Wall clock time and date at job start Wed Apr 1 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47167 * 2 1 4 4 N 1.30181 * 126.80296 * 270.16343 * 3 2 1 5 5 O 1.20923 * 111.60494 * 180.25460 * 4 3 2 6 6 C 1.34045 * 111.56450 * 359.74399 * 5 4 3 7 7 C 1.50705 * 126.77115 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47044 * 269.99808 * 7 6 5 9 9 C 1.35447 * 106.44941 * 0.02562 * 6 5 4 10 10 C 1.50698 * 128.00576 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46750 * 90.00730 * 10 9 6 12 12 O 1.21280 * 120.00379 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99908 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.55913 * 36.44164 * 14 13 11 16 16 C 1.54851 * 110.62593 * 273.53913 * 14 13 11 17 17 C 1.55842 * 103.44519 * 241.35304 * 16 14 13 18 18 H 1.09010 * 115.55731 * 158.81244 * 17 16 14 19 19 C 1.55846 * 105.74295 * 287.98669 * 17 16 14 20 20 C 1.55482 * 103.32267 * 71.92557 * 19 17 16 21 21 C 1.55848 * 103.32807 * 0.02562 * 20 19 17 22 22 H 1.08997 * 116.12758 * 159.23000 * 21 20 19 23 23 N 1.50232 * 101.05242 * 32.94045 * 17 16 14 24 24 C 1.36943 * 130.84102 * 125.28027 * 23 17 16 25 25 H 1.08002 * 119.99788 * 180.02562 * 24 23 17 26 26 C 1.38811 * 119.99622 * 0.30184 * 24 23 17 27 27 N 1.31614 * 120.00467 * 359.72375 * 26 24 23 28 28 Si 1.86801 * 119.99700 * 179.72266 * 26 24 23 29 29 H 1.48496 * 109.47031 * 59.99836 * 28 26 24 30 30 H 1.48497 * 109.47267 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.47169 * 300.00118 * 28 26 24 32 32 H 1.09004 * 109.46953 * 59.99736 * 1 2 3 33 33 H 1.08993 * 109.47291 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47175 * 300.00276 * 1 2 3 35 35 H 1.08998 * 109.47590 * 239.99653 * 2 1 3 36 36 H 1.09005 * 109.47049 * 119.99482 * 2 1 3 37 37 H 1.08995 * 109.47011 * 30.00289 * 7 6 5 38 38 H 1.09005 * 109.46574 * 150.00309 * 7 6 5 39 39 H 1.08997 * 109.47053 * 60.00119 * 8 7 6 40 40 H 1.09004 * 109.47126 * 180.02562 * 8 7 6 41 41 H 1.09004 * 109.46947 * 300.00503 * 8 7 6 42 42 H 1.08992 * 109.47681 * 330.00320 * 10 9 6 43 43 H 1.09004 * 109.47452 * 209.99856 * 10 9 6 44 44 H 0.97003 * 120.00286 * 359.97438 * 13 11 10 45 45 H 1.08996 * 110.62669 * 122.86465 * 16 14 13 46 46 H 1.08997 * 110.62326 * 359.84278 * 16 14 13 47 47 H 1.08994 * 110.62828 * 190.50049 * 19 17 16 48 48 H 1.08993 * 110.62693 * 313.52387 * 19 17 16 49 49 H 1.08999 * 110.60935 * 241.58195 * 20 19 17 50 50 H 1.08997 * 110.89323 * 118.55025 * 20 19 17 51 51 H 0.96995 * 120.00147 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1571 -1.0424 5 8 2.6840 3.2553 -0.7254 6 6 2.7358 3.3947 0.6068 7 6 3.1752 4.6180 1.3695 8 6 4.6818 4.5452 1.6258 9 6 2.3152 2.2192 1.1321 10 6 2.1842 1.8467 2.5864 11 6 0.8030 2.2020 3.0734 12 8 0.0039 2.7083 2.3144 13 7 0.4561 1.9581 4.3527 14 6 -0.8864 2.3040 4.8263 15 1 -1.6254 2.1272 4.0448 16 6 -0.9350 3.7775 5.2998 17 6 -1.3147 3.6616 6.8068 18 1 -1.0608 4.5239 7.4235 19 6 -2.8129 3.2335 6.8337 20 6 -2.7707 1.7520 6.3636 21 6 -1.2529 1.4954 6.1203 22 1 -0.9357 0.4526 6.1242 23 7 -0.6397 2.3710 7.1754 24 6 0.2617 2.0826 8.1652 25 1 0.6408 1.0772 8.2741 26 6 0.6838 3.0814 9.0319 27 7 0.2219 4.3066 8.8991 28 14 1.9075 2.6863 10.3869 29 1 3.1662 2.1784 9.7845 30 1 2.1944 3.9158 11.1687 31 1 1.3352 1.6507 11.2843 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.9484 5.5105 0.7865 38 1 2.6463 4.6618 2.3217 39 1 5.2106 4.5013 0.6738 40 1 4.9996 5.4298 2.1779 41 1 4.9084 3.6525 2.2089 42 1 2.9264 2.3918 3.1694 43 1 2.3460 0.7751 2.7031 44 1 1.0953 1.5535 4.9599 45 1 -1.6980 4.3315 4.7532 46 1 0.0405 4.2501 5.1848 47 1 -3.2152 3.3069 7.8440 48 1 -3.3978 3.8391 6.1415 49 1 -3.3348 1.6265 5.4395 50 1 -3.1527 1.0873 7.1385 51 1 0.5172 5.0045 9.5045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097237660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:08 Heat of formation + Delta-G solvation = 32.294233 kcal Electronic energy + Delta-G solvation = -31999.143717 eV Core-core repulsion = 27901.697320 eV Total energy + Delta-G solvation = -4097.446397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.90616 -41.19613 -39.84516 -36.77362 -35.85174 -35.18899 -34.35181 -32.87121 -31.69003 -30.91956 -30.55068 -29.88715 -28.56516 -26.06261 -25.56867 -24.64081 -23.52008 -22.39998 -21.48498 -21.06944 -20.71205 -20.22648 -18.79151 -18.66170 -18.03282 -17.77948 -17.14675 -16.70796 -16.43440 -15.84564 -15.78778 -15.37275 -15.32374 -15.08173 -14.90795 -14.63218 -14.31948 -13.94148 -13.78153 -13.66006 -13.62971 -13.44776 -13.26045 -12.86484 -12.81901 -12.75337 -12.66682 -12.56863 -12.40742 -12.30256 -12.08190 -12.06574 -11.95956 -11.87284 -11.66380 -11.64730 -11.19673 -10.98681 -10.89836 -10.85232 -10.63660 -10.07487 -9.86163 -8.82806 -7.70916 -5.10826 0.48662 1.18374 1.53173 1.54709 1.60373 1.74915 2.13047 2.46570 2.54782 3.18896 3.41770 3.45056 3.49310 3.74868 3.88081 3.99639 4.06870 4.10915 4.13877 4.26387 4.29096 4.31166 4.32035 4.44573 4.45663 4.48621 4.52533 4.56847 4.66292 4.73806 4.76452 4.84721 4.86347 4.92696 4.94292 5.00121 5.02118 5.11005 5.12224 5.14933 5.20674 5.22315 5.29684 5.33971 5.40971 5.56398 5.64903 5.77706 5.93597 6.31161 6.73766 7.10103 7.29890 7.38988 7.77646 8.63327 9.36063 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003212 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.565081 B = 8714.128856 C = 9800.030294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.031 3.969 4 N -0.397 5.397 5 O 0.080 5.920 6 C -0.017 4.017 7 C -0.044 4.044 8 C -0.144 4.144 9 C -0.186 4.186 10 C -0.058 4.058 11 C 0.513 3.487 12 O -0.578 6.578 13 N -0.703 5.703 14 C 0.143 3.857 15 H 0.079 0.921 16 C -0.130 4.130 17 C 0.140 3.860 18 H 0.114 0.886 19 C -0.133 4.133 20 C -0.119 4.119 21 C 0.130 3.870 22 H 0.105 0.895 23 N -0.609 5.609 24 C -0.213 4.213 25 H 0.087 0.913 26 C -0.065 4.065 27 N -0.948 5.948 28 Si 0.971 3.029 29 H -0.276 1.276 30 H -0.304 1.304 31 H -0.285 1.285 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.123 0.877 43 H 0.133 0.867 44 H 0.408 0.592 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -6.489 -13.637 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.128 4.128 4 N -0.106 5.106 5 O 0.019 5.981 6 C -0.080 4.080 7 C -0.083 4.083 8 C -0.201 4.201 9 C -0.191 4.191 10 C -0.098 4.098 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.352 5.352 14 C 0.036 3.964 15 H 0.096 0.904 16 C -0.170 4.170 17 C 0.033 3.967 18 H 0.131 0.869 19 C -0.172 4.172 20 C -0.159 4.159 21 C 0.022 3.978 22 H 0.123 0.877 23 N -0.330 5.330 24 C -0.341 4.341 25 H 0.105 0.895 26 C -0.258 4.258 27 N -0.598 5.598 28 Si 0.801 3.199 29 H -0.202 1.202 30 H -0.231 1.231 31 H -0.211 1.211 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.243 0.757 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.636 -6.252 -15.238 17.111 hybrid contribution 0.566 0.208 1.900 1.994 sum 5.203 -6.044 -13.338 15.540 Atomic orbital electron populations 1.21648 0.94073 1.02863 1.01199 1.20080 0.96226 0.86958 1.04987 1.23839 1.00538 1.00118 0.88292 1.73766 1.18606 0.93262 1.24947 1.84727 1.63124 1.27010 1.23254 1.24705 1.01005 0.99025 0.83282 1.20243 0.98522 0.91238 0.98250 1.21762 0.92071 1.03622 1.02661 1.20425 1.07984 0.94099 0.96561 1.19964 0.94362 1.05913 0.89531 1.20859 0.89862 0.77704 0.81518 1.90676 1.53863 1.45088 1.56142 1.45903 1.15679 1.62683 1.10955 1.22504 0.83639 0.94765 0.95500 0.90353 1.23252 0.99440 0.96205 0.98111 1.23557 0.89391 0.91802 0.91952 0.86919 1.23055 0.98180 0.96773 0.99203 1.22910 0.96162 0.96154 1.00630 1.23547 0.92815 0.94551 0.86846 0.87676 1.46699 1.48119 1.05807 1.32420 1.19320 1.14966 0.95022 1.04839 0.89505 1.25383 1.02875 0.95619 1.01887 1.69713 1.48396 1.01431 1.40259 0.85247 0.79358 0.75937 0.79319 1.20173 1.23060 1.21125 0.94228 0.89486 0.93779 0.89255 0.87539 0.88520 0.89234 0.91899 0.89813 0.91894 0.85885 0.84899 0.75662 0.92380 0.94540 0.94393 0.91482 0.90282 0.92154 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.89 71.98 0.71 -2.26 16 2 C -0.04 -0.88 6.44 29.85 0.19 -0.68 16 3 C 0.03 0.82 6.58 43.58 0.29 1.10 16 4 N -0.40 -11.80 12.07 -49.54 -0.60 -12.40 16 5 O 0.08 2.26 11.20 71.58 0.80 3.06 16 6 C -0.02 -0.41 6.74 25.04 0.17 -0.25 16 7 C -0.04 -0.86 6.30 29.85 0.19 -0.67 16 8 C -0.14 -2.12 9.89 71.98 0.71 -1.40 16 9 C -0.19 -4.64 4.81 -19.74 -0.10 -4.73 16 10 C -0.06 -1.21 5.95 29.10 0.17 -1.04 16 11 C 0.51 14.75 7.82 87.66 0.69 15.44 16 12 O -0.58 -21.12 15.42 -3.03 -0.05 -21.17 16 13 N -0.70 -20.62 5.11 -433.09 -2.21 -22.83 16 14 C 0.14 4.79 2.76 47.00 0.13 4.92 16 15 H 0.08 2.64 7.42 -2.39 -0.02 2.62 16 16 C -0.13 -5.07 6.24 32.21 0.20 -4.87 16 17 C 0.14 6.18 4.67 46.23 0.22 6.39 16 18 H 0.11 5.97 5.52 -2.38 -0.01 5.95 16 19 C -0.13 -5.00 6.49 32.43 0.21 -4.79 16 20 C -0.12 -3.87 6.49 32.43 0.21 -3.66 16 21 C 0.13 4.48 5.09 46.63 0.24 4.72 16 22 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 23 N -0.61 -27.07 2.97 -613.29 -1.82 -28.89 16 24 C -0.21 -10.48 10.59 84.03 0.89 -9.59 16 25 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 26 C -0.07 -3.38 5.50 84.86 0.47 -2.92 16 27 N -0.95 -52.93 10.46 21.65 0.23 -52.70 16 28 Si 0.97 42.56 29.55 68.60 2.03 44.59 16 29 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 30 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 31 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 32 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.14 7.81 -2.38 -0.02 1.12 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.57 7.65 -2.38 -0.02 1.55 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.88 8.05 -2.38 -0.02 1.86 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.12 2.15 8.08 -2.39 -0.02 2.13 16 43 H 0.13 1.99 7.65 -2.38 -0.02 1.97 16 44 H 0.41 11.14 8.64 -92.71 -0.80 10.33 16 45 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 46 H 0.04 1.56 7.98 -2.39 -0.02 1.54 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 2.24 7.85 -2.39 -0.02 2.22 16 49 H 0.08 2.16 7.88 -2.39 -0.02 2.15 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -66.87 410.32 4.10 -62.78 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.13 Total: 31.85 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.59 Total: -4.28 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -4.40 Total: -116.83 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.75 Total: -18.11 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.87 4.10 -62.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097237660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.070 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds