Wall clock time and date at job start Wed Apr 1 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47204 * 2 1 4 4 C 1.38628 * 120.75345 * 90.00321 * 3 2 1 5 5 C 1.38557 * 119.35332 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.90153 * 0.02562 * 5 4 3 7 7 C 1.32715 * 121.64286 * 359.97438 * 6 5 4 8 8 C 1.48173 * 119.72102 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99577 * 186.79483 * 8 7 6 10 10 N 1.34771 * 120.00089 * 6.79955 * 8 7 6 11 11 C 1.46921 * 120.62979 * 9.80619 * 10 8 7 12 12 C 1.53633 * 108.54217 * 126.37351 * 11 10 8 13 13 C 1.53038 * 109.24063 * 54.85576 * 12 11 10 14 14 N 1.46506 * 109.45780 * 178.49504 * 13 12 11 15 15 C 1.36935 * 120.00177 * 60.06235 * 14 13 12 16 16 H 1.07999 * 120.00063 * 327.23762 * 15 14 13 17 17 C 1.38811 * 119.99852 * 147.23322 * 15 14 13 18 18 N 1.31615 * 120.00278 * 334.53053 * 17 15 14 19 19 Si 1.86806 * 119.99952 * 154.53327 * 17 15 14 20 20 H 1.48492 * 109.47087 * 60.00003 * 19 17 15 21 21 H 1.48497 * 109.46899 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46743 * 300.00158 * 19 17 15 23 23 C 1.46501 * 119.99908 * 240.06757 * 14 13 12 24 24 C 1.53000 * 109.47239 * 83.77823 * 23 14 13 25 25 O 1.42903 * 109.47222 * 64.99827 * 24 23 14 26 26 C 1.53037 * 109.53761 * 298.50977 * 13 12 11 27 27 C 1.46925 * 120.62934 * 190.08791 * 10 8 7 28 28 C 1.38583 * 120.75792 * 269.97686 * 3 2 1 29 29 H 1.08999 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47082 * 299.99978 * 1 2 3 31 31 H 1.08997 * 109.47202 * 59.99754 * 1 2 3 32 32 H 1.08999 * 109.47082 * 240.00022 * 2 1 3 33 33 H 1.08997 * 109.47202 * 120.00246 * 2 1 3 34 34 H 1.08005 * 120.32629 * 359.95090 * 4 3 2 35 35 H 1.07997 * 119.55346 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.58799 * 246.20284 * 11 10 8 37 37 H 1.08997 * 109.59098 * 6.63043 * 11 10 8 38 38 H 1.09002 * 109.62666 * 294.86494 * 12 11 10 39 39 H 1.08994 * 109.42971 * 174.72487 * 12 11 10 40 40 H 1.08996 * 109.45015 * 58.52624 * 13 12 11 41 41 H 0.97005 * 120.00548 * 179.97438 * 18 17 15 42 42 H 1.08990 * 109.47247 * 203.77912 * 23 14 13 43 43 H 1.09000 * 109.47093 * 323.78079 * 23 14 13 44 44 H 1.08997 * 109.47337 * 185.00562 * 24 23 14 45 45 H 1.09000 * 109.47104 * 305.00052 * 24 23 14 46 46 H 0.96698 * 114.00031 * 179.97438 * 25 24 23 47 47 H 1.09008 * 109.50141 * 301.41618 * 26 13 12 48 48 H 1.08998 * 109.52537 * 181.33693 * 26 13 12 49 49 H 1.08994 * 109.58938 * 353.37569 * 27 10 8 50 50 H 1.09011 * 109.58889 * 113.65357 * 27 10 8 51 51 H 1.08004 * 120.47162 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2687 2.0891 1.1913 5 6 2.7309 3.3948 1.1575 6 7 2.9468 4.0055 0.0127 7 6 2.7332 3.4016 -1.1496 8 6 2.9912 4.1298 -2.4140 9 8 2.6821 3.6292 -3.4773 10 7 3.5687 5.3471 -2.3848 11 6 4.1416 5.8742 -1.1388 12 6 5.5964 6.2889 -1.4069 13 6 5.6327 7.2712 -2.5798 14 7 7.0142 7.6977 -2.8167 15 6 7.9721 6.7714 -3.1322 16 1 7.9143 5.7738 -2.7227 17 6 9.0175 7.1148 -3.9785 18 7 8.8636 8.0852 -4.8543 19 14 10.6427 6.1997 -3.8743 20 1 10.4174 4.7579 -4.1492 21 1 11.5877 6.7536 -4.8770 22 1 11.2150 6.3606 -2.5135 23 6 7.3708 9.1150 -2.7157 24 6 7.6389 9.4705 -1.2519 25 8 8.7886 8.7577 -0.7914 26 6 5.0875 6.5885 -3.8363 27 6 3.6320 6.1749 -3.5970 28 6 2.2690 2.0888 -1.1909 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0939 1.5969 2.1367 35 1 2.9165 3.9184 2.0836 36 1 3.5667 6.7399 -0.8098 37 1 4.1160 5.1023 -0.3696 38 1 6.1891 5.4075 -1.6519 39 1 6.0065 6.7682 -0.5181 40 1 5.0196 8.1410 -2.3440 41 1 9.5943 8.3254 -5.4455 42 1 8.2665 9.3072 -3.3062 43 1 6.5493 9.7241 -3.0930 44 1 7.8169 10.5423 -1.1651 45 1 6.7747 9.1957 -0.6472 46 1 9.0181 8.9353 0.1310 47 1 5.6851 5.7044 -4.0585 48 1 5.1355 7.2807 -4.6769 49 1 3.2700 5.6016 -4.4504 50 1 3.0143 7.0635 -3.4655 51 1 2.0957 1.5987 -2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098378182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:23 Heat of formation + Delta-G solvation = -33.385728 kcal Electronic energy + Delta-G solvation = -31552.362956 eV Core-core repulsion = 27452.068462 eV Total energy + Delta-G solvation = -4100.294494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.96560 -40.43064 -39.04291 -37.67155 -36.38225 -35.92352 -33.82326 -32.75907 -31.91073 -31.81842 -31.17006 -29.43564 -26.94302 -25.79406 -25.28893 -24.54832 -23.81176 -23.00634 -22.15937 -21.49924 -20.32439 -18.61712 -18.19484 -17.98244 -17.70275 -17.06666 -16.88558 -16.62840 -16.50115 -16.08024 -15.84003 -15.61142 -15.08724 -15.06769 -14.88991 -14.67746 -14.55482 -14.40835 -14.23969 -14.03996 -13.70655 -13.62876 -13.13849 -13.09570 -13.01151 -12.89552 -12.74852 -12.55261 -12.39776 -12.27759 -12.06699 -11.88237 -11.83073 -11.65750 -11.50482 -11.37202 -11.16012 -10.64253 -10.60439 -10.38007 -10.24099 -9.89494 -9.60559 -8.50153 -7.76808 -5.24202 -0.37690 0.19318 1.42446 1.46348 1.53367 1.65255 1.93579 2.56513 2.79584 3.04470 3.33140 3.53325 3.57611 3.71565 3.84410 3.96359 4.01823 4.03781 4.18510 4.24540 4.31576 4.38900 4.44802 4.45917 4.48915 4.58861 4.61380 4.66814 4.72995 4.76843 4.79683 4.89670 4.94535 4.96340 4.99876 5.08534 5.10026 5.12170 5.20581 5.25458 5.36835 5.38126 5.45699 5.59310 5.61436 5.75316 5.82729 5.85397 6.35688 6.51869 6.69531 7.04892 7.22185 7.28741 7.99261 8.45499 9.21786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.002722 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.417808 B =10284.989514 C =10438.238830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.044 4.044 4 C -0.135 4.135 5 C 0.093 3.907 6 N -0.467 5.467 7 C 0.062 3.938 8 C 0.557 3.443 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.086 3.914 12 C -0.125 4.125 13 C 0.172 3.828 14 N -0.584 5.584 15 C -0.221 4.221 16 H 0.040 0.960 17 C -0.037 4.037 18 N -0.919 5.919 19 Si 0.940 3.060 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.284 1.284 23 C 0.136 3.864 24 C 0.070 3.930 25 O -0.576 6.576 26 C -0.120 4.120 27 C 0.118 3.882 28 C -0.123 4.123 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.246 0.754 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.375 0.625 47 H 0.029 0.971 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -9.662 18.246 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.052 4.052 4 C -0.154 4.154 5 C -0.065 4.065 6 N -0.180 5.180 7 C -0.073 4.073 8 C 0.346 3.654 9 O -0.461 6.461 10 N -0.316 5.316 11 C -0.036 4.036 12 C -0.165 4.165 13 C 0.066 3.934 14 N -0.303 5.303 15 C -0.351 4.351 16 H 0.058 0.942 17 C -0.233 4.233 18 N -0.566 5.566 19 Si 0.770 3.230 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.211 1.211 23 C 0.010 3.990 24 C -0.010 4.010 25 O -0.381 6.381 26 C -0.160 4.160 27 C -0.005 4.005 28 C -0.144 4.144 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.197 0.803 35 H 0.216 0.784 36 H 0.097 0.903 37 H 0.169 0.831 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.221 0.779 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.395 -9.190 16.889 25.928 hybrid contribution 1.174 -0.657 -0.377 1.397 sum -16.222 -9.847 16.511 25.154 Atomic orbital electron populations 1.21745 0.93532 1.03004 1.02073 1.20681 0.96950 0.89849 1.04781 1.20682 0.94652 0.97893 0.91980 1.22684 0.97401 0.95504 0.99818 1.23647 0.93496 0.93084 0.96276 1.67461 1.14783 1.37177 0.98536 1.20854 1.01471 0.93304 0.91705 1.18467 0.77741 0.81109 0.88118 1.90712 1.55663 1.67735 1.32014 1.48097 1.55150 1.15989 1.12336 1.23197 0.91431 1.02683 0.86251 1.22275 0.96123 0.98954 0.99113 1.20545 0.85396 0.95111 0.92369 1.43951 1.03534 1.02935 1.79906 1.18729 1.02679 0.94183 1.19558 0.94191 1.25392 1.02312 0.99920 0.95640 1.70133 1.31282 1.34585 1.20562 0.85762 0.82154 0.78193 0.76870 1.21168 1.22165 1.21090 1.21001 1.00193 0.84416 0.93416 1.22864 0.87170 0.93533 0.97441 1.86781 1.48358 1.71008 1.32001 1.22105 0.94258 0.99756 0.99906 1.21670 0.96761 0.94686 0.87352 1.22023 0.98044 0.93757 1.00570 0.90539 0.91672 0.93834 0.90572 0.87880 0.80312 0.78373 0.90298 0.83063 0.95246 0.90987 0.91438 0.94526 0.91715 0.93640 0.93598 0.93936 0.77918 0.95224 0.92759 0.90888 0.89209 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.09 -0.85 6.11 29.85 0.18 -0.67 16 3 C -0.04 -0.68 5.17 -19.69 -0.10 -0.79 16 4 C -0.13 -1.52 9.82 22.44 0.22 -1.30 16 5 C 0.09 1.35 11.18 84.81 0.95 2.30 16 6 N -0.47 -10.74 6.11 -184.91 -1.13 -11.87 16 7 C 0.06 1.74 6.60 41.91 0.28 2.02 16 8 C 0.56 19.65 7.64 86.88 0.66 20.32 16 9 O -0.58 -23.82 15.79 -3.77 -0.06 -23.88 16 10 N -0.59 -19.87 2.97 -821.10 -2.44 -22.31 16 11 C 0.09 2.56 5.88 86.51 0.51 3.07 16 12 C -0.12 -4.55 5.32 30.82 0.16 -4.39 16 13 C 0.17 7.00 2.59 45.02 0.12 7.12 16 14 N -0.58 -28.60 2.35 -677.90 -1.59 -30.19 16 15 C -0.22 -12.44 8.08 84.03 0.68 -11.76 16 16 H 0.04 2.36 6.89 -2.91 -0.02 2.34 16 17 C -0.04 -2.15 4.83 84.86 0.41 -1.74 16 18 N -0.92 -55.71 11.49 21.65 0.25 -55.46 16 19 Si 0.94 48.27 29.62 68.60 2.03 50.30 16 20 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 22 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 23 C 0.14 6.32 5.57 86.38 0.48 6.80 16 24 C 0.07 2.59 7.38 71.98 0.53 3.13 16 25 O -0.58 -23.51 13.43 -148.98 -2.00 -25.51 16 26 C -0.12 -5.05 5.30 30.67 0.16 -4.89 16 27 C 0.12 4.12 6.44 86.36 0.56 4.68 16 28 C -0.12 -2.89 9.34 22.61 0.21 -2.68 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.10 0.57 8.10 -2.39 -0.02 0.55 16 34 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.15 4.22 4.07 -63.52 -0.26 3.96 16 38 H 0.03 1.26 7.03 -2.39 -0.02 1.24 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.46 7.88 -2.39 -0.02 2.44 16 41 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 42 H 0.06 3.59 5.40 -2.39 -0.01 3.58 16 43 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.37 10.66 9.12 -74.06 -0.68 9.99 16 47 H 0.03 1.45 7.71 -2.38 -0.02 1.44 16 48 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.07 2.71 7.01 -2.39 -0.02 2.69 16 50 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 51 H 0.13 3.36 7.66 -2.91 -0.02 3.34 16 Total: -1.00 -78.12 404.96 1.79 -76.32 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.01 Total: 21.99 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.72 Total: 20.61 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.91 Total: -119.82 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.06 Total: -49.39 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -78.12 1.79 -76.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098378182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.937 kcal (2) G-P(sol) polarization free energy of solvation -78.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds