Wall clock time and date at job start Wed Apr 1 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46952 * 2 1 4 4 C 1.38357 * 120.27159 * 271.19809 * 3 2 1 5 5 N 1.31882 * 121.18529 * 179.75066 * 4 3 2 6 6 C 1.32244 * 121.79596 * 0.56421 * 5 4 3 7 7 O 1.35425 * 119.79581 * 179.71486 * 6 5 4 8 8 C 1.40281 * 120.40074 * 359.44165 * 6 5 4 9 9 C 1.47525 * 120.59373 * 180.29047 * 8 6 5 10 10 O 1.21588 * 120.00142 * 33.37554 * 9 8 6 11 11 N 1.34776 * 119.99935 * 213.37050 * 9 8 6 12 12 C 1.45333 * 120.36497 * 145.35905 * 11 9 8 13 13 C 1.53449 * 108.41354 * 136.65958 * 12 11 9 14 14 C 1.52873 * 109.38409 * 282.27554 * 13 12 11 15 15 C 1.53956 * 109.73124 * 72.89900 * 14 13 12 16 16 C 1.52442 * 110.73071 * 44.36317 * 15 14 13 17 17 C 1.53802 * 109.40448 * 246.27250 * 16 15 14 18 18 H 1.08997 * 109.52421 * 317.87061 * 17 16 15 19 19 N 1.46504 * 109.52282 * 197.74062 * 17 16 15 20 20 C 1.36941 * 119.99903 * 165.64288 * 19 17 16 21 21 H 1.07997 * 119.99719 * 327.79057 * 20 19 17 22 22 C 1.38805 * 120.00003 * 147.78924 * 20 19 17 23 23 N 1.31618 * 120.00053 * 194.24611 * 22 20 19 24 24 Si 1.86807 * 119.99979 * 14.25579 * 22 20 19 25 25 H 1.48496 * 109.47147 * 89.99727 * 24 22 20 26 26 H 1.48500 * 109.46677 * 209.99717 * 24 22 20 27 27 H 1.48504 * 109.46866 * 329.99266 * 24 22 20 28 28 C 1.46972 * 120.36560 * 325.07982 * 11 9 8 29 29 C 1.38332 * 120.27084 * 91.22776 * 3 2 1 30 30 H 1.08996 * 109.47242 * 187.25241 * 1 2 3 31 31 H 1.09008 * 109.46640 * 307.24979 * 1 2 3 32 32 H 1.08996 * 109.47561 * 67.25055 * 1 2 3 33 33 H 1.09005 * 109.46869 * 240.00543 * 2 1 3 34 34 H 1.08997 * 109.47525 * 120.00404 * 2 1 3 35 35 H 1.07996 * 119.40926 * 0.02783 * 4 3 2 36 36 H 0.96710 * 113.99776 * 269.72506 * 7 6 5 37 37 H 1.09006 * 109.67300 * 256.38545 * 12 11 9 38 38 H 1.08997 * 109.67720 * 16.89141 * 12 11 9 39 39 H 1.08993 * 109.48460 * 42.25092 * 13 12 11 40 40 H 1.08992 * 109.48236 * 162.28772 * 13 12 11 41 41 H 1.09003 * 109.42913 * 192.97792 * 14 13 12 42 42 H 1.09004 * 109.43238 * 312.82368 * 14 13 12 43 43 H 1.09001 * 109.22701 * 164.68679 * 15 14 13 44 44 H 1.09005 * 109.22138 * 284.08632 * 15 14 13 45 45 H 1.08992 * 109.48352 * 6.25491 * 16 15 14 46 46 H 1.09002 * 109.47868 * 126.29574 * 16 15 14 47 47 H 0.97000 * 119.99984 * 345.63676 * 19 17 16 48 48 H 0.97003 * 119.99837 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.52636 * 51.52707 * 28 11 9 50 50 H 1.08998 * 109.53197 * 171.75114 * 28 11 9 51 51 H 1.08003 * 120.82245 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2412 2.0867 -1.1947 5 7 2.6757 3.3318 -1.2156 6 6 2.9414 3.9958 -0.1033 7 8 3.3913 5.2713 -0.1721 8 6 2.7547 3.3889 1.1476 9 6 3.0437 4.1279 2.3913 10 8 2.8547 5.3279 2.4434 11 7 3.5173 3.4729 3.4698 12 6 4.4667 4.1168 4.3621 13 6 4.0530 3.8158 5.8088 14 6 2.8784 4.7136 6.1980 15 6 1.5994 4.2325 5.4888 16 6 1.4772 2.7151 5.5672 17 6 1.6093 2.1182 4.1558 18 1 1.0464 2.7274 3.4486 19 7 1.0833 0.7509 4.1513 20 6 0.8216 0.1219 2.9634 21 1 0.4939 0.6958 2.1092 22 6 0.9776 -1.2533 2.8571 23 7 1.0030 -1.8230 1.6709 24 14 1.1511 -2.2955 4.3977 25 1 -0.1928 -2.7329 4.8534 26 1 1.9843 -3.4875 4.0976 27 1 1.7999 -1.4944 5.4667 28 6 3.0746 2.1018 3.7599 29 6 2.2889 2.0697 1.1944 30 1 -0.3633 -1.0194 0.1297 31 1 -0.3633 0.6221 0.8181 32 1 -0.3634 0.3974 -0.9477 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0407 1.5794 -2.1267 36 1 4.3547 5.3470 -0.2108 37 1 5.4672 3.7256 4.1775 38 1 4.4567 5.1936 4.1934 39 1 3.7550 2.7707 5.8918 40 1 4.8941 4.0081 6.4748 41 1 2.7321 4.6717 7.2773 42 1 3.0930 5.7403 5.9014 43 1 0.7315 4.6877 5.9661 44 1 1.6336 4.5357 4.4423 45 1 2.2675 2.3191 6.2047 46 1 0.5058 2.4497 5.9846 47 1 0.9206 0.2910 4.9897 48 1 1.1124 -2.7840 1.5966 49 1 3.1983 1.4833 2.8709 50 1 3.6694 1.6918 4.5761 51 1 2.1336 1.5709 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088406101.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:19 Heat of formation + Delta-G solvation = 15.779918 kcal Electronic energy + Delta-G solvation = -34270.153378 eV Core-core repulsion = 30171.990867 eV Total energy + Delta-G solvation = -4098.162511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31986 -40.75062 -39.10389 -38.14746 -36.79794 -35.40750 -35.14897 -33.91564 -32.78397 -31.72999 -29.71950 -28.96456 -27.62102 -26.14700 -25.04057 -24.65043 -23.72457 -22.68840 -22.18159 -20.88704 -20.08962 -19.81666 -19.22024 -18.35302 -17.85934 -17.42026 -17.07126 -16.78882 -16.48313 -16.08485 -15.70200 -15.29358 -15.25223 -15.15971 -14.93953 -14.30448 -14.21426 -14.12620 -14.06531 -13.81281 -13.51634 -13.43193 -13.23676 -12.93424 -12.82189 -12.72051 -12.59824 -12.51573 -12.16650 -12.01147 -11.96961 -11.82896 -11.65357 -11.55011 -11.43185 -11.23667 -11.07248 -10.89250 -10.71915 -10.41107 -10.12548 -9.64511 -9.39338 -8.80435 -7.67000 -5.33209 -0.33039 0.22942 1.52276 1.55498 1.60370 1.62999 2.01555 2.53934 2.62453 2.79455 3.24756 3.40499 3.75029 3.84577 3.86398 3.98509 4.00970 4.09281 4.15056 4.19207 4.22846 4.38957 4.45857 4.51876 4.54875 4.61434 4.70234 4.80279 4.84623 4.86895 4.93954 5.00822 5.05054 5.10797 5.17032 5.20282 5.21732 5.24963 5.37913 5.43345 5.46239 5.60170 5.60499 5.73942 5.80531 5.95369 6.19250 6.30367 6.44453 6.56542 6.70115 6.85213 7.04383 7.31162 7.96567 8.26331 9.18472 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.006939 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.352002 B = 4034.451832 C = 6718.975033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.126 3.874 5 N -0.521 5.521 6 C 0.326 3.674 7 O -0.476 6.476 8 C -0.223 4.223 9 C 0.583 3.417 10 O -0.541 6.541 11 N -0.612 5.612 12 C 0.113 3.887 13 C -0.142 4.142 14 C -0.107 4.107 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.164 3.836 18 H 0.016 0.984 19 N -0.747 5.747 20 C -0.282 4.282 21 H 0.097 0.903 22 C -0.009 4.009 23 N -0.898 5.898 24 Si 0.925 3.075 25 H -0.298 1.298 26 H -0.305 1.305 27 H -0.255 1.255 28 C 0.077 3.923 29 C -0.077 4.077 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.149 0.851 35 H 0.182 0.818 36 H 0.411 0.589 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.362 0.638 48 H 0.256 0.744 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 5.707 5.838 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.136 4.136 4 C -0.031 4.031 5 N -0.240 5.240 6 C 0.146 3.854 7 O -0.285 6.285 8 C -0.230 4.230 9 C 0.372 3.628 10 O -0.418 6.418 11 N -0.346 5.346 12 C -0.009 4.009 13 C -0.180 4.180 14 C -0.144 4.144 15 C -0.157 4.157 16 C -0.157 4.157 17 C 0.055 3.945 18 H 0.034 0.966 19 N -0.391 5.391 20 C -0.411 4.411 21 H 0.114 0.886 22 C -0.206 4.206 23 N -0.544 5.544 24 Si 0.755 3.245 25 H -0.226 1.226 26 H -0.232 1.232 27 H -0.180 1.180 28 C -0.047 4.047 29 C -0.101 4.101 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.199 0.801 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.196 0.804 48 H 0.067 0.933 49 H 0.098 0.902 50 H 0.122 0.878 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.628 6.927 4.884 11.403 hybrid contribution -0.148 -1.340 1.068 1.720 sum 7.480 5.588 5.952 11.072 Atomic orbital electron populations 1.21415 0.95524 1.01652 0.96906 1.21328 0.96285 0.88177 1.06765 1.21665 0.98550 1.00399 0.92993 1.23079 0.92673 0.88167 0.99154 1.67246 1.15762 1.09796 1.31190 1.19185 0.94912 0.84442 0.86883 1.84735 1.28725 1.19490 1.95526 1.21378 1.10231 0.96511 0.94844 1.17845 0.76026 0.85946 0.83013 1.90726 1.50040 1.16743 1.84338 1.47400 1.46267 1.15996 1.24984 1.21667 0.91261 0.98327 0.89603 1.22306 0.99158 1.01497 0.95011 1.21653 0.93783 0.98813 1.00179 1.21628 0.98519 0.95017 1.00556 1.21948 1.02560 0.95479 0.95756 1.20812 0.91513 0.86039 0.96133 0.96595 1.42709 1.77383 1.13988 1.04989 1.19659 1.38647 0.91706 0.91115 0.88632 1.25443 0.99411 0.98283 0.97475 1.69776 1.53603 1.09959 1.21085 0.85900 0.76713 0.78841 0.83016 1.22594 1.23213 1.17956 1.22807 0.97325 0.81794 1.02745 1.24095 0.90500 0.91625 1.03862 0.91859 0.95330 0.96063 0.93035 0.83490 0.80127 0.72940 0.90327 0.90657 0.89914 0.88417 0.90528 0.92491 0.92614 0.94001 0.89336 0.92052 0.80445 0.93312 0.90241 0.87805 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 8.29 71.98 0.60 -3.39 16 2 C -0.09 -3.46 4.61 29.85 0.14 -3.32 16 3 C -0.13 -5.06 5.09 -19.81 -0.10 -5.16 16 4 C 0.13 4.36 10.84 84.71 0.92 5.28 16 5 N -0.52 -19.24 10.37 -307.99 -3.19 -22.44 16 6 C 0.33 12.21 7.74 85.13 0.66 12.87 16 7 O -0.48 -16.24 12.17 -69.89 -0.85 -17.09 16 8 C -0.22 -8.47 5.83 -19.91 -0.12 -8.59 16 9 C 0.58 21.07 5.23 86.69 0.45 21.52 16 10 O -0.54 -21.94 15.16 13.32 0.20 -21.74 16 11 N -0.61 -18.13 1.69 -828.71 -1.40 -19.53 16 12 C 0.11 2.58 6.08 86.75 0.53 3.11 16 13 C -0.14 -2.64 5.45 30.70 0.17 -2.48 16 14 C -0.11 -2.22 5.75 30.87 0.18 -2.05 16 15 C -0.12 -3.21 5.40 30.73 0.17 -3.04 16 16 C -0.12 -3.28 4.92 30.68 0.15 -3.13 16 17 C 0.16 5.55 1.84 44.87 0.08 5.64 16 18 H 0.02 0.66 6.46 -2.39 -0.02 0.64 16 19 N -0.75 -28.50 4.81 -323.53 -1.56 -30.06 16 20 C -0.28 -12.36 7.13 84.03 0.60 -11.76 16 21 H 0.10 4.54 2.61 -2.91 -0.01 4.53 16 22 C -0.01 -0.42 5.19 84.86 0.44 0.02 16 23 N -0.90 -41.58 7.73 21.65 0.17 -41.41 16 24 Si 0.93 37.37 27.87 68.60 1.91 39.28 16 25 H -0.30 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.30 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.26 -9.44 6.61 99.48 0.66 -8.78 16 28 C 0.08 2.38 4.35 85.89 0.37 2.75 16 29 C -0.08 -2.98 6.56 22.72 0.15 -2.83 16 30 H 0.06 2.75 6.75 -2.39 -0.02 2.73 16 31 H 0.03 1.26 5.72 -2.38 -0.01 1.25 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.86 8.10 -2.38 -0.02 1.85 16 34 H 0.15 6.57 3.66 -10.19 -0.04 6.54 16 35 H 0.18 5.14 8.06 -2.91 -0.02 5.12 16 36 H 0.41 9.63 9.06 -74.05 -0.67 8.96 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.88 6.99 -2.39 -0.02 1.87 16 39 H 0.08 1.61 3.35 -2.39 -0.01 1.60 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.25 7.87 -2.38 -0.02 1.23 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.41 4.94 -2.38 -0.01 1.40 16 45 H 0.09 2.06 5.47 -2.39 -0.01 2.05 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.36 13.30 6.20 -92.71 -0.58 12.72 16 48 H 0.26 11.80 8.31 -92.71 -0.77 11.03 16 49 H 0.08 2.85 4.51 -2.39 -0.01 2.84 16 50 H 0.10 2.72 6.06 -2.39 -0.01 2.71 16 51 H 0.21 8.21 0.54 -2.91 0.00 8.21 16 Total: -1.00 -55.70 354.44 0.37 -55.33 By element: Atomic # 1 Polarization: 52.51 SS G_CDS: -0.29 Total: 52.22 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.38 Total: 5.44 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -5.98 Total: -113.44 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.65 Total: -38.83 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.91 Total: 39.28 kcal Total: -55.70 0.37 -55.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406101.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.113 kcal (2) G-P(sol) polarization free energy of solvation -55.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds