Wall clock time and date at job start Wed Apr 1 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47167 * 2 1 4 4 N 1.30181 * 126.80296 * 270.16343 * 3 2 1 5 5 O 1.20923 * 111.60494 * 180.25460 * 4 3 2 6 6 C 1.34045 * 111.56450 * 359.74399 * 5 4 3 7 7 C 1.50705 * 126.77115 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47044 * 269.99808 * 7 6 5 9 9 C 1.35447 * 106.44941 * 0.02562 * 6 5 4 10 10 C 1.50698 * 128.00576 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46750 * 90.00730 * 10 9 6 12 12 O 1.21280 * 120.00379 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99908 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.55913 * 36.44164 * 14 13 11 16 16 C 1.54851 * 110.62593 * 273.53913 * 14 13 11 17 17 C 1.55842 * 103.44519 * 241.35304 * 16 14 13 18 18 H 1.09010 * 115.55731 * 158.81244 * 17 16 14 19 19 C 1.55846 * 105.74295 * 287.98669 * 17 16 14 20 20 C 1.55482 * 103.32267 * 71.92557 * 19 17 16 21 21 C 1.55848 * 103.32807 * 0.02562 * 20 19 17 22 22 H 1.08997 * 116.12758 * 159.23000 * 21 20 19 23 23 N 1.50232 * 101.05242 * 32.94045 * 17 16 14 24 24 C 1.36943 * 130.84102 * 125.28027 * 23 17 16 25 25 H 1.08002 * 119.99788 * 180.02562 * 24 23 17 26 26 C 1.38811 * 119.99622 * 0.30184 * 24 23 17 27 27 N 1.31614 * 120.00467 * 359.72375 * 26 24 23 28 28 Si 1.86801 * 119.99700 * 179.72266 * 26 24 23 29 29 H 1.48496 * 109.47031 * 59.99836 * 28 26 24 30 30 H 1.48497 * 109.47267 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.47169 * 300.00118 * 28 26 24 32 32 H 1.09004 * 109.46953 * 59.99736 * 1 2 3 33 33 H 1.08993 * 109.47291 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47175 * 300.00276 * 1 2 3 35 35 H 1.08998 * 109.47590 * 239.99653 * 2 1 3 36 36 H 1.09005 * 109.47049 * 119.99482 * 2 1 3 37 37 H 1.08995 * 109.47011 * 30.00289 * 7 6 5 38 38 H 1.09005 * 109.46574 * 150.00309 * 7 6 5 39 39 H 1.08997 * 109.47053 * 60.00119 * 8 7 6 40 40 H 1.09004 * 109.47126 * 180.02562 * 8 7 6 41 41 H 1.09004 * 109.46947 * 300.00503 * 8 7 6 42 42 H 1.08992 * 109.47681 * 330.00320 * 10 9 6 43 43 H 1.09004 * 109.47452 * 209.99856 * 10 9 6 44 44 H 0.97003 * 120.00286 * 359.97438 * 13 11 10 45 45 H 1.08996 * 110.62669 * 122.86465 * 16 14 13 46 46 H 1.08997 * 110.62326 * 359.84278 * 16 14 13 47 47 H 1.08994 * 110.62828 * 190.50049 * 19 17 16 48 48 H 1.08993 * 110.62693 * 313.52387 * 19 17 16 49 49 H 1.08999 * 110.60935 * 241.58195 * 20 19 17 50 50 H 1.08997 * 110.89323 * 118.55025 * 20 19 17 51 51 H 0.96995 * 120.00147 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1571 -1.0424 5 8 2.6840 3.2553 -0.7254 6 6 2.7358 3.3947 0.6068 7 6 3.1752 4.6180 1.3695 8 6 4.6818 4.5452 1.6258 9 6 2.3152 2.2192 1.1321 10 6 2.1842 1.8467 2.5864 11 6 0.8030 2.2020 3.0734 12 8 0.0039 2.7083 2.3144 13 7 0.4561 1.9581 4.3527 14 6 -0.8864 2.3040 4.8263 15 1 -1.6254 2.1272 4.0448 16 6 -0.9350 3.7775 5.2998 17 6 -1.3147 3.6616 6.8068 18 1 -1.0608 4.5239 7.4235 19 6 -2.8129 3.2335 6.8337 20 6 -2.7707 1.7520 6.3636 21 6 -1.2529 1.4954 6.1203 22 1 -0.9357 0.4526 6.1242 23 7 -0.6397 2.3710 7.1754 24 6 0.2617 2.0826 8.1652 25 1 0.6408 1.0772 8.2741 26 6 0.6838 3.0814 9.0319 27 7 0.2219 4.3066 8.8991 28 14 1.9075 2.6863 10.3869 29 1 3.1662 2.1784 9.7845 30 1 2.1944 3.9158 11.1687 31 1 1.3352 1.6507 11.2843 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.9484 5.5105 0.7865 38 1 2.6463 4.6618 2.3217 39 1 5.2106 4.5013 0.6738 40 1 4.9996 5.4298 2.1779 41 1 4.9084 3.6525 2.2089 42 1 2.9264 2.3918 3.1694 43 1 2.3460 0.7751 2.7031 44 1 1.0953 1.5535 4.9599 45 1 -1.6980 4.3315 4.7532 46 1 0.0405 4.2501 5.1848 47 1 -3.2152 3.3069 7.8440 48 1 -3.3978 3.8391 6.1415 49 1 -3.3348 1.6265 5.4395 50 1 -3.1527 1.0873 7.1385 51 1 0.5172 5.0045 9.5045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097237660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:09 Heat of formation + Delta-G solvation = 48.462022 kcal Electronic energy + Delta-G solvation = -31998.442629 eV Core-core repulsion = 27901.697320 eV Total energy + Delta-G solvation = -4096.745309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.88676 -39.78601 -38.43057 -35.78258 -34.98067 -33.76059 -32.56809 -31.95853 -30.69884 -29.25790 -29.13390 -28.52765 -27.22603 -24.66723 -24.25592 -23.78629 -22.33131 -21.13366 -19.91446 -19.84343 -19.63385 -18.67608 -17.59929 -17.03792 -17.00726 -16.57722 -15.81676 -15.44182 -14.88090 -14.79057 -14.43373 -14.23447 -14.02128 -13.92003 -13.78288 -13.47367 -13.07249 -12.90049 -12.77077 -12.59024 -12.38586 -12.09132 -11.88206 -11.77931 -11.57741 -11.46736 -11.32540 -11.18183 -11.14156 -10.98265 -10.92437 -10.76016 -10.53746 -10.40112 -10.15893 -9.97034 -9.92684 -9.69416 -9.33765 -9.22843 -9.03072 -8.98010 -8.46964 -6.99486 -5.78803 -3.18257 1.48851 2.19582 2.94324 3.08686 3.32123 3.37291 3.38898 3.67609 4.12271 4.35647 4.36383 4.69176 4.78290 4.92876 5.01153 5.04156 5.07949 5.16013 5.19890 5.28103 5.31566 5.35451 5.41372 5.59225 5.59738 5.66348 5.66941 5.71596 5.74172 5.81487 5.84306 5.95156 6.00463 6.02229 6.06059 6.10078 6.13026 6.21531 6.28189 6.39416 6.46256 6.57076 6.71740 6.79302 6.91712 7.10381 7.29928 7.42128 7.74908 7.97340 8.12957 8.31321 8.60906 9.02450 9.65973 10.47162 11.29870 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003212 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.565081 B = 8714.128856 C = 9800.030294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.036 3.964 4 N -0.370 5.370 5 O 0.094 5.906 6 C -0.015 4.015 7 C -0.044 4.044 8 C -0.149 4.149 9 C -0.172 4.172 10 C -0.066 4.066 11 C 0.510 3.490 12 O -0.542 6.542 13 N -0.705 5.705 14 C 0.130 3.870 15 H 0.075 0.925 16 C -0.140 4.140 17 C 0.153 3.847 18 H 0.152 0.848 19 C -0.138 4.138 20 C -0.126 4.126 21 C 0.126 3.874 22 H 0.087 0.913 23 N -0.591 5.591 24 C -0.216 4.216 25 H 0.077 0.923 26 C -0.008 4.008 27 N -0.919 5.919 28 Si 0.914 3.086 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.402 0.598 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.057 0.943 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -4.359 -13.120 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.123 4.123 4 N -0.076 5.076 5 O 0.031 5.969 6 C -0.078 4.078 7 C -0.083 4.083 8 C -0.207 4.207 9 C -0.176 4.176 10 C -0.107 4.107 11 C 0.295 3.705 12 O -0.419 6.419 13 N -0.355 5.355 14 C 0.023 3.977 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.046 3.954 18 H 0.169 0.831 19 C -0.177 4.177 20 C -0.166 4.166 21 C 0.018 3.982 22 H 0.105 0.895 23 N -0.312 5.312 24 C -0.344 4.344 25 H 0.095 0.905 26 C -0.204 4.204 27 N -0.567 5.567 28 Si 0.745 3.255 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.236 0.764 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.983 -4.098 -14.704 15.775 hybrid contribution 0.820 -0.475 1.787 2.023 sum 4.804 -4.574 -12.917 14.521 Atomic orbital electron populations 1.21716 0.93629 1.01888 1.03220 1.19915 0.96787 0.88197 1.03260 1.23314 1.01461 0.99062 0.88449 1.73779 1.17165 0.92720 1.23923 1.84763 1.62707 1.26984 1.22492 1.24169 1.01833 0.98203 0.83611 1.20131 0.97252 0.91912 0.98976 1.21781 0.93743 1.02870 1.02262 1.20191 1.07532 0.93972 0.95948 1.19932 0.96555 1.03779 0.90392 1.20320 0.88925 0.78935 0.82281 1.90685 1.52411 1.43516 1.55316 1.45971 1.16281 1.62682 1.10541 1.22771 0.82337 0.96652 0.95902 0.90714 1.23406 1.00601 0.94574 0.99450 1.23737 0.87535 0.92763 0.91320 0.83144 1.23150 1.00070 0.94949 0.99561 1.22947 0.96555 0.97816 0.99317 1.23344 0.92610 0.94147 0.88142 0.89535 1.46526 1.48108 1.04629 1.31925 1.18946 1.15560 0.94862 1.05015 0.90493 1.24688 1.00702 0.95509 0.99535 1.69450 1.46858 1.00778 1.39572 0.86164 0.80749 0.76932 0.81672 1.21284 1.21615 1.21300 0.92628 0.91982 0.91456 0.90375 0.89894 0.89336 0.88464 0.92198 0.91120 0.92111 0.87724 0.87896 0.76372 0.92996 0.92304 0.92582 0.93356 0.93061 0.92406 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.04 -0.48 6.44 -27.88 -0.18 -0.66 16 3 C 0.04 0.50 6.58 -82.10 -0.54 -0.04 16 4 N -0.37 -5.56 12.07 33.43 0.40 -5.16 16 5 O 0.09 1.34 11.20 17.16 0.19 1.54 16 6 C -0.01 -0.19 6.74 -35.30 -0.24 -0.43 16 7 C -0.04 -0.45 6.30 -27.88 -0.18 -0.63 16 8 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 9 C -0.17 -2.27 4.81 -104.42 -0.50 -2.77 16 10 C -0.07 -0.78 5.95 -29.04 -0.17 -0.95 16 11 C 0.51 7.79 7.82 -10.98 -0.09 7.70 16 12 O -0.54 -10.16 15.42 5.56 0.09 -10.08 16 13 N -0.71 -11.06 5.11 -50.82 -0.26 -11.32 16 14 C 0.13 2.30 2.76 -64.83 -0.18 2.12 16 15 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 16 C -0.14 -2.76 6.24 -24.24 -0.15 -2.91 16 17 C 0.15 3.36 4.67 -62.81 -0.29 3.07 16 18 H 0.15 3.83 5.52 -51.92 -0.29 3.54 16 19 C -0.14 -2.66 6.49 -23.89 -0.16 -2.81 16 20 C -0.13 -2.22 6.49 -23.89 -0.16 -2.37 16 21 C 0.13 2.33 5.09 -62.22 -0.32 2.02 16 22 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 23 N -0.59 -13.37 2.97 -145.20 -0.43 -13.80 16 24 C -0.22 -5.40 10.59 -15.06 -0.16 -5.56 16 25 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 27 N -0.92 -24.94 10.46 55.49 0.58 -24.36 16 28 Si 0.91 20.66 29.55 -169.99 -5.02 15.63 16 29 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.92 7.81 -51.93 -0.41 0.52 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 43 H 0.10 0.97 7.65 -51.93 -0.40 0.57 16 44 H 0.40 5.98 8.64 -40.82 -0.35 5.63 16 45 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 46 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 49 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -30.30 410.32 -9.41 -39.71 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.48 Total: 8.36 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.67 Total: -6.70 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.29 Total: -54.65 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.28 Total: -8.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.30 -9.41 -39.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097237660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.172 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds