Wall clock time and date at job start Wed Apr 1 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47331 * 2 1 4 4 C 1.38174 * 120.50060 * 265.03061 * 3 2 1 5 5 N 1.31798 * 120.89430 * 179.97438 * 4 3 2 6 6 C 1.31838 * 122.04582 * 0.02562 * 5 4 3 7 7 C 1.38125 * 120.89896 * 359.74075 * 6 5 4 8 8 C 1.39795 * 120.49614 * 84.99836 * 3 2 1 9 9 C 1.48145 * 120.92638 * 0.02562 * 8 3 2 10 10 O 1.21516 * 119.99869 * 322.87679 * 9 8 3 11 11 N 1.34779 * 120.00247 * 142.87259 * 9 8 3 12 12 C 1.46928 * 120.63138 * 175.75100 * 11 9 8 13 13 C 1.53189 * 108.77591 * 126.36652 * 12 11 9 14 14 C 1.53042 * 109.31070 * 54.63719 * 13 12 11 15 15 N 1.46495 * 109.46069 * 178.61333 * 14 13 12 16 16 C 1.36939 * 120.00077 * 60.06758 * 15 14 13 17 17 H 1.08005 * 120.00024 * 322.63683 * 16 15 14 18 18 C 1.38813 * 120.00211 * 142.63915 * 16 15 14 19 19 N 1.31620 * 119.99588 * 338.63158 * 18 16 15 20 20 Si 1.86794 * 120.00116 * 158.62895 * 18 16 15 21 21 H 1.48502 * 109.47293 * 90.00060 * 20 18 16 22 22 H 1.48503 * 109.47200 * 209.99764 * 20 18 16 23 23 H 1.48498 * 109.47457 * 329.99989 * 20 18 16 24 24 C 1.46501 * 120.00337 * 240.06876 * 15 14 13 25 25 C 1.53003 * 109.47137 * 84.45232 * 24 15 14 26 26 O 1.42900 * 109.46742 * 65.00596 * 25 24 15 27 27 C 1.53045 * 109.53846 * 298.63304 * 14 13 12 28 28 C 1.46926 * 120.63047 * 355.72803 * 11 9 8 29 29 H 1.09003 * 109.47234 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.47619 * 59.99660 * 1 2 3 31 31 H 1.09007 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46762 * 240.00646 * 2 1 3 33 33 H 1.08992 * 109.47351 * 120.00555 * 2 1 3 34 34 H 1.08001 * 119.54940 * 359.97128 * 4 3 2 35 35 H 1.07998 * 119.54625 * 179.97438 * 6 5 4 36 36 H 1.07994 * 120.49524 * 180.28628 * 7 6 5 37 37 H 1.08999 * 109.58854 * 246.16088 * 12 11 9 38 38 H 1.09004 * 109.58749 * 6.58273 * 12 11 9 39 39 H 1.09002 * 109.49947 * 174.58501 * 13 12 11 40 40 H 1.09002 * 109.50093 * 294.68787 * 13 12 11 41 41 H 1.08998 * 109.44874 * 58.64668 * 14 13 12 42 42 H 0.97008 * 119.99426 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47784 * 204.45917 * 24 15 14 44 44 H 1.09003 * 109.46576 * 324.45740 * 24 15 14 45 45 H 1.09000 * 109.47001 * 185.00201 * 25 24 15 46 46 H 1.08996 * 109.47410 * 305.00153 * 25 24 15 47 47 H 0.96699 * 113.99713 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.49783 * 301.41444 * 27 14 13 49 49 H 1.08996 * 109.52711 * 181.33170 * 27 14 13 50 50 H 1.09001 * 109.58538 * 353.41590 * 28 11 9 51 51 H 1.08994 * 109.58550 * 113.69910 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3634 2.0476 -1.1861 5 7 2.8030 3.2901 -1.1951 6 6 2.9479 3.9889 -0.0867 7 6 2.6359 3.4419 1.1427 8 6 2.1698 2.1247 1.2000 9 6 1.8272 1.4942 2.4960 10 8 0.8776 0.7399 2.5725 11 7 2.5687 1.7571 3.5903 12 6 2.1875 1.2139 4.9012 13 6 3.3853 0.4627 5.4909 14 6 4.5995 1.3937 5.5253 15 7 5.7382 0.6889 6.1192 16 6 6.2156 -0.4545 5.5361 17 1 5.5301 -1.1603 5.0907 18 6 7.5806 -0.7063 5.5174 19 7 8.4346 0.2852 5.6588 20 14 8.2052 -2.4521 5.2915 21 1 8.3859 -2.7299 3.8439 22 1 9.5059 -2.6069 5.9913 23 1 7.2207 -3.4076 5.8598 24 6 6.3662 1.2072 7.3371 25 6 5.5934 0.7104 8.5606 26 8 5.7083 -0.7110 8.6516 27 6 4.9540 1.8254 4.1004 28 6 3.7740 2.5920 3.4950 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.2605 1.5121 -2.1183 35 1 3.3119 5.0043 -0.1410 36 1 2.7527 4.0218 2.0462 37 1 1.9042 2.0296 5.5664 38 1 1.3485 0.5282 4.7827 39 1 3.1478 0.1370 6.5036 40 1 3.6104 -0.4060 4.8722 41 1 4.3650 2.2740 6.1237 42 1 9.3885 0.1091 5.6461 43 1 7.3970 0.8571 7.3917 44 1 6.3532 2.2970 7.3170 45 1 6.0056 1.1667 9.4606 46 1 4.5430 0.9846 8.4628 47 1 5.2418 -1.0957 9.4062 48 1 5.1643 0.9438 3.4949 49 1 5.8331 2.4694 4.1229 50 1 3.9818 2.8155 2.4486 51 1 3.6191 3.5211 4.0433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098415721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:00 Heat of formation + Delta-G solvation = -39.524500 kcal Electronic energy + Delta-G solvation = -32190.855459 eV Core-core repulsion = 28090.294768 eV Total energy + Delta-G solvation = -4100.560691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06353 -40.42956 -39.05010 -37.71885 -36.34265 -35.43340 -34.26407 -33.31418 -31.99231 -31.68038 -30.70991 -29.41733 -26.98109 -25.87192 -25.29681 -24.37407 -24.15906 -22.67449 -22.17876 -21.53788 -20.40870 -18.87094 -18.18826 -18.04817 -17.81469 -17.13239 -16.78330 -16.58523 -16.18408 -16.05213 -15.92712 -15.60350 -15.14117 -15.07065 -14.80018 -14.70901 -14.64161 -14.37835 -14.33818 -13.99857 -13.74724 -13.48056 -13.26124 -13.14987 -13.02090 -12.90556 -12.74973 -12.58808 -12.40666 -12.20492 -12.14647 -11.92872 -11.82185 -11.60358 -11.53257 -11.22684 -11.14628 -10.72626 -10.62844 -10.40530 -10.31736 -9.93456 -9.66452 -8.44739 -7.76231 -5.30538 -0.23861 0.07552 1.40324 1.44577 1.53593 1.62716 1.95202 2.54805 2.76835 3.25425 3.34517 3.47758 3.57160 3.72432 3.77077 3.84273 3.93327 3.95114 4.12351 4.20349 4.29523 4.33816 4.38789 4.43835 4.47716 4.58538 4.60840 4.66763 4.68202 4.74850 4.79334 4.82351 4.85276 4.88808 4.93256 4.95473 5.06405 5.08638 5.15510 5.17730 5.30002 5.37695 5.49319 5.60302 5.62351 5.65926 5.75102 5.83680 6.31272 6.54937 6.91125 7.02126 7.20821 7.29311 7.98534 8.46283 9.21214 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003232 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.488692 B = 8662.104374 C = 9048.430111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C -0.094 4.094 4 C 0.095 3.905 5 N -0.486 5.486 6 C 0.088 3.912 7 C -0.137 4.137 8 C -0.101 4.101 9 C 0.554 3.446 10 O -0.556 6.556 11 N -0.595 5.595 12 C 0.123 3.877 13 C -0.125 4.125 14 C 0.173 3.827 15 N -0.584 5.584 16 C -0.220 4.220 17 H 0.035 0.965 18 C -0.028 4.028 19 N -0.916 5.916 20 Si 0.936 3.064 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.283 1.283 24 C 0.141 3.859 25 C 0.066 3.934 26 O -0.578 6.578 27 C -0.124 4.124 28 C 0.103 3.897 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.246 0.754 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.374 0.626 48 H 0.030 0.970 49 H 0.060 0.940 50 H 0.098 0.902 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 9.434 -5.643 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.097 4.097 4 C -0.062 4.062 5 N -0.195 5.195 6 C -0.069 4.069 7 C -0.157 4.157 8 C -0.112 4.112 9 C 0.343 3.657 10 O -0.436 6.436 11 N -0.327 5.327 12 C 0.000 4.000 13 C -0.165 4.165 14 C 0.067 3.933 15 N -0.303 5.303 16 C -0.351 4.351 17 H 0.053 0.947 18 C -0.225 4.225 19 N -0.562 5.562 20 Si 0.766 3.234 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.209 1.209 24 C 0.014 3.986 25 C -0.013 4.013 26 O -0.383 6.383 27 C -0.164 4.164 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.199 0.801 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.220 0.780 48 H 0.048 0.952 49 H 0.079 0.921 50 H 0.116 0.884 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.564 9.530 -6.893 17.953 hybrid contribution 0.448 -1.901 1.459 2.438 sum -13.116 7.629 -5.433 16.116 Atomic orbital electron populations 1.21693 0.93425 1.02195 1.02095 1.20466 0.97489 0.90928 1.02701 1.21174 0.97416 0.98135 0.92951 1.22987 0.94731 0.90864 0.97661 1.67614 1.11560 1.07821 1.32490 1.23269 0.95905 1.01074 0.86609 1.22754 0.97245 0.94076 1.01627 1.20298 1.01441 0.96225 0.93224 1.18526 0.82557 0.80746 0.83900 1.90707 1.30419 1.37163 1.85278 1.48113 1.26199 1.50458 1.07918 1.21650 0.96983 0.98734 0.82583 1.22161 0.95449 0.98737 1.00142 1.20522 0.87141 0.93236 0.92431 1.43859 1.34641 1.26945 1.24882 1.18653 0.88777 0.96253 1.31444 0.94746 1.25445 0.97067 0.98729 1.01246 1.70080 1.00907 1.30275 1.54923 0.85787 0.77240 0.83466 0.76905 1.21769 1.21983 1.20870 1.20950 0.98373 0.94960 0.84278 1.22925 0.99014 0.80988 0.98401 1.86772 1.77290 1.21815 1.52424 1.22129 0.97070 0.99151 0.98072 1.22388 0.82651 0.93720 1.03153 0.92774 0.91939 0.92053 0.88912 0.93137 0.80122 0.79008 0.81446 0.88649 0.90302 0.91417 0.95181 0.90907 0.94512 0.92208 0.93091 0.93642 0.94034 0.77956 0.95156 0.92084 0.88370 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.56 71.98 0.69 -2.40 16 2 C -0.08 -1.85 5.35 29.85 0.16 -1.69 16 3 C -0.09 -2.26 5.18 -19.50 -0.10 -2.36 16 4 C 0.09 1.99 10.84 84.68 0.92 2.90 16 5 N -0.49 -10.59 10.34 -196.00 -2.03 -12.62 16 6 C 0.09 1.57 11.17 84.67 0.95 2.52 16 7 C -0.14 -2.62 7.46 22.63 0.17 -2.45 16 8 C -0.10 -2.54 5.28 -19.88 -0.10 -2.64 16 9 C 0.55 16.25 6.86 86.87 0.60 16.85 16 10 O -0.56 -18.95 12.27 -3.77 -0.05 -19.00 16 11 N -0.60 -16.24 2.97 -821.98 -2.44 -18.68 16 12 C 0.12 3.35 6.44 86.36 0.56 3.91 16 13 C -0.12 -4.25 5.30 30.67 0.16 -4.09 16 14 C 0.17 6.26 2.59 45.02 0.12 6.37 16 15 N -0.58 -26.68 2.32 -677.87 -1.57 -28.26 16 16 C -0.22 -11.81 8.01 84.03 0.67 -11.14 16 17 H 0.03 1.97 6.89 -2.91 -0.02 1.95 16 18 C -0.03 -1.59 4.90 84.86 0.42 -1.17 16 19 N -0.92 -52.81 11.54 21.65 0.25 -52.56 16 20 Si 0.94 46.69 29.60 68.60 2.03 48.72 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 24 C 0.14 6.13 5.56 86.38 0.48 6.61 16 25 C 0.07 2.36 7.39 71.98 0.53 2.89 16 26 O -0.58 -22.91 13.40 -148.98 -2.00 -24.91 16 27 C -0.12 -4.33 5.31 30.67 0.16 -4.17 16 28 C 0.10 2.51 4.89 86.36 0.42 2.93 16 29 H 0.05 1.50 5.96 -2.39 -0.01 1.48 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.09 1.74 8.06 -2.38 -0.02 1.72 16 33 H 0.05 1.50 6.84 -2.39 -0.02 1.48 16 34 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.17 2.35 6.29 -2.91 -0.02 2.34 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.32 7.00 -2.38 -0.02 2.30 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.03 1.24 7.06 -2.39 -0.02 1.22 16 41 H 0.07 2.27 7.87 -2.39 -0.02 2.26 16 42 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 43 H 0.06 3.16 5.58 -2.39 -0.01 3.15 16 44 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 45 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.37 10.40 9.12 -74.06 -0.68 9.73 16 48 H 0.03 1.29 7.71 -2.39 -0.02 1.27 16 49 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.10 2.20 4.44 -2.39 -0.01 2.19 16 51 H 0.10 1.86 8.11 -2.39 -0.02 1.84 16 Total: -1.00 -72.12 396.25 1.26 -70.86 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.27 Total: 23.57 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.79 Total: 12.86 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -5.79 Total: -112.11 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.04 Total: -43.91 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -72.12 1.26 -70.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098415721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds