Wall clock time and date at job start Wed Apr 1 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.46920 * 2 1 4 4 O 1.33488 * 126.82949 * 270.10708 * 3 2 1 5 5 N 1.20657 * 113.15595 * 180.30633 * 4 3 2 6 6 C 1.30009 * 112.29959 * 359.74756 * 5 4 3 7 7 C 1.50708 * 127.33154 * 180.02562 * 6 5 4 8 8 C 1.37358 * 126.82543 * 89.99919 * 3 2 1 9 9 C 1.47396 * 128.57007 * 359.97438 * 8 3 2 10 10 O 1.21609 * 119.99832 * 269.70006 * 9 8 3 11 11 N 1.34769 * 120.00238 * 89.69597 * 9 8 3 12 12 C 1.46500 * 120.00237 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.53433 * 111.21896 * 298.98449 * 13 12 11 15 15 C 1.53648 * 107.15705 * 242.10501 * 14 13 12 16 16 C 1.53892 * 105.87178 * 339.99978 * 15 14 13 17 17 C 1.53743 * 105.45436 * 28.28388 * 16 15 14 18 18 H 1.09007 * 110.52488 * 94.80489 * 17 16 15 19 19 N 1.46971 * 110.07556 * 218.82465 * 17 16 15 20 20 C 1.36940 * 126.36268 * 267.86849 * 19 17 16 21 21 H 1.08000 * 119.99612 * 359.97438 * 20 19 17 22 22 C 1.38805 * 120.00208 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00316 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46892 * 89.99759 * 24 22 20 26 26 H 1.48495 * 109.47077 * 209.99711 * 24 22 20 27 27 H 1.48499 * 109.46915 * 330.00072 * 24 22 20 28 28 C 1.47109 * 107.27380 * 87.86807 * 19 17 16 29 29 C 1.53897 * 111.24054 * 61.21478 * 13 12 11 30 30 H 1.09002 * 109.46826 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47342 * 299.99738 * 1 2 3 33 33 H 1.09002 * 109.47065 * 239.99894 * 2 1 3 34 34 H 1.09002 * 109.46826 * 119.99829 * 2 1 3 35 35 H 1.09001 * 109.47158 * 270.00234 * 7 6 5 36 36 H 1.08997 * 109.46882 * 29.99820 * 7 6 5 37 37 H 1.09001 * 109.46884 * 150.00513 * 7 6 5 38 38 H 0.97010 * 119.99854 * 0.02562 * 11 9 8 39 39 H 1.08993 * 109.47452 * 60.00368 * 12 11 9 40 40 H 1.09000 * 109.47175 * 300.00158 * 12 11 9 41 41 H 1.09002 * 109.89983 * 1.48787 * 14 13 12 42 42 H 1.09001 * 109.89983 * 122.72258 * 14 13 12 43 43 H 1.08997 * 110.17271 * 99.10192 * 15 14 13 44 44 H 1.09007 * 110.17076 * 220.82483 * 15 14 13 45 45 H 1.08997 * 110.25431 * 147.27994 * 16 15 14 46 46 H 1.09001 * 110.24802 * 269.29360 * 16 15 14 47 47 H 0.97000 * 119.99331 * 179.97438 * 23 22 20 48 48 H 1.09008 * 110.08537 * 148.90722 * 28 19 17 49 49 H 1.09002 * 110.08319 * 270.41670 * 28 19 17 50 50 H 1.08999 * 110.24485 * 243.80817 * 29 13 12 51 51 H 1.08997 * 110.24463 * 5.80105 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2972 2.1760 -1.0685 5 7 2.6940 3.2791 -0.7833 6 6 2.7610 3.4623 0.5021 7 6 3.2082 4.7062 1.2260 8 6 2.3068 2.1971 1.0995 9 6 2.1824 1.8469 2.5258 10 8 1.1400 2.0588 3.1153 11 7 3.2237 1.2917 3.1767 12 6 3.0999 0.9431 4.5942 13 6 4.4146 0.3344 5.0864 14 6 4.7551 -0.9485 4.3166 15 6 4.7774 -2.0970 5.3370 16 6 4.9596 -1.4335 6.7136 17 6 4.3352 -0.0349 6.5801 18 1 3.3018 -0.0430 6.9268 19 7 5.1474 0.9516 7.3063 20 6 4.9743 1.3471 8.6058 21 1 4.1770 0.9226 9.1978 22 6 5.8231 2.2942 9.1620 23 7 6.7945 2.8119 8.4403 24 14 5.5866 2.8342 10.9345 25 1 6.3835 1.9573 11.8296 26 1 6.0389 4.2402 11.0881 27 1 4.1495 2.7343 11.2949 28 6 6.1808 1.4351 6.3776 29 6 5.5766 1.3345 4.9529 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2833 4.6589 1.3995 36 1 2.9762 5.5822 0.6203 37 1 2.6887 4.7771 2.1815 38 1 4.0553 1.1229 2.7066 39 1 2.2943 0.2202 4.7216 40 1 2.8772 1.8408 5.1711 41 1 3.9947 -1.1396 3.5594 42 1 5.7337 -0.8505 3.8468 43 1 3.8361 -2.6457 5.3059 44 1 5.6105 -2.7685 5.1290 45 1 4.4395 -2.0071 7.4807 46 1 6.0192 -1.3520 6.9558 47 1 7.3874 3.4740 8.8289 48 1 6.4351 2.4701 6.6065 49 1 7.0694 0.8076 6.4467 50 1 6.3168 0.9604 4.2457 51 1 5.2027 2.3061 4.6300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094575765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:50 Heat of formation + Delta-G solvation = 31.760298 kcal Electronic energy + Delta-G solvation = -31886.211089 eV Core-core repulsion = 27788.741538 eV Total energy + Delta-G solvation = -4097.469550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.05594 -40.07752 -38.91352 -35.09869 -34.82671 -34.70507 -33.96086 -31.68920 -30.80319 -30.24162 -28.98876 -28.12581 -26.91412 -25.42254 -24.20904 -23.83330 -23.37088 -21.04393 -20.49571 -20.09782 -19.60367 -18.63062 -17.96820 -17.73487 -17.02620 -16.51798 -15.75315 -15.47613 -15.17170 -14.72024 -14.63105 -14.32880 -14.06530 -13.66122 -13.59535 -13.56668 -13.41047 -13.35218 -13.15802 -12.80769 -12.78615 -12.62851 -11.94908 -11.92074 -11.77756 -11.66010 -11.22502 -11.14631 -11.06533 -10.86881 -10.70980 -10.60457 -10.37585 -10.25217 -10.09368 -10.06126 -10.02904 -9.82515 -9.63481 -9.60416 -9.50697 -8.98897 -8.68753 -6.90936 -5.66690 -3.11616 1.09907 1.73596 2.35242 2.62552 3.23811 3.38214 3.43816 3.45316 3.93574 4.02093 4.45327 4.58786 4.60206 4.77488 4.84378 4.90224 4.93718 5.00656 5.02640 5.23295 5.31464 5.42374 5.44214 5.46700 5.48620 5.50555 5.56164 5.60741 5.68581 5.85547 5.85863 5.87332 5.94058 6.00886 6.05533 6.08810 6.11522 6.26805 6.33067 6.40240 6.46878 6.61279 6.64804 6.72744 6.85384 7.05150 7.45744 7.48060 7.61197 7.83552 8.03128 8.12143 8.38449 9.19369 9.80270 10.46151 11.34006 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002927 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.796250 B = 9564.971175 C =10531.139759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C 0.018 3.982 4 O 0.096 5.904 5 N -0.358 5.358 6 C 0.057 3.943 7 C -0.080 4.080 8 C -0.246 4.246 9 C 0.595 3.405 10 O -0.526 6.526 11 N -0.708 5.708 12 C 0.141 3.859 13 C -0.084 4.084 14 C -0.111 4.111 15 C -0.119 4.119 16 C -0.137 4.137 17 C 0.173 3.827 18 H 0.055 0.945 19 N -0.586 5.586 20 C -0.219 4.219 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.141 3.859 29 C -0.133 4.133 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.252 0.748 48 H 0.119 0.881 49 H 0.005 0.995 50 H 0.055 0.945 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -6.377 -18.013 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 C -0.046 4.046 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.105 4.105 7 C -0.138 4.138 8 C -0.253 4.253 9 C 0.379 3.621 10 O -0.402 6.402 11 N -0.359 5.359 12 C 0.019 3.981 13 C -0.086 4.086 14 C -0.149 4.149 15 C -0.157 4.157 16 C -0.177 4.177 17 C 0.063 3.937 18 H 0.074 0.926 19 N -0.307 5.307 20 C -0.347 4.347 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.016 3.984 29 C -0.172 4.172 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.136 0.864 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.222 -5.287 -18.421 20.480 hybrid contribution 0.351 -0.135 1.378 1.428 sum -6.870 -5.422 -17.044 19.159 Atomic orbital electron populations 1.21801 0.92814 1.03077 1.03291 1.20248 0.97311 0.85755 1.05071 1.24658 0.98598 0.96159 0.85181 1.84518 1.61471 1.17619 1.32949 1.73613 1.17517 0.98682 1.16629 1.24788 1.00012 0.96765 0.88939 1.20268 1.02511 0.91183 0.99827 1.21994 1.12540 0.95454 0.95292 1.16847 0.83879 0.77578 0.83812 1.90837 1.28520 1.53259 1.67615 1.46048 1.15381 1.62113 1.12365 1.21472 0.97256 1.00387 0.79034 1.21897 0.93983 0.95289 0.97386 1.22144 1.00803 0.94390 0.97536 1.21988 1.00558 0.97155 0.96007 1.22702 1.02179 0.97685 0.95161 1.21123 0.94998 0.89079 0.88485 0.92646 1.44425 1.32663 1.44159 1.09476 1.19092 1.11781 1.17881 0.85987 0.90393 1.24768 0.97753 0.99550 0.98521 1.69659 1.20039 1.32509 1.34721 0.86073 0.77579 0.77763 0.84112 1.21673 1.21682 1.20651 1.22029 0.89312 1.03433 0.83658 1.23011 0.95867 0.97287 1.01042 0.91952 0.90921 0.91477 0.88702 0.88358 0.89338 0.89939 0.89520 0.76375 0.91535 0.90601 0.92491 0.91822 0.92607 0.92572 0.92749 0.91343 0.93714 0.86374 0.97676 0.92659 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.05 -0.33 6.38 -27.88 -0.18 -0.51 16 3 C 0.02 0.18 6.80 -34.63 -0.24 -0.05 16 4 O 0.10 1.10 11.06 18.66 0.21 1.30 16 5 N -0.36 -4.56 12.01 34.78 0.42 -4.14 16 6 C 0.06 0.71 7.59 -79.76 -0.61 0.10 16 7 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16 8 C -0.25 -3.05 6.24 -102.90 -0.64 -3.69 16 9 C 0.60 8.37 7.60 -12.54 -0.10 8.28 16 10 O -0.53 -9.35 17.11 5.27 0.09 -9.26 16 11 N -0.71 -9.01 4.83 -61.39 -0.30 -9.30 16 12 C 0.14 2.11 4.23 -4.04 -0.02 2.10 16 13 C -0.08 -1.31 0.72 -153.26 -0.11 -1.42 16 14 C -0.11 -1.42 5.60 -26.17 -0.15 -1.57 16 15 C -0.12 -1.60 6.80 -25.93 -0.18 -1.77 16 16 C -0.14 -2.36 6.45 -25.88 -0.17 -2.52 16 17 C 0.17 3.31 3.39 -66.73 -0.23 3.08 16 18 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 19 N -0.59 -14.03 2.97 -162.47 -0.48 -14.51 16 20 C -0.22 -5.85 10.32 -15.06 -0.16 -6.01 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.01 10.06 55.49 0.56 -25.46 16 24 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.14 3.23 6.00 -2.61 -0.02 3.22 16 29 C -0.13 -2.31 5.81 -25.17 -0.15 -2.45 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 4.40 7.80 -40.82 -0.32 4.08 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 42 H 0.06 0.79 7.01 -51.93 -0.36 0.42 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.12 3.12 5.51 -51.92 -0.29 2.83 16 49 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 50 H 0.05 0.84 7.04 -51.93 -0.37 0.48 16 51 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -31.10 407.07 -9.06 -40.16 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.40 Total: 3.19 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.27 Total: -4.79 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.20 Total: -53.42 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.30 Total: -7.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.10 -9.06 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094575765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.922 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds