Wall clock time and date at job start Wed Apr 1 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47052 * 2 1 4 4 C 1.38359 * 120.26848 * 89.99843 * 3 2 1 5 5 N 1.31872 * 121.18748 * 179.97438 * 4 3 2 6 6 C 1.32241 * 121.80084 * 0.02562 * 5 4 3 7 7 O 1.35431 * 119.79999 * 180.02562 * 6 5 4 8 8 C 1.40271 * 120.39883 * 359.97438 * 6 5 4 9 9 C 1.47529 * 120.59762 * 179.97438 * 8 6 5 10 10 O 1.21589 * 119.99612 * 305.65431 * 9 8 6 11 11 N 1.34776 * 119.99928 * 125.65728 * 9 8 6 12 12 C 1.47093 * 120.15678 * 354.01457 * 11 9 8 13 13 C 1.53634 * 107.40142 * 107.90009 * 12 11 9 14 14 C 1.53485 * 108.44277 * 69.80848 * 13 12 11 15 15 C 1.52463 * 109.15210 * 245.77939 * 14 13 12 16 16 C 1.53124 * 109.66624 * 43.92887 * 15 14 13 17 17 C 1.53429 * 109.34377 * 77.05219 * 16 15 14 18 18 H 1.08999 * 109.63710 * 47.36403 * 17 16 15 19 19 N 1.46502 * 109.63162 * 167.95709 * 17 16 15 20 20 C 1.36937 * 120.00292 * 204.00658 * 19 17 16 21 21 H 1.08007 * 119.99728 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00424 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99746 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00157 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47190 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47459 * 120.00203 * 24 22 20 27 27 H 1.48501 * 109.47288 * 240.00007 * 24 22 20 28 28 C 1.46064 * 120.17590 * 174.28883 * 11 9 8 29 29 C 1.38333 * 120.27602 * 270.26485 * 3 2 1 30 30 H 1.09004 * 109.47514 * 299.99349 * 1 2 3 31 31 H 1.09000 * 109.47740 * 59.99804 * 1 2 3 32 32 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47273 * 240.00731 * 2 1 3 34 34 H 1.08993 * 109.47339 * 120.00711 * 2 1 3 35 35 H 1.08001 * 119.40744 * 0.03152 * 4 3 2 36 36 H 0.96695 * 114.00091 * 269.97659 * 7 6 5 37 37 H 1.09002 * 109.88129 * 348.45195 * 12 11 9 38 38 H 1.09002 * 109.93436 * 227.38123 * 12 11 9 39 39 H 1.08999 * 109.63991 * 310.12007 * 13 12 11 40 40 H 1.08998 * 109.63958 * 189.49304 * 13 12 11 41 41 H 1.09000 * 109.52370 * 125.88470 * 14 13 12 42 42 H 1.08994 * 109.53060 * 5.68517 * 14 13 12 43 43 H 1.08996 * 109.43713 * 283.87424 * 15 14 13 44 44 H 1.09002 * 109.43983 * 163.98907 * 15 14 13 45 45 H 1.09002 * 109.49453 * 317.09186 * 16 15 14 46 46 H 1.09000 * 109.51592 * 197.02240 * 16 15 14 47 47 H 0.96996 * 120.00206 * 24.00502 * 19 17 16 48 48 H 0.97007 * 119.99783 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.36196 * 172.82923 * 28 11 9 50 50 H 1.09000 * 109.36111 * 53.09844 * 28 11 9 51 51 H 1.08002 * 120.82202 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2647 2.0784 1.1950 5 7 2.7047 3.3213 1.2161 6 6 2.9430 3.9953 0.1035 7 8 3.3948 5.2701 0.1725 8 6 2.7316 3.3973 -1.1476 9 6 2.9955 4.1452 -2.3916 10 8 2.4698 5.2263 -2.5740 11 7 3.8193 3.6301 -3.3257 12 6 4.5591 2.3881 -3.0545 13 6 3.9191 1.2777 -3.9018 14 6 4.2440 1.5450 -5.3779 15 6 2.9534 1.8640 -6.1243 16 6 2.1020 2.8276 -5.2930 17 6 2.6784 4.2448 -5.4094 18 1 2.8778 4.4743 -6.4561 19 7 1.7225 5.2113 -4.8631 20 6 1.7578 6.5168 -5.2748 21 1 2.4907 6.8341 -6.0019 22 6 0.8518 7.4325 -4.7576 23 7 -0.0417 7.0458 -3.8719 24 14 0.8996 9.2133 -5.3198 25 1 1.9886 9.3894 -6.3139 26 1 -0.4008 9.5715 -5.9407 27 1 1.1496 10.0948 -4.1511 28 6 3.9864 4.3055 -4.6100 29 6 2.2595 2.0802 -1.1946 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8898 35 1 2.0834 1.5641 2.1272 36 1 2.6934 5.9354 0.1926 37 1 4.4848 2.1357 -1.9967 38 1 5.6056 2.5103 -3.3341 39 1 2.8387 1.2835 -3.7575 40 1 4.3261 0.3108 -3.6063 41 1 4.7082 0.6608 -5.8146 42 1 4.9270 2.3910 -5.4533 43 1 2.3962 0.9429 -6.2953 44 1 3.1930 2.3256 -7.0822 45 1 2.1135 2.5150 -4.2488 46 1 1.0770 2.8204 -5.6636 47 1 1.0645 4.9265 -4.2098 48 1 -0.6746 7.6858 -3.5102 49 1 4.7787 3.8152 -5.1757 50 1 4.2568 5.3473 -4.4379 51 1 2.0818 1.5894 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088406102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:22 Heat of formation + Delta-G solvation = -23.796295 kcal Electronic energy + Delta-G solvation = -33486.725391 eV Core-core repulsion = 29386.846726 eV Total energy + Delta-G solvation = -4099.878665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13656 -40.80589 -38.67436 -38.16143 -36.43684 -35.17272 -34.93901 -33.79285 -33.07743 -31.08457 -30.06701 -28.39691 -27.84398 -25.86379 -25.17629 -24.97616 -24.12236 -22.87008 -21.78818 -21.09426 -19.91060 -19.47984 -18.97491 -18.29271 -17.98346 -17.11119 -16.81209 -16.79235 -16.53774 -15.86386 -15.65853 -15.58066 -15.17208 -14.80945 -14.75239 -14.69088 -14.58328 -14.37114 -14.01625 -13.74869 -13.42218 -13.22700 -13.07448 -13.07035 -12.98053 -12.87254 -12.78650 -12.60457 -12.27840 -12.23452 -11.94482 -11.82221 -11.77522 -11.70101 -11.45762 -11.20998 -10.96479 -10.93531 -10.75232 -10.70739 -10.25866 -9.74124 -9.50679 -8.61064 -7.75615 -4.97572 -0.27528 0.07239 1.42663 1.45138 1.52924 1.91553 2.16484 2.42779 2.63435 2.80294 3.42696 3.55785 3.71916 3.76912 3.82758 3.86609 3.99681 4.07017 4.16999 4.22574 4.28444 4.30750 4.32994 4.47837 4.55246 4.56179 4.59861 4.67056 4.72136 4.77096 4.86209 4.89192 4.94931 4.98181 5.02578 5.13354 5.17335 5.20304 5.26858 5.37121 5.41242 5.46146 5.49475 5.53153 5.55749 5.60266 5.65505 5.89626 6.40841 6.42279 6.61692 6.81909 7.48837 7.54977 8.35161 8.54720 9.47978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004724 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.072371 B = 5925.155213 C = 7351.269660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.134 4.134 4 C 0.134 3.866 5 N -0.521 5.521 6 C 0.318 3.682 7 O -0.495 6.495 8 C -0.188 4.188 9 C 0.536 3.464 10 O -0.505 6.505 11 N -0.596 5.596 12 C 0.101 3.899 13 C -0.141 4.141 14 C -0.124 4.124 15 C -0.107 4.107 16 C -0.125 4.125 17 C 0.155 3.845 18 H 0.048 0.952 19 N -0.711 5.711 20 C -0.215 4.215 21 H 0.064 0.936 22 C -0.072 4.072 23 N -0.957 5.957 24 Si 0.955 3.045 25 H -0.269 1.269 26 H -0.296 1.296 27 H -0.305 1.305 28 C 0.104 3.896 29 C -0.033 4.033 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.197 0.803 36 H 0.412 0.588 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.370 0.630 48 H 0.238 0.762 49 H 0.110 0.890 50 H 0.022 0.978 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -23.920 5.493 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.024 4.024 5 N -0.239 5.239 6 C 0.140 3.860 7 O -0.304 6.304 8 C -0.194 4.194 9 C 0.321 3.679 10 O -0.378 6.378 11 N -0.330 5.330 12 C -0.021 4.021 13 C -0.178 4.178 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.163 4.163 17 C 0.045 3.955 18 H 0.066 0.934 19 N -0.350 5.350 20 C -0.348 4.348 21 H 0.082 0.918 22 C -0.264 4.264 23 N -0.609 5.609 24 Si 0.786 3.214 25 H -0.194 1.194 26 H -0.224 1.224 27 H -0.234 1.234 28 C -0.021 4.021 29 C -0.059 4.059 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.214 0.786 36 H 0.272 0.728 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.203 0.797 48 H 0.047 0.953 49 H 0.128 0.872 50 H 0.041 0.959 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.189 -22.917 6.017 25.413 hybrid contribution -1.072 2.012 -0.658 2.373 sum 8.117 -20.905 5.359 23.056 Atomic orbital electron populations 1.21805 0.94675 1.02877 1.01567 1.20556 0.95863 0.88906 1.05514 1.21195 1.00283 0.99748 0.92364 1.23234 0.91563 0.87955 0.99663 1.67261 1.14402 1.11255 1.30997 1.19250 0.92779 0.86669 0.87288 1.84545 1.36974 1.13290 1.95601 1.21162 1.06789 0.97570 0.93928 1.18402 0.80302 0.85906 0.83317 1.91173 1.48380 1.20917 1.77294 1.47812 1.44281 1.26298 1.14620 1.22264 0.96194 0.83038 1.00565 1.22520 1.01379 0.98651 0.95289 1.21869 0.97076 1.02299 0.94805 1.21428 0.96504 0.98377 0.98199 1.22122 0.98304 0.94317 1.01520 1.21111 0.89511 0.89765 0.95067 0.93402 1.42467 1.37512 1.05202 1.49812 1.19439 1.10976 0.87522 1.16822 0.91831 1.25265 0.99679 1.00826 1.00620 1.69875 1.22571 1.33560 1.34902 0.85327 0.76937 0.82271 0.76823 1.19378 1.22370 1.23363 1.22399 0.99984 0.95548 0.84170 1.21857 0.92995 0.90604 1.00456 0.92785 0.94206 0.90175 0.88956 0.87775 0.78616 0.72773 0.90346 0.89310 0.91254 0.88045 0.89643 0.91548 0.90798 0.92089 0.90937 0.94633 0.79736 0.95285 0.87233 0.95905 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.07 -0.72 6.08 29.85 0.18 -0.54 16 3 C -0.13 -2.47 5.14 -19.81 -0.10 -2.57 16 4 C 0.13 2.79 10.84 84.72 0.92 3.71 16 5 N -0.52 -15.62 10.37 -308.00 -3.19 -18.81 16 6 C 0.32 11.08 7.76 85.13 0.66 11.74 16 7 O -0.49 -18.80 12.78 -84.95 -1.09 -19.89 16 8 C -0.19 -6.21 4.52 -19.91 -0.09 -6.30 16 9 C 0.54 21.32 5.88 86.69 0.51 21.83 16 10 O -0.50 -26.58 13.36 -1.68 -0.02 -26.60 16 11 N -0.60 -19.03 1.71 -823.11 -1.41 -20.43 16 12 C 0.10 2.12 5.26 86.48 0.46 2.57 16 13 C -0.14 -2.19 5.20 30.97 0.16 -2.03 16 14 C -0.12 -2.00 5.48 30.58 0.17 -1.83 16 15 C -0.11 -2.27 5.67 30.46 0.17 -2.10 16 16 C -0.12 -3.91 4.92 30.78 0.15 -3.76 16 17 C 0.16 6.16 2.68 45.28 0.12 6.28 16 18 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 19 N -0.71 -37.79 3.05 -321.59 -0.98 -38.77 16 20 C -0.21 -12.76 9.81 84.03 0.82 -11.94 16 21 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.96 -63.27 13.06 21.65 0.28 -62.99 16 24 Si 0.95 50.32 29.55 68.60 2.03 52.34 16 25 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 27 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 28 C 0.10 3.68 4.92 86.60 0.43 4.11 16 29 C -0.03 -0.81 7.71 22.72 0.18 -0.63 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 35 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.41 14.42 9.06 -74.06 -0.67 13.75 16 37 H 0.08 1.63 5.67 -2.39 -0.01 1.62 16 38 H 0.09 1.58 7.97 -2.39 -0.02 1.56 16 39 H 0.07 1.27 3.57 -2.39 -0.01 1.27 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.18 4.49 -2.39 -0.01 1.17 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 45 H 0.07 2.23 3.47 -2.39 -0.01 2.22 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.37 21.89 6.57 -92.71 -0.61 21.28 16 48 H 0.24 15.44 8.31 -92.70 -0.77 14.67 16 49 H 0.11 2.94 5.07 -2.39 -0.01 2.93 16 50 H 0.02 1.01 8.00 -2.39 -0.02 0.99 16 51 H 0.15 3.23 5.41 -2.91 -0.02 3.22 16 Total: -1.00 -84.39 384.81 1.23 -83.16 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.30 Total: 38.57 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.91 Total: 13.42 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -5.30 Total: -141.00 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -1.11 Total: -46.49 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.03 Total: 52.34 kcal Total: -84.39 1.23 -83.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.362 kcal (2) G-P(sol) polarization free energy of solvation -84.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds