Wall clock time and date at job start Wed Apr 1 2020 04:48:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50700 * 109.47018 * 2 1
4 4 C 1.38353 * 120.34626 * 270.02147 * 3 2 1
5 5 N 1.31933 * 121.07673 * 179.97438 * 4 3 2
6 6 C 1.31688 * 121.87799 * 359.72506 * 5 4 3
7 7 C 1.39518 * 120.56930 * 0.54256 * 6 5 4
8 8 C 1.47846 * 120.55943 * 179.75438 * 7 6 5
9 9 O 1.21550 * 120.00008 * 135.18994 * 8 7 6
10 10 N 1.34769 * 119.99657 * 314.91282 * 8 7 6
11 11 C 1.46927 * 120.63592 * 3.31616 * 10 8 7
12 12 C 1.52761 * 109.01023 * 233.58691 * 11 10 8
13 13 C 1.53047 * 109.37963 * 305.58264 * 12 11 10
14 14 N 1.46491 * 109.44760 * 181.25622 * 13 12 11
15 15 C 1.36939 * 119.99946 * 299.93946 * 14 13 12
16 16 H 1.07998 * 119.99977 * 326.12614 * 15 14 13
17 17 C 1.38818 * 120.00226 * 146.13117 * 15 14 13
18 18 N 1.31618 * 119.99807 * 334.90705 * 17 15 14
19 19 Si 1.86798 * 120.00188 * 154.91175 * 17 15 14
20 20 H 1.48496 * 109.47468 * 59.99684 * 19 17 15
21 21 H 1.48499 * 109.46918 * 179.97438 * 19 17 15
22 22 H 1.48506 * 109.46757 * 299.99447 * 19 17 15
23 23 C 1.46502 * 120.00397 * 119.93938 * 14 13 12
24 24 C 1.52998 * 109.46908 * 85.94418 * 23 14 13
25 25 O 1.42899 * 109.47281 * 65.00403 * 24 23 14
26 26 C 1.53042 * 109.53608 * 61.24346 * 13 12 11
27 27 C 1.46929 * 120.62832 * 183.59475 * 10 8 7
28 28 C 1.38353 * 120.34936 * 90.00690 * 3 2 1
29 29 H 1.09007 * 109.46682 * 300.00283 * 1 2 3
30 30 H 1.09001 * 109.47315 * 59.99895 * 1 2 3
31 31 H 1.08996 * 109.47352 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.46751 * 239.99961 * 2 1 3
33 33 H 1.09001 * 109.47315 * 120.00105 * 2 1 3
34 34 H 1.07996 * 119.46537 * 0.02562 * 4 3 2
35 35 H 1.07999 * 119.71318 * 180.27265 * 6 5 4
36 36 H 1.09003 * 109.58206 * 353.41741 * 11 10 8
37 37 H 1.08997 * 109.58626 * 113.83985 * 11 10 8
38 38 H 1.08999 * 109.56246 * 185.55223 * 12 11 10
39 39 H 1.08995 * 109.36264 * 65.49619 * 12 11 10
40 40 H 1.08996 * 109.46066 * 301.22239 * 13 12 11
41 41 H 0.96995 * 120.00321 * 180.02562 * 18 17 15
42 42 H 1.08998 * 109.47185 * 205.94906 * 23 14 13
43 43 H 1.09000 * 109.46721 * 325.94643 * 23 14 13
44 44 H 1.09005 * 109.46929 * 185.00623 * 24 23 14
45 45 H 1.08999 * 109.47125 * 305.00089 * 24 23 14
46 46 H 0.96704 * 114.00127 * 179.97438 * 25 24 23
47 47 H 1.09003 * 109.49398 * 178.68520 * 26 13 12
48 48 H 1.08996 * 109.49685 * 58.58178 * 26 13 12
49 49 H 1.09003 * 109.58655 * 246.15791 * 27 10 8
50 50 H 1.09000 * 109.58576 * 6.43615 * 27 10 8
51 51 H 1.08004 * 120.85406 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2649 2.0800 -1.1940
5 7 2.7041 3.3239 -1.2108
6 6 2.9355 3.9948 -0.1015
7 6 2.7312 3.3994 1.1436
8 6 2.9962 4.1510 2.3888
9 8 2.1985 4.1098 3.3051
10 7 4.1249 4.8775 2.5101
11 6 5.0664 4.9910 1.3879
12 6 6.4599 4.5853 1.8645
13 6 6.8398 5.4184 3.0908
14 7 8.1880 5.0517 3.5310
15 6 8.4577 3.7638 3.9104
16 1 7.6988 3.1767 4.4060
17 6 9.7067 3.2130 3.6579
18 7 10.4434 3.6773 2.6710
19 14 10.3417 1.8127 4.7188
20 1 9.4138 0.6575 4.6212
21 1 11.6895 1.4058 4.2464
22 1 10.4266 2.2616 6.1319
23 6 9.2478 6.0626 3.5655
24 6 9.1965 6.8098 4.8996
25 8 9.5014 5.9062 5.9638
26 6 5.8435 5.1493 4.2210
27 6 4.4402 5.5659 3.7692
28 6 2.2655 2.0799 1.1939
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.0831 1.5683 -2.1275
35 1 3.2906 5.0133 -0.1561
36 1 4.7520 4.3315 0.5790
37 1 5.0900 6.0216 1.0336
38 1 7.1832 4.7598 1.0679
39 1 6.4576 3.5281 2.1294
40 1 6.8178 6.4769 2.8317
41 1 11.3159 3.2922 2.4944
42 1 10.2174 5.5763 3.4583
43 1 9.1030 6.7686 2.7478
44 1 9.9258 7.6199 4.8906
45 1 8.1981 7.2215 5.0473
46 1 9.4877 6.3127 6.8411
47 1 6.1282 5.7251 5.1016
48 1 5.8470 4.0867 4.4636
49 1 4.4118 6.6443 3.6131
50 1 3.7113 5.2876 4.5304
51 1 2.0918 1.5895 2.1404
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098428586.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:32
Heat of formation + Delta-G solvation = -22.691594 kcal
Electronic energy + Delta-G solvation = -31633.192537 eV
Core-core repulsion = 27533.361776 eV
Total energy + Delta-G solvation = -4099.830761 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-40.96593 -39.41419 -37.57765 -36.18898 -35.08906 -34.59043 -32.74169 -31.85902
-30.82165 -30.36342 -29.72474 -27.73830 -25.51840 -24.63692 -24.32932 -23.18712
-22.60687 -22.00607 -20.67598 -19.98533 -18.99426 -17.50798 -17.16350 -16.69064
-16.58416 -16.25809 -15.73836 -14.99923 -14.89131 -14.72266 -14.41862 -14.10748
-14.00017 -13.85815 -13.76871 -13.34230 -13.27766 -13.20261 -12.97348 -12.88802
-12.49901 -12.40222 -12.13324 -11.85825 -11.79522 -11.53827 -11.32968 -11.17942
-10.95216 -10.77942 -10.63096 -10.52523 -10.22261 -10.07316 -9.93428 -9.87929
-9.87462 -9.50092 -9.46263 -9.10304 -9.02496 -8.46378 -8.34196 -6.56758
-5.72847 -3.20458 0.62468 1.02692 2.69158 3.06330 3.45255 3.50549
3.57958 3.60722 4.13727 4.38778 4.48415 4.57007 4.66889 4.72220
4.77142 5.04433 5.10123 5.14412 5.17173 5.24567 5.26724 5.38677
5.47730 5.49720 5.52218 5.58934 5.64566 5.68119 5.75807 5.85991
5.90210 5.94992 5.99376 6.02911 6.06932 6.09471 6.24394 6.37847
6.37955 6.43962 6.60894 6.65825 6.76648 6.80471 7.07192 7.15291
7.48489 7.65915 7.68993 7.90263 8.17242 8.45158 8.61982 9.24509
9.90743 10.43559 11.30301
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012617 B = 0.003030 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2218.731026 B = 9237.806386 C =10152.112862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.080 4.080
3 C -0.139 4.139
4 C 0.116 3.884
5 N -0.482 5.482
6 C 0.124 3.876
7 C -0.169 4.169
8 C 0.563 3.437
9 O -0.543 6.543
10 N -0.593 5.593
11 C 0.092 3.908
12 C -0.135 4.135
13 C 0.177 3.823
14 N -0.571 5.571
15 C -0.236 4.236
16 H 0.056 0.944
17 C 0.017 3.983
18 N -0.892 5.892
19 Si 0.893 3.107
20 H -0.287 1.287
21 H -0.294 1.294
22 H -0.282 1.282
23 C 0.142 3.858
24 C 0.060 3.940
25 O -0.543 6.543
26 C -0.139 4.139
27 C 0.115 3.885
28 C -0.024 4.024
29 H 0.057 0.943
30 H 0.056 0.944
31 H 0.060 0.940
32 H 0.078 0.922
33 H 0.077 0.923
34 H 0.158 0.842
35 H 0.164 0.836
36 H 0.084 0.916
37 H 0.069 0.931
38 H 0.074 0.926
39 H 0.071 0.929
40 H 0.047 0.953
41 H 0.252 0.748
42 H 0.104 0.896
43 H 0.036 0.964
44 H 0.019 0.981
45 H 0.022 0.978
46 H 0.349 0.651
47 H 0.068 0.932
48 H 0.068 0.932
49 H 0.064 0.936
50 H 0.085 0.915
51 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.860 0.995 -5.522 15.884
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.118 4.118
3 C -0.141 4.141
4 C -0.041 4.041
5 N -0.190 5.190
6 C -0.034 4.034
7 C -0.174 4.174
8 C 0.350 3.650
9 O -0.422 6.422
10 N -0.325 5.325
11 C -0.031 4.031
12 C -0.175 4.175
13 C 0.069 3.931
14 N -0.289 5.289
15 C -0.366 4.366
16 H 0.074 0.926
17 C -0.182 4.182
18 N -0.535 5.535
19 Si 0.723 3.277
20 H -0.213 1.213
21 H -0.220 1.220
22 H -0.208 1.208
23 C 0.016 3.984
24 C -0.021 4.021
25 O -0.344 6.344
26 C -0.179 4.179
27 C -0.008 4.008
28 C -0.050 4.050
29 H 0.076 0.924
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.097 0.903
33 H 0.095 0.905
34 H 0.175 0.825
35 H 0.181 0.819
36 H 0.102 0.898
37 H 0.087 0.913
38 H 0.093 0.907
39 H 0.090 0.910
40 H 0.066 0.934
41 H 0.062 0.938
42 H 0.121 0.879
43 H 0.054 0.946
44 H 0.037 0.963
45 H 0.040 0.960
46 H 0.192 0.808
47 H 0.087 0.913
48 H 0.087 0.913
49 H 0.082 0.918
50 H 0.104 0.896
51 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -14.876 0.921 -6.428 16.232
hybrid contribution 0.404 -0.615 1.863 2.003
sum -14.473 0.306 -4.565 15.179
Atomic orbital electron populations
1.21772 0.94416 1.02007 1.02364 1.20489 0.96310 0.91395 1.03625
1.20869 1.01318 0.98150 0.93747 1.22826 0.93358 0.90378 0.97560
1.67722 1.11954 1.08565 1.30747 1.23085 0.93676 1.00074 0.86563
1.20962 1.04658 0.96506 0.95249 1.18076 0.81591 0.78852 0.86490
1.90761 1.46451 1.64109 1.40852 1.48067 1.20319 1.49040 1.15073
1.22255 0.90780 1.01491 0.88527 1.22243 0.92750 1.02494 0.99967
1.20312 0.86597 0.95320 0.90841 1.43738 1.04065 1.06316 1.74828
1.18700 0.98300 0.89263 1.30298 0.92643 1.24888 0.99426 0.97667
0.96244 1.70012 1.12406 1.44129 1.26952 0.86539 0.77679 0.81905
0.81603 1.21306 1.22022 1.20798 1.21025 0.97523 0.90310 0.89571
1.23084 0.95756 0.91620 0.91609 1.86867 1.93387 1.38259 1.15902
1.22369 0.92727 1.02746 1.00076 1.21734 0.98214 0.95679 0.85147
1.21499 0.92215 0.92390 0.98884 0.92420 0.92477 0.92059 0.90349
0.90465 0.82491 0.81861 0.89813 0.91299 0.90709 0.91029 0.93450
0.93818 0.87889 0.94572 0.96324 0.96019 0.80822 0.91322 0.91311
0.91812 0.89618 0.84150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 9.89 37.16 0.37 -0.65 16
2 C -0.08 -0.61 6.08 -27.88 -0.17 -0.78 16
3 C -0.14 -1.43 5.15 -104.54 -0.54 -1.97 16
4 C 0.12 1.21 10.85 -17.47 -0.19 1.02 16
5 N -0.48 -5.99 10.35 -12.91 -0.13 -6.13 16
6 C 0.12 1.54 8.51 -17.14 -0.15 1.39 16
7 C -0.17 -2.31 5.20 -104.82 -0.54 -2.85 16
8 C 0.56 8.88 7.33 -12.33 -0.09 8.79 16
9 O -0.54 -10.07 16.42 5.32 0.09 -9.98 16
10 N -0.59 -8.88 2.98 -174.14 -0.52 -9.40 16
11 C 0.09 1.29 5.16 -3.93 -0.02 1.27 16
12 C -0.13 -2.42 5.29 -26.83 -0.14 -2.56 16
13 C 0.18 3.34 2.60 -67.89 -0.18 3.16 16
14 N -0.57 -13.13 2.35 -165.62 -0.39 -13.52 16
15 C -0.24 -6.21 7.96 -15.06 -0.12 -6.33 16
16 H 0.06 1.51 6.89 -52.49 -0.36 1.15 16
17 C 0.02 0.47 4.85 -17.43 -0.08 0.38 16
18 N -0.89 -25.20 11.51 55.49 0.64 -24.56 16
19 Si 0.89 22.23 29.62 -169.99 -5.04 17.20 16
20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
23 C 0.14 3.18 5.61 -4.04 -0.02 3.16 16
24 C 0.06 1.14 7.39 37.16 0.27 1.41 16
25 O -0.54 -11.25 13.33 -35.23 -0.47 -11.72 16
26 C -0.14 -2.44 5.30 -26.61 -0.14 -2.58 16
27 C 0.11 1.72 6.43 -3.71 -0.02 1.69 16
28 C -0.02 -0.29 9.52 -38.87 -0.37 -0.66 16
29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16
33 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16
34 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16
35 H 0.16 1.77 6.55 -52.49 -0.34 1.42 16
36 H 0.08 1.10 4.25 -51.93 -0.22 0.88 16
37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16
39 H 0.07 1.49 7.71 -51.93 -0.40 1.09 16
40 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16
41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
42 H 0.10 2.70 5.44 -51.93 -0.28 2.42 16
43 H 0.04 0.74 8.01 -51.93 -0.42 0.33 16
44 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16
45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
46 H 0.35 5.28 9.12 45.56 0.42 5.70 16
47 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
48 H 0.07 1.39 7.03 -51.93 -0.37 1.02 16
49 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
50 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16
51 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16
LS Contribution 404.74 15.07 6.10 6.10
Total: -1.00 -32.57 404.74 -9.23 -41.80
By element:
Atomic # 1 Polarization: 13.69 SS G_CDS: -7.37 Total: 6.32 kcal
Atomic # 6 Polarization: 6.04 SS G_CDS: -2.14 Total: 3.90 kcal
Atomic # 7 Polarization: -53.21 SS G_CDS: -0.40 Total: -53.61 kcal
Atomic # 8 Polarization: -21.32 SS G_CDS: -0.38 Total: -21.70 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.04 Total: 17.20 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -32.57 -9.23 -41.80 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098428586.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal
(2) G-P(sol) polarization free energy of solvation -32.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.462 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds