Wall clock time and date at job start Wed Apr 1 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47052 * 2 1 4 4 C 1.38359 * 120.26848 * 89.99843 * 3 2 1 5 5 N 1.31872 * 121.18748 * 179.97438 * 4 3 2 6 6 C 1.32241 * 121.80084 * 0.02562 * 5 4 3 7 7 O 1.35431 * 119.79999 * 180.02562 * 6 5 4 8 8 C 1.40271 * 120.39883 * 359.97438 * 6 5 4 9 9 C 1.47529 * 120.59762 * 179.97438 * 8 6 5 10 10 O 1.21589 * 119.99612 * 305.65431 * 9 8 6 11 11 N 1.34776 * 119.99928 * 125.65728 * 9 8 6 12 12 C 1.47093 * 120.15678 * 354.01457 * 11 9 8 13 13 C 1.53634 * 107.40142 * 107.90009 * 12 11 9 14 14 C 1.53485 * 108.44277 * 69.80848 * 13 12 11 15 15 C 1.52463 * 109.15210 * 245.77939 * 14 13 12 16 16 C 1.53124 * 109.66624 * 43.92887 * 15 14 13 17 17 C 1.53429 * 109.34377 * 77.05219 * 16 15 14 18 18 H 1.08999 * 109.63710 * 47.36403 * 17 16 15 19 19 N 1.46502 * 109.63162 * 167.95709 * 17 16 15 20 20 C 1.36937 * 120.00292 * 204.00658 * 19 17 16 21 21 H 1.08007 * 119.99728 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00424 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99746 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47190 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47459 * 120.00203 * 24 22 20 27 27 H 1.48501 * 109.47288 * 240.00007 * 24 22 20 28 28 C 1.46064 * 120.17590 * 174.28883 * 11 9 8 29 29 C 1.38333 * 120.27602 * 270.26485 * 3 2 1 30 30 H 1.09004 * 109.47514 * 299.99349 * 1 2 3 31 31 H 1.09000 * 109.47740 * 59.99804 * 1 2 3 32 32 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47273 * 240.00731 * 2 1 3 34 34 H 1.08993 * 109.47339 * 120.00711 * 2 1 3 35 35 H 1.08001 * 119.40744 * 0.03152 * 4 3 2 36 36 H 0.96695 * 114.00091 * 269.97659 * 7 6 5 37 37 H 1.09002 * 109.88129 * 348.45195 * 12 11 9 38 38 H 1.09002 * 109.93436 * 227.38123 * 12 11 9 39 39 H 1.08999 * 109.63991 * 310.12007 * 13 12 11 40 40 H 1.08998 * 109.63958 * 189.49304 * 13 12 11 41 41 H 1.09000 * 109.52370 * 125.88470 * 14 13 12 42 42 H 1.08994 * 109.53060 * 5.68517 * 14 13 12 43 43 H 1.08996 * 109.43713 * 283.87424 * 15 14 13 44 44 H 1.09002 * 109.43983 * 163.98907 * 15 14 13 45 45 H 1.09002 * 109.49453 * 317.09186 * 16 15 14 46 46 H 1.09000 * 109.51592 * 197.02240 * 16 15 14 47 47 H 0.96996 * 120.00206 * 24.00502 * 19 17 16 48 48 H 0.97007 * 119.99783 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.36196 * 172.82923 * 28 11 9 50 50 H 1.09000 * 109.36111 * 53.09844 * 28 11 9 51 51 H 1.08002 * 120.82202 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2647 2.0784 1.1950 5 7 2.7047 3.3213 1.2161 6 6 2.9430 3.9953 0.1035 7 8 3.3948 5.2701 0.1725 8 6 2.7316 3.3973 -1.1476 9 6 2.9955 4.1452 -2.3916 10 8 2.4698 5.2263 -2.5740 11 7 3.8193 3.6301 -3.3257 12 6 4.5591 2.3881 -3.0545 13 6 3.9191 1.2777 -3.9018 14 6 4.2440 1.5450 -5.3779 15 6 2.9534 1.8640 -6.1243 16 6 2.1020 2.8276 -5.2930 17 6 2.6784 4.2448 -5.4094 18 1 2.8778 4.4743 -6.4561 19 7 1.7225 5.2113 -4.8631 20 6 1.7578 6.5168 -5.2748 21 1 2.4907 6.8341 -6.0019 22 6 0.8518 7.4325 -4.7576 23 7 -0.0417 7.0458 -3.8719 24 14 0.8996 9.2133 -5.3198 25 1 1.9886 9.3894 -6.3139 26 1 -0.4008 9.5715 -5.9407 27 1 1.1496 10.0948 -4.1511 28 6 3.9864 4.3055 -4.6100 29 6 2.2595 2.0802 -1.1946 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8898 35 1 2.0834 1.5641 2.1272 36 1 2.6934 5.9354 0.1926 37 1 4.4848 2.1357 -1.9967 38 1 5.6056 2.5103 -3.3341 39 1 2.8387 1.2835 -3.7575 40 1 4.3261 0.3108 -3.6063 41 1 4.7082 0.6608 -5.8146 42 1 4.9270 2.3910 -5.4533 43 1 2.3962 0.9429 -6.2953 44 1 3.1930 2.3256 -7.0822 45 1 2.1135 2.5150 -4.2488 46 1 1.0770 2.8204 -5.6636 47 1 1.0645 4.9265 -4.2098 48 1 -0.6746 7.6858 -3.5102 49 1 4.7787 3.8152 -5.1757 50 1 4.2568 5.3473 -4.4379 51 1 2.0818 1.5894 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088406102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:23 Heat of formation + Delta-G solvation = 2.173660 kcal Electronic energy + Delta-G solvation = -33485.599249 eV Core-core repulsion = 29386.846726 eV Total energy + Delta-G solvation = -4098.752523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.95516 -39.59260 -37.43929 -36.86366 -34.78624 -34.30788 -33.60366 -32.26244 -31.70199 -29.42875 -29.13840 -27.00076 -26.57865 -24.58206 -24.06343 -23.57233 -22.84501 -21.87264 -20.48785 -19.97115 -18.69377 -18.19608 -17.19237 -16.99210 -16.70446 -15.90737 -15.52462 -15.40730 -15.07987 -14.63750 -14.40845 -14.16735 -14.12980 -13.93915 -13.60076 -13.38720 -13.12954 -12.96890 -12.85044 -12.67291 -12.34271 -12.00427 -11.92234 -11.82905 -11.70419 -11.64703 -11.39851 -11.20997 -10.88335 -10.87280 -10.71596 -10.64920 -10.32123 -10.10281 -10.04877 -9.77459 -9.66125 -9.61588 -9.35681 -8.99094 -8.74606 -8.64973 -8.01641 -6.57968 -5.49489 -2.74501 0.81878 1.11658 3.21439 3.42238 3.55408 3.59973 3.60995 3.62734 3.90611 4.48294 4.58878 4.71558 4.74903 4.80393 4.84526 4.91403 4.94111 5.12998 5.14770 5.26064 5.35411 5.37347 5.43243 5.46759 5.56247 5.59936 5.65888 5.72553 5.74656 5.76057 5.83371 5.86003 5.93862 6.02843 6.03782 6.12617 6.17954 6.19890 6.28463 6.34797 6.40874 6.43074 6.65382 6.73648 6.85353 6.94815 7.25258 7.62753 7.87076 7.88859 7.97994 8.66070 8.92596 9.79409 10.40372 10.73896 11.72907 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004724 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.072371 B = 5925.155213 C = 7351.269660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.154 4.154 4 C 0.133 3.867 5 N -0.503 5.503 6 C 0.347 3.653 7 O -0.476 6.476 8 C -0.170 4.170 9 C 0.539 3.461 10 O -0.435 6.435 11 N -0.602 5.602 12 C 0.107 3.893 13 C -0.148 4.148 14 C -0.128 4.128 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.165 3.835 18 H 0.053 0.947 19 N -0.702 5.702 20 C -0.224 4.224 21 H 0.063 0.937 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.895 3.105 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.295 1.295 28 C 0.092 3.908 29 C -0.036 4.036 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.385 0.615 48 H 0.247 0.753 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -19.409 5.597 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.156 4.156 4 C -0.025 4.025 5 N -0.221 5.221 6 C 0.168 3.832 7 O -0.285 6.285 8 C -0.177 4.177 9 C 0.322 3.678 10 O -0.302 6.302 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.186 4.186 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.173 4.173 17 C 0.053 3.947 18 H 0.071 0.929 19 N -0.343 5.343 20 C -0.356 4.356 21 H 0.081 0.919 22 C -0.202 4.202 23 N -0.570 5.570 24 Si 0.728 3.272 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.223 1.223 28 C -0.032 4.032 29 C -0.062 4.062 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.175 0.825 36 H 0.273 0.727 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.220 0.780 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.580 -18.328 6.166 20.770 hybrid contribution -0.654 0.800 -0.725 1.262 sum 6.926 -17.528 5.441 19.617 Atomic orbital electron populations 1.21790 0.94451 1.01871 1.02669 1.20427 0.96349 0.91351 1.03175 1.20800 1.02749 0.98276 0.93746 1.22474 0.93425 0.89067 0.97576 1.67238 1.13590 1.09641 1.31615 1.19089 0.90785 0.86895 0.86418 1.84592 1.36216 1.12273 1.95411 1.21364 1.04587 0.96144 0.95594 1.17887 0.81026 0.86550 0.82357 1.91210 1.45518 1.17859 1.75648 1.47751 1.44970 1.25231 1.15920 1.21929 0.95618 0.84573 0.99590 1.22572 1.02075 0.97975 0.95989 1.21890 0.98478 1.01324 0.94777 1.21469 0.95967 0.98885 0.98894 1.22214 0.98941 0.95717 1.00412 1.20804 0.89534 0.88837 0.95564 0.92940 1.42346 1.36565 1.05251 1.50148 1.19096 1.12339 0.85924 1.18227 0.91939 1.24574 0.99002 0.97152 0.99520 1.69698 1.21414 1.32935 1.32934 0.86299 0.76767 0.86687 0.77495 1.20930 1.22399 1.22286 1.22721 1.00176 0.97186 0.83164 1.21673 0.93708 0.91951 0.98833 0.92414 0.92259 0.92204 0.90708 0.90621 0.82455 0.72743 0.90748 0.91132 0.90247 0.91720 0.92665 0.90763 0.92803 0.92035 0.91259 0.92307 0.77955 0.94303 0.91381 0.91292 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.80 16 2 C -0.07 -0.56 6.08 -27.88 -0.17 -0.73 16 3 C -0.15 -1.64 5.14 -104.54 -0.54 -2.18 16 4 C 0.13 1.55 10.84 -17.49 -0.19 1.36 16 5 N -0.50 -7.61 10.37 -12.98 -0.13 -7.75 16 6 C 0.35 5.81 7.76 -16.61 -0.13 5.68 16 7 O -0.48 -8.31 12.78 -20.40 -0.26 -8.58 16 8 C -0.17 -2.75 4.52 -104.69 -0.47 -3.23 16 9 C 0.54 10.24 5.88 -12.47 -0.07 10.17 16 10 O -0.43 -10.61 13.36 2.87 0.04 -10.58 16 11 N -0.60 -9.63 1.71 -174.14 -0.30 -9.93 16 12 C 0.11 1.26 5.26 -3.39 -0.02 1.24 16 13 C -0.15 -1.48 5.20 -26.15 -0.14 -1.62 16 14 C -0.13 -1.32 5.48 -26.75 -0.15 -1.47 16 15 C -0.11 -1.39 5.67 -26.94 -0.15 -1.54 16 16 C -0.13 -2.15 4.92 -26.44 -0.13 -2.28 16 17 C 0.16 3.19 2.68 -67.49 -0.18 3.01 16 18 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 19 N -0.70 -17.75 3.05 -53.00 -0.16 -17.91 16 20 C -0.22 -6.37 9.81 -15.06 -0.15 -6.52 16 21 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -28.83 13.06 55.49 0.72 -28.10 16 24 Si 0.89 23.43 29.55 -169.99 -5.02 18.40 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 28 C 0.09 1.61 4.92 -4.06 -0.02 1.59 16 29 C -0.04 -0.46 7.71 -38.89 -0.30 -0.76 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.41 6.30 9.06 45.56 0.41 6.72 16 37 H 0.07 0.87 5.67 -51.93 -0.29 0.57 16 38 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 39 H 0.08 0.88 3.57 -51.93 -0.19 0.69 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.82 4.49 -51.93 -0.23 0.58 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.75 7.85 -51.93 -0.41 0.35 16 45 H 0.07 1.09 3.47 -51.93 -0.18 0.91 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.39 10.72 6.57 -40.82 -0.27 10.45 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.97 5.07 -51.93 -0.26 0.71 16 50 H 0.07 1.46 8.00 -51.93 -0.42 1.05 16 51 H 0.14 1.64 5.41 -52.49 -0.28 1.36 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -35.13 384.81 -8.56 -43.68 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.71 Total: 13.30 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.53 Total: 1.65 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.13 Total: -63.69 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.22 Total: -19.15 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.13 -8.56 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.859 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds