Wall clock time and date at job start Wed Apr 1 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47331 * 2 1 4 4 C 1.38174 * 120.50060 * 265.03061 * 3 2 1 5 5 N 1.31798 * 120.89430 * 179.97438 * 4 3 2 6 6 C 1.31838 * 122.04582 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.89896 * 359.74075 * 6 5 4 8 8 C 1.39795 * 120.49614 * 84.99836 * 3 2 1 9 9 C 1.48145 * 120.92638 * 0.02562 * 8 3 2 10 10 O 1.21516 * 119.99869 * 322.87679 * 9 8 3 11 11 N 1.34779 * 120.00247 * 142.87259 * 9 8 3 12 12 C 1.46928 * 120.63138 * 175.75100 * 11 9 8 13 13 C 1.53189 * 108.77591 * 126.36652 * 12 11 9 14 14 C 1.53042 * 109.31070 * 54.63719 * 13 12 11 15 15 N 1.46495 * 109.46069 * 178.61333 * 14 13 12 16 16 C 1.36939 * 120.00077 * 60.06758 * 15 14 13 17 17 H 1.08005 * 120.00024 * 322.63683 * 16 15 14 18 18 C 1.38813 * 120.00211 * 142.63915 * 16 15 14 19 19 N 1.31620 * 119.99588 * 338.63158 * 18 16 15 20 20 Si 1.86794 * 120.00116 * 158.62895 * 18 16 15 21 21 H 1.48502 * 109.47293 * 90.00060 * 20 18 16 22 22 H 1.48503 * 109.47200 * 209.99764 * 20 18 16 23 23 H 1.48498 * 109.47457 * 329.99989 * 20 18 16 24 24 C 1.46501 * 120.00337 * 240.06876 * 15 14 13 25 25 C 1.53003 * 109.47137 * 84.45232 * 24 15 14 26 26 O 1.42900 * 109.46742 * 65.00596 * 25 24 15 27 27 C 1.53045 * 109.53846 * 298.63304 * 14 13 12 28 28 C 1.46926 * 120.63047 * 355.72803 * 11 9 8 29 29 H 1.09003 * 109.47234 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.47619 * 59.99660 * 1 2 3 31 31 H 1.09007 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46762 * 240.00646 * 2 1 3 33 33 H 1.08992 * 109.47351 * 120.00555 * 2 1 3 34 34 H 1.08001 * 119.54940 * 359.97128 * 4 3 2 35 35 H 1.07998 * 119.54625 * 179.97438 * 6 5 4 36 36 H 1.07994 * 120.49524 * 180.28628 * 7 6 5 37 37 H 1.08999 * 109.58854 * 246.16088 * 12 11 9 38 38 H 1.09004 * 109.58749 * 6.58273 * 12 11 9 39 39 H 1.09002 * 109.49947 * 174.58501 * 13 12 11 40 40 H 1.09002 * 109.50093 * 294.68787 * 13 12 11 41 41 H 1.08998 * 109.44874 * 58.64668 * 14 13 12 42 42 H 0.97008 * 119.99426 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47784 * 204.45917 * 24 15 14 44 44 H 1.09003 * 109.46576 * 324.45740 * 24 15 14 45 45 H 1.09000 * 109.47001 * 185.00201 * 25 24 15 46 46 H 1.08996 * 109.47410 * 305.00153 * 25 24 15 47 47 H 0.96699 * 113.99713 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.49783 * 301.41444 * 27 14 13 49 49 H 1.08996 * 109.52711 * 181.33170 * 27 14 13 50 50 H 1.09001 * 109.58538 * 353.41590 * 28 11 9 51 51 H 1.08994 * 109.58550 * 113.69910 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3634 2.0476 -1.1861 5 7 2.8030 3.2901 -1.1951 6 6 2.9479 3.9889 -0.0867 7 6 2.6359 3.4419 1.1427 8 6 2.1698 2.1247 1.2000 9 6 1.8272 1.4942 2.4960 10 8 0.8776 0.7399 2.5725 11 7 2.5687 1.7571 3.5903 12 6 2.1875 1.2139 4.9012 13 6 3.3853 0.4627 5.4909 14 6 4.5995 1.3937 5.5253 15 7 5.7382 0.6889 6.1192 16 6 6.2156 -0.4545 5.5361 17 1 5.5301 -1.1603 5.0907 18 6 7.5806 -0.7063 5.5174 19 7 8.4346 0.2852 5.6588 20 14 8.2052 -2.4521 5.2915 21 1 8.3859 -2.7299 3.8439 22 1 9.5059 -2.6069 5.9913 23 1 7.2207 -3.4076 5.8598 24 6 6.3662 1.2072 7.3371 25 6 5.5934 0.7104 8.5606 26 8 5.7083 -0.7110 8.6516 27 6 4.9540 1.8254 4.1004 28 6 3.7740 2.5920 3.4950 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.2605 1.5121 -2.1183 35 1 3.3119 5.0043 -0.1410 36 1 2.7527 4.0218 2.0462 37 1 1.9042 2.0296 5.5664 38 1 1.3485 0.5282 4.7827 39 1 3.1478 0.1370 6.5036 40 1 3.6104 -0.4060 4.8722 41 1 4.3650 2.2740 6.1237 42 1 9.3885 0.1091 5.6461 43 1 7.3970 0.8571 7.3917 44 1 6.3532 2.2970 7.3170 45 1 6.0056 1.1667 9.4606 46 1 4.5430 0.9846 8.4628 47 1 5.2418 -1.0957 9.4062 48 1 5.1643 0.9438 3.4949 49 1 5.8331 2.4694 4.1229 50 1 3.9818 2.8155 2.4486 51 1 3.6191 3.5211 4.0433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098415721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:01 Heat of formation + Delta-G solvation = -18.469650 kcal Electronic energy + Delta-G solvation = -32189.942452 eV Core-core repulsion = 28090.294768 eV Total energy + Delta-G solvation = -4099.647684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.06032 -39.34097 -37.63692 -36.25855 -34.85638 -34.42157 -33.00667 -31.76963 -30.51583 -30.34249 -29.80077 -27.75197 -25.63491 -24.57076 -24.18284 -23.06442 -22.88170 -21.60071 -20.78663 -20.02893 -19.17231 -17.72031 -16.84301 -16.63715 -16.41059 -15.93482 -15.62257 -15.09964 -14.96304 -14.83516 -14.45361 -14.14489 -13.95533 -13.80411 -13.76165 -13.61468 -13.29121 -13.09829 -12.98364 -12.59884 -12.55686 -12.18355 -12.08980 -11.88108 -11.60462 -11.28156 -11.19971 -10.98272 -10.95295 -10.82401 -10.67323 -10.53396 -10.14640 -10.10492 -9.95782 -9.89947 -9.76460 -9.52852 -9.33395 -9.13724 -9.05552 -8.47470 -8.37495 -6.53359 -5.74241 -3.26982 0.70294 0.91616 2.74727 3.03937 3.41740 3.49209 3.55886 3.65156 4.22991 4.32305 4.54637 4.57541 4.63748 4.79951 5.07319 5.12240 5.18442 5.24106 5.24858 5.36344 5.39601 5.46230 5.48088 5.49110 5.60620 5.68421 5.72280 5.75244 5.80588 5.92366 5.96867 5.98888 6.04148 6.06894 6.20690 6.24274 6.33374 6.36126 6.45086 6.46062 6.59255 6.64625 6.76356 6.80116 7.06457 7.14540 7.46547 7.62777 7.75451 7.89260 8.16107 8.43576 8.61707 9.23696 9.87683 10.42820 11.28974 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003232 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.488692 B = 8662.104374 C = 9048.430111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.080 4.080 4 C 0.096 3.904 5 N -0.470 5.470 6 C 0.086 3.914 7 C -0.141 4.141 8 C -0.080 4.080 9 C 0.557 3.443 10 O -0.531 6.531 11 N -0.593 5.593 12 C 0.115 3.885 13 C -0.139 4.139 14 C 0.177 3.823 15 N -0.571 5.571 16 C -0.235 4.235 17 H 0.054 0.946 18 C 0.017 3.983 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.146 3.854 25 C 0.059 3.941 26 O -0.544 6.544 27 C -0.134 4.134 28 C 0.092 3.908 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.101 0.899 44 H 0.036 0.964 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.350 0.650 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 7.302 -5.459 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.062 4.062 5 N -0.179 5.179 6 C -0.071 4.071 7 C -0.161 4.161 8 C -0.091 4.091 9 C 0.345 3.655 10 O -0.409 6.409 11 N -0.325 5.325 12 C -0.008 4.008 13 C -0.179 4.179 14 C 0.070 3.930 15 N -0.290 5.290 16 C -0.364 4.364 17 H 0.072 0.928 18 C -0.182 4.182 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.020 3.980 25 C -0.022 4.022 26 O -0.345 6.345 27 C -0.174 4.174 28 C -0.031 4.031 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.119 0.881 44 H 0.054 0.946 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.192 0.808 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.161 7.397 -6.722 15.741 hybrid contribution 0.073 -1.237 1.386 1.859 sum -12.088 6.159 -5.337 14.578 Atomic orbital electron populations 1.21772 0.93747 1.01988 1.02564 1.20499 0.97217 0.90865 1.03211 1.21052 0.96745 0.97955 0.92533 1.22661 0.95448 0.90837 0.97246 1.67538 1.11160 1.07520 1.31642 1.22710 0.97109 0.99961 0.87275 1.22524 0.98173 0.95029 1.00393 1.20255 0.99866 0.94948 0.94025 1.18184 0.82899 0.81171 0.83264 1.90718 1.29230 1.36086 1.84863 1.48055 1.26045 1.50375 1.08012 1.21733 0.98909 0.98075 0.82049 1.22360 0.94692 1.00100 1.00727 1.20311 0.88399 0.92504 0.91820 1.43696 1.33848 1.27257 1.24164 1.18711 0.89240 0.95422 1.33053 0.92809 1.25016 0.96626 0.96752 0.99842 1.69992 1.01311 1.29505 1.52898 0.86450 0.78045 0.85864 0.77222 1.21786 1.21740 1.20380 1.20974 0.99966 0.94093 0.82999 1.23104 0.98410 0.81540 0.99125 1.86852 1.76361 1.20759 1.50552 1.22315 0.95473 1.00598 0.98991 1.22391 0.84996 0.93571 1.02152 0.90358 0.93604 0.92574 0.91027 0.90104 0.82335 0.82205 0.83669 0.91896 0.89535 0.91414 0.91277 0.93582 0.93856 0.88141 0.94613 0.96284 0.95998 0.80763 0.90979 0.90759 0.89597 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.56 37.16 0.36 -1.29 16 2 C -0.08 -0.96 5.35 -27.88 -0.15 -1.11 16 3 C -0.08 -1.00 5.18 -104.06 -0.54 -1.54 16 4 C 0.10 1.09 10.84 -17.59 -0.19 0.90 16 5 N -0.47 -5.69 10.34 -13.30 -0.14 -5.83 16 6 C 0.09 0.90 11.17 -17.59 -0.20 0.71 16 7 C -0.14 -1.54 7.46 -39.02 -0.29 -1.83 16 8 C -0.08 -1.05 5.28 -104.65 -0.55 -1.60 16 9 C 0.56 8.35 6.86 -12.19 -0.08 8.26 16 10 O -0.53 -8.95 12.27 5.35 0.07 -8.89 16 11 N -0.59 -8.53 2.97 -173.77 -0.52 -9.05 16 12 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 13 C -0.14 -2.39 5.30 -26.61 -0.14 -2.54 16 14 C 0.18 3.30 2.59 -67.89 -0.18 3.12 16 15 N -0.57 -13.03 2.32 -165.61 -0.38 -13.41 16 16 C -0.23 -6.13 8.01 -15.06 -0.12 -6.25 16 17 H 0.05 1.46 6.89 -52.48 -0.36 1.10 16 18 C 0.02 0.46 4.90 -17.43 -0.09 0.37 16 19 N -0.89 -25.08 11.54 55.49 0.64 -24.44 16 20 Si 0.89 22.12 29.60 -169.99 -5.03 17.09 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.15 3.24 5.56 -4.04 -0.02 3.21 16 25 C 0.06 1.10 7.39 37.16 0.27 1.37 16 26 O -0.54 -11.07 13.40 -35.23 -0.47 -11.54 16 27 C -0.13 -2.37 5.31 -26.61 -0.14 -2.51 16 28 C 0.09 1.23 4.89 -3.71 -0.02 1.21 16 29 H 0.08 1.07 5.96 -51.93 -0.31 0.76 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.08 1.15 6.84 -51.93 -0.36 0.79 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.15 1.31 6.29 -52.49 -0.33 0.98 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 41 H 0.05 0.79 7.87 -51.93 -0.41 0.39 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.10 2.62 5.58 -51.93 -0.29 2.33 16 44 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.35 5.15 9.12 45.56 0.42 5.56 16 48 H 0.07 1.50 7.71 -51.93 -0.40 1.10 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.09 1.07 4.44 -51.93 -0.23 0.84 16 51 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -31.71 396.25 -9.16 -40.87 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.20 Total: 7.09 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.10 Total: 2.14 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.40 Total: -52.73 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.41 Total: -20.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.71 -9.16 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098415721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.403 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds