0.97566 0.96085 1.69621 1.52693 1.10464 1.20334 0.86585 0.77796 0.80151 0.84258 1.21162 1.21834 1.19865 1.23014 0.97846 0.81750 1.02902 1.24045 0.90412 0.91326 1.03652 0.90331 0.93134 0.97638 0.94133 0.81522 0.82836 0.75414 0.92560 0.89912 0.89656 0.91522 0.92654 0.92115 0.92944 0.90881 0.91469 0.91892 0.80773 0.92620 0.88241 0.90165 0.77157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 8.29 37.16 0.31 -1.90 16 2 C -0.10 -1.90 4.61 -27.88 -0.13 -2.03 16 3 C -0.12 -2.31 5.09 -104.54 -0.53 -2.84 16 4 C 0.12 2.13 10.84 -17.49 -0.19 1.94 16 5 N -0.51 -9.64 10.37 -12.98 -0.13 -9.77 16 6 C 0.33 6.20 7.74 -16.61 -0.13 6.07 16 7 O -0.47 -8.10 12.17 -36.07 -0.44 -8.54 16 8 C -0.21 -3.96 5.83 -104.69 -0.61 -4.57 16 9 C 0.58 10.52 5.23 -12.47 -0.07 10.46 16 10 O -0.51 -10.38 15.16 -12.82 -0.19 -10.57 16 11 N -0.62 -9.57 1.69 -175.91 -0.30 -9.86 16 12 C 0.12 1.53 6.08 -4.44 -0.03 1.50 16 13 C -0.15 -1.66 5.45 -26.56 -0.14 -1.81 16 14 C -0.11 -1.32 5.75 -26.30 -0.15 -1.47 16 15 C -0.12 -1.71 5.40 -26.52 -0.14 -1.86 16 16 C -0.13 -1.86 4.92 -26.60 -0.13 -1.99 16 17 C 0.16 2.73 1.84 -68.12 -0.13 2.60 16 18 H 0.05 0.98 6.46 -51.93 -0.34 0.64 16 19 N -0.74 -14.40 4.81 -53.61 -0.26 -14.66 16 20 C -0.29 -6.29 7.13 -15.06 -0.11 -6.40 16 21 H 0.11 2.56 2.61 -52.49 -0.14 2.42 16 22 C 0.03 0.56 5.19 -17.43 -0.09 0.47 16 23 N -0.89 -20.17 7.73 55.49 0.43 -19.74 16 24 Si 0.88 18.31 27.87 -169.99 -4.74 13.57 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -5.44 6.61 56.52 0.37 -5.07 16 28 C 0.07 1.10 4.35 -4.39 -0.02 1.08 16 29 C -0.07 -1.35 6.56 -38.89 -0.25 -1.60 16 30 H 0.08 1.67 6.75 -51.93 -0.35 1.32 16 31 H 0.05 1.09 5.72 -51.92 -0.30 0.79 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.17 3.66 3.66 -55.88 -0.20 3.46 16 35 H 0.15 2.33 8.06 -52.49 -0.42 1.90 16 36 H 0.39 4.74 9.06 45.56 0.41 5.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.11 6.99 -51.93 -0.36 0.75 16 39 H 0.09 1.01 3.35 -51.93 -0.17 0.84 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.24 4.94 -51.93 -0.26 0.99 16 45 H 0.07 0.90 5.47 -51.93 -0.28 0.62 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.36 6.85 6.20 -40.82 -0.25 6.60 16 48 H 0.26 5.94 8.31 -40.82 -0.34 5.60 16 49 H 0.10 1.79 4.51 -51.93 -0.23 1.56 16 50 H 0.08 1.17 6.06 -51.93 -0.31 0.85 16 51 H 0.21 4.09 0.54 -52.48 -0.03 4.06 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -25.50 354.44 -8.60 -34.10 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -5.77 Total: 22.46 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.54 Total: -2.34 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.26 Total: -54.03 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.63 Total: -19.11 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.74 Total: 13.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -25.50 -8.60 -34.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406101.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.741 kcal (2) G-P(sol) polarization free energy of solvation -25.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds