Wall clock time and date at job start Wed Apr 1 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.46920 * 2 1 4 4 O 1.33488 * 126.82949 * 270.10708 * 3 2 1 5 5 N 1.20657 * 113.15595 * 180.30633 * 4 3 2 6 6 C 1.30009 * 112.29959 * 359.74756 * 5 4 3 7 7 C 1.50708 * 127.33154 * 180.02562 * 6 5 4 8 8 C 1.37358 * 126.82543 * 89.99919 * 3 2 1 9 9 C 1.47396 * 128.57007 * 359.97438 * 8 3 2 10 10 O 1.21609 * 119.99832 * 269.70006 * 9 8 3 11 11 N 1.34769 * 120.00238 * 89.69597 * 9 8 3 12 12 C 1.46500 * 120.00237 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.53433 * 111.21896 * 298.98449 * 13 12 11 15 15 C 1.53648 * 107.15705 * 242.10501 * 14 13 12 16 16 C 1.53892 * 105.87178 * 339.99978 * 15 14 13 17 17 C 1.53743 * 105.45436 * 28.28388 * 16 15 14 18 18 H 1.09007 * 110.52488 * 94.80489 * 17 16 15 19 19 N 1.46971 * 110.07556 * 218.82465 * 17 16 15 20 20 C 1.36940 * 126.36268 * 267.86849 * 19 17 16 21 21 H 1.08000 * 119.99612 * 359.97438 * 20 19 17 22 22 C 1.38805 * 120.00208 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00316 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46892 * 89.99759 * 24 22 20 26 26 H 1.48495 * 109.47077 * 209.99711 * 24 22 20 27 27 H 1.48499 * 109.46915 * 330.00072 * 24 22 20 28 28 C 1.47109 * 107.27380 * 87.86807 * 19 17 16 29 29 C 1.53897 * 111.24054 * 61.21478 * 13 12 11 30 30 H 1.09002 * 109.46826 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47342 * 299.99738 * 1 2 3 33 33 H 1.09002 * 109.47065 * 239.99894 * 2 1 3 34 34 H 1.09002 * 109.46826 * 119.99829 * 2 1 3 35 35 H 1.09001 * 109.47158 * 270.00234 * 7 6 5 36 36 H 1.08997 * 109.46882 * 29.99820 * 7 6 5 37 37 H 1.09001 * 109.46884 * 150.00513 * 7 6 5 38 38 H 0.97010 * 119.99854 * 0.02562 * 11 9 8 39 39 H 1.08993 * 109.47452 * 60.00368 * 12 11 9 40 40 H 1.09000 * 109.47175 * 300.00158 * 12 11 9 41 41 H 1.09002 * 109.89983 * 1.48787 * 14 13 12 42 42 H 1.09001 * 109.89983 * 122.72258 * 14 13 12 43 43 H 1.08997 * 110.17271 * 99.10192 * 15 14 13 44 44 H 1.09007 * 110.17076 * 220.82483 * 15 14 13 45 45 H 1.08997 * 110.25431 * 147.27994 * 16 15 14 46 46 H 1.09001 * 110.24802 * 269.29360 * 16 15 14 47 47 H 0.97000 * 119.99331 * 179.97438 * 23 22 20 48 48 H 1.09008 * 110.08537 * 148.90722 * 28 19 17 49 49 H 1.09002 * 110.08319 * 270.41670 * 28 19 17 50 50 H 1.08999 * 110.24485 * 243.80817 * 29 13 12 51 51 H 1.08997 * 110.24463 * 5.80105 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2972 2.1760 -1.0685 5 7 2.6940 3.2791 -0.7833 6 6 2.7610 3.4623 0.5021 7 6 3.2082 4.7062 1.2260 8 6 2.3068 2.1971 1.0995 9 6 2.1824 1.8469 2.5258 10 8 1.1400 2.0588 3.1153 11 7 3.2237 1.2917 3.1767 12 6 3.0999 0.9431 4.5942 13 6 4.4146 0.3344 5.0864 14 6 4.7551 -0.9485 4.3166 15 6 4.7774 -2.0970 5.3370 16 6 4.9596 -1.4335 6.7136 17 6 4.3352 -0.0349 6.5801 18 1 3.3018 -0.0430 6.9268 19 7 5.1474 0.9516 7.3063 20 6 4.9743 1.3471 8.6058 21 1 4.1770 0.9226 9.1978 22 6 5.8231 2.2942 9.1620 23 7 6.7945 2.8119 8.4403 24 14 5.5866 2.8342 10.9345 25 1 6.3835 1.9573 11.8296 26 1 6.0389 4.2402 11.0881 27 1 4.1495 2.7343 11.2949 28 6 6.1808 1.4351 6.3776 29 6 5.5766 1.3345 4.9529 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2833 4.6589 1.3995 36 1 2.9762 5.5822 0.6203 37 1 2.6887 4.7771 2.1815 38 1 4.0553 1.1229 2.7066 39 1 2.2943 0.2202 4.7216 40 1 2.8772 1.8408 5.1711 41 1 3.9947 -1.1396 3.5594 42 1 5.7337 -0.8505 3.8468 43 1 3.8361 -2.6457 5.3059 44 1 5.6105 -2.7685 5.1290 45 1 4.4395 -2.0071 7.4807 46 1 6.0192 -1.3520 6.9558 47 1 7.3874 3.4740 8.8289 48 1 6.4351 2.4701 6.6065 49 1 7.0694 0.8076 6.4467 50 1 6.3168 0.9604 4.2457 51 1 5.2027 2.3061 4.6300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094575765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:49 Heat of formation + Delta-G solvation = 13.949777 kcal Electronic energy + Delta-G solvation = -31886.983411 eV Core-core repulsion = 27788.741538 eV Total energy + Delta-G solvation = -4098.241872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.96096 -41.37733 -40.20514 -36.34776 -35.83017 -35.59188 -35.37168 -33.35860 -32.14212 -31.32249 -29.90452 -29.45670 -28.52238 -26.53394 -25.64782 -24.97519 -24.40511 -22.24903 -21.98230 -21.15532 -20.81232 -19.86191 -19.11935 -18.88834 -18.61331 -17.48613 -17.04030 -16.81351 -16.45853 -16.12506 -15.64065 -15.51166 -15.24791 -15.09673 -14.94031 -14.53598 -14.36730 -14.35805 -14.17686 -14.03175 -13.86367 -13.62805 -13.46733 -13.33498 -12.83602 -12.77336 -12.58139 -12.52974 -12.49260 -12.17128 -12.04393 -11.87345 -11.83733 -11.65212 -11.59987 -11.48004 -11.37302 -11.22005 -10.98412 -10.96675 -10.69216 -10.48550 -10.18269 -8.86215 -7.72601 -5.18757 0.25473 0.80649 1.26156 1.46285 1.47063 1.55639 1.74388 2.21820 2.50093 3.05867 3.19751 3.31978 3.53868 3.67051 3.70708 3.78215 3.85163 3.98980 4.12058 4.23947 4.28959 4.31990 4.39686 4.46780 4.48364 4.53382 4.58293 4.63825 4.66176 4.68926 4.77766 4.81325 4.87802 4.96687 4.98862 5.03246 5.05455 5.09462 5.14212 5.19710 5.27244 5.31327 5.36044 5.43510 5.51547 5.52690 5.62382 5.69218 5.90174 6.39696 6.40964 7.04429 7.15035 7.15954 7.83717 8.48841 9.25590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002927 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.796250 B = 9564.971175 C =10531.139759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.040 3.960 4 O 0.097 5.903 5 N -0.374 5.374 6 C 0.049 3.951 7 C -0.081 4.081 8 C -0.272 4.272 9 C 0.605 3.395 10 O -0.568 6.568 11 N -0.693 5.693 12 C 0.153 3.847 13 C -0.070 4.070 14 C -0.104 4.104 15 C -0.109 4.109 16 C -0.133 4.133 17 C 0.159 3.841 18 H 0.048 0.952 19 N -0.608 5.608 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.143 3.857 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.038 0.962 47 H 0.245 0.755 48 H 0.081 0.919 49 H -0.019 1.019 50 H 0.085 0.915 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -8.601 -20.396 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.024 4.024 4 O 0.037 5.963 5 N -0.082 5.082 6 C -0.113 4.113 7 C -0.138 4.138 8 C -0.279 4.279 9 C 0.390 3.610 10 O -0.447 6.447 11 N -0.344 5.344 12 C 0.030 3.970 13 C -0.072 4.072 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.173 4.173 17 C 0.051 3.949 18 H 0.066 0.934 19 N -0.329 5.329 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.259 4.259 23 N -0.596 5.596 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.197 1.197 28 C 0.018 3.982 29 C -0.158 4.158 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.099 0.901 49 H -0.001 1.001 50 H 0.104 0.896 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.902 -7.551 -20.843 23.535 hybrid contribution 0.527 0.525 2.131 2.257 sum -7.376 -7.026 -18.712 21.305 Atomic orbital electron populations 1.21792 0.92801 1.04184 1.02018 1.20520 0.97118 0.83782 1.07067 1.25240 0.96148 0.96935 0.84114 1.84503 1.61257 1.17418 1.33164 1.73607 1.18441 0.99399 1.16727 1.25085 0.99849 0.97295 0.89047 1.20328 1.03083 0.91104 0.99325 1.21832 1.15033 0.96325 0.94708 1.16955 0.83190 0.76592 0.84281 1.90820 1.30219 1.54928 1.68710 1.45827 1.15718 1.61524 1.11291 1.21187 0.97070 0.98987 0.79795 1.21739 0.93440 0.96499 0.95495 1.22136 1.02579 0.91866 0.97544 1.21955 1.02421 0.97384 0.92976 1.22556 0.99863 0.96770 0.98131 1.21433 0.94026 0.89236 0.90215 0.93372 1.44644 1.33552 1.45582 1.09157 1.19416 1.11343 1.17430 0.87557 0.90402 1.25521 0.98049 1.00237 1.02091 1.69931 1.20823 1.33037 1.35854 0.85138 0.77761 0.76794 0.80040 1.21549 1.22164 1.19668 1.21789 0.89082 1.00489 0.86864 1.22862 0.96951 0.98153 0.97806 0.91751 0.88652 0.94219 0.85554 0.87450 0.88157 0.88809 0.90541 0.74845 0.90644 0.94095 0.89453 0.90453 0.90481 0.90900 0.92771 0.94321 0.94502 0.90142 1.00124 0.89622 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 71.98 0.71 -1.06 16 2 C -0.05 -0.51 6.38 29.85 0.19 -0.32 16 3 C 0.04 0.73 6.80 25.48 0.17 0.90 16 4 O 0.10 2.01 11.06 77.03 0.85 2.87 16 5 N -0.37 -9.00 12.01 -44.79 -0.54 -9.54 16 6 C 0.05 1.16 7.59 45.16 0.34 1.51 16 7 C -0.08 -1.62 10.49 71.24 0.75 -0.87 16 8 C -0.27 -6.33 6.24 -18.75 -0.12 -6.44 16 9 C 0.60 16.30 7.60 86.66 0.66 16.96 16 10 O -0.57 -20.11 17.11 -4.06 -0.07 -20.18 16 11 N -0.69 -16.18 4.83 -466.41 -2.25 -18.44 16 12 C 0.15 4.39 4.23 86.38 0.37 4.75 16 13 C -0.07 -2.07 0.72 -51.37 -0.04 -2.10 16 14 C -0.10 -2.22 5.60 30.96 0.17 -2.04 16 15 C -0.11 -2.52 6.80 31.11 0.21 -2.31 16 16 C -0.13 -4.45 6.45 31.15 0.20 -4.25 16 17 C 0.16 6.05 3.39 45.51 0.15 6.21 16 18 H 0.05 1.88 7.85 -2.38 -0.02 1.86 16 19 N -0.61 -30.00 2.97 -667.93 -1.98 -31.99 16 20 C -0.23 -12.60 10.32 84.03 0.87 -11.73 16 21 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 23 N -0.95 -55.84 10.06 21.65 0.22 -55.63 16 24 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.14 6.79 6.00 86.97 0.52 7.32 16 29 C -0.12 -4.02 5.81 31.61 0.18 -3.83 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 1.03 8.11 -2.39 -0.02 1.01 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 7.72 7.80 -92.70 -0.72 7.00 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.42 7.46 -2.39 -0.02 1.40 16 42 H 0.08 1.52 7.01 -2.39 -0.02 1.50 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.51 7.94 -2.39 -0.02 1.49 16 47 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 48 H 0.08 4.47 5.51 -2.38 -0.01 4.46 16 49 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 50 H 0.09 2.38 7.04 -2.39 -0.02 2.37 16 51 H 0.05 1.84 7.65 -2.39 -0.02 1.82 16 Total: -1.00 -72.13 407.07 4.28 -67.85 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.21 Total: 17.80 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.81 Total: -0.62 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -4.56 Total: -115.59 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.78 Total: -17.31 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.13 4.28 -67.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094575765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.800 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds